mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,966,598 | 0 | G | A | 45.5% | 13.4 / 65.3 | 55 | G61E (GGA→GAA) | rho | transcription termination factor Rho |
| * | NC_000913 | 1,297,893 | 0 | A | . | 32.4% | 83.6 / 42.2 | 37 | coding (229/2676 nt) | adhE | fused acetaldehyde‑CoA dehydrogenase and iron‑dependent alcohol dehydrogenasealdehyde/alcohol dehydrogenase AdhE |
| * | NC_000913 | 1,297,894 | 0 | G | . | 32.4% | 82.8 / 43.4 | 37 | coding (228/2676 nt) | adhE | fused acetaldehyde‑CoA dehydrogenase and iron‑dependent alcohol dehydrogenasealdehyde/alcohol dehydrogenase AdhE |
| * | NC_000913 | 1,915,060 | 0 | G | A | 31.2% | 36.9 / 20.0 | 32 | Q159* (CAA→TAA) | proQ | RNA chaperone ProQ |
| * | NC_000913 | 4,104,191 | 0 | G | T | 28.6% | 25.9 / 12.7 | 21 | A262E (GCG→GAG) | cpxA | sensor histidine kinase CpxA |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4355764 | 57 (1.440) | 3 (0.080) | 3/418 | 4.4 | 5.2% | coding (648/1458 nt) | dtpC | dipeptide/tripeptide:H(+) symporter DtpC |
| ? | NC_000913 | = 4355899 | 53 (1.350) | coding (513/1458 nt) | dtpC | dipeptide/tripeptide:H(+) symporter DtpC | |||||
| * | ? | NC_000913 | = 224346 | NA (NA) | 3 (0.080) | 3/420 | 4.4 | NA | noncoding (576/1542 nt) | rrsH | 16S ribosomal RNA |
| ? | NC_000913 | = 224426 | NA (NA) | noncoding (656/1542 nt) | rrsH | 16S ribosomal RNA | |||||