| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 9 (0.260) | 19 (0.610) | 17/382 | 0.9 | 61.0% | coding (290/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | 1209619 = | 16 (0.510) | intergenic (‑500/‑66) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
AGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTT > NC_000913/1209403‑1209861 | agCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATg > 1:268405/1‑285 (MQ=255)aatttgcaacaacggcaacacaggcattattaaacgcaaccgggaatacaactgtatttccatcccccccagaggcagatgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcatttagttttgccccttctcccaaaccaaCGTTTATGAAAACGAAGAAAAAAAAAAACAAAAGGCAAAAACCCCGCTTTTTCCATGGGGGTTttaaac > 2:8069‑M2/217‑283 (MQ=255) aaTCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATTGGTTAt < 1:495708/284‑1 (MQ=255) ccgcacgTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGACTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCGCCCAAACCAACGTTCATGAAACTGAAG‑AAATAAAAAGAAAATGGAATCATTCCTGCTTTTAACA‑GGGGGGATTAACATGGTTCTTTGGTAttttacg > 2:518981/1‑278 (MQ=255) tcccccccagaggcagatgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtggccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATTGGCTATGTACGCGTATAAACAAATGACCAGAACACAGATCTACAACGTAATGAGCt > 1:272273‑M2/155‑285 (MQ=255) cccccagagacagatgcttttgcggcattccacccccactgaatgattactgattgctcaataccaacaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGaa < 1:8069‑M2/134‑1 (MQ=255) gatgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCCTCATTCCTGCTTTTACCA‑GGGGGATTTAACa > 2:408459‑M2/140‑206 (MQ=255) gatgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACa < 1:408459‑M2/67‑1 (MQ=255) tGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCCTCATTCCTGCTTTTACCA‑gg > 2:440153/1‑184 (MQ=255) tGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑gg < 1:440153/184‑1 (MQ=255) tGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGAttt > 1:364255/1‑285 (MQ=255) acccccactaaatgattacttattagtcaataccaccaatcataaccggtatagctatgaaaccggggcggcctaatgtagccgttgcggcattgagttttgctccatcgcccaaaccaaCGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATGTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAaca < 2:364466‑M2/109‑1 (MQ=255) actgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATTGGCTATGTa > 2:446332‑M2/115‑198 (MQ=255) actgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATTGGCTATGTa < 1:446332‑M2/84‑1 (MQ=255) actgaatgattactgattgctcaataccaccaatcacaaccggtatagctatgaaaccggaccgtccttatgtagccgatgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAACTGAAG‑AAATAACAAGCAAATGGCATAATTCCTACTTCTACCA‑GGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATc > 1:364466‑M2/115‑229 (MQ=255) attactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGaa < 1:406745‑M2/162‑1 (MQ=255) gattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATTGGCTATGTACGCGTATc < 2:27126‑M2/92‑1 (MQ=255) gattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATTGGCTATGTACGCGTATc > 1:27126‑M2/101‑192 (MQ=255) gctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTa < 2:368544‑M2/124‑1 (MQ=255) gctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTa > 1:368544‑M2/97‑220 (MQ=255) ggCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAaca > 1:138808/1‑204 (MQ=255) ggCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAaca < 2:138808/204‑1 (MQ=255) ccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaacctaCGTTTATGAAAATGAAG‑AAATATCAAGCAAATGGCATCATTCCTGCTTTTAACA‑GGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCGGCTTGTTTAAGACAAGATAAGCGGCCCAAAGTCCGAAAGGCCGggaat > 1:401404‑M2/86‑283 (MQ=255) ccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACTTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACt > 1:144007‑M2/86‑285 (MQ=255) cataaccggaatagctatgaaaccggtgcgtcctaatgtagccgttgttgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTAACA‑GGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATgcgc > 1:568479‑M2/81‑210 (MQ=255) ccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTa < 1:211469/201‑1 (MQ=255) ccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTa > 2:211469/1‑201 (MQ=255) aaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATTCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGACATTATc > 1:357083‑M2/62‑285 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAG‑ACATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCGCAAAGTCCGAAAGGCAGGGACTGAAAAAACTGCTAAGGACATTATCGGCAGGTGCCAct > 1:304812/1‑285 (MQ=255) cGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGcc > 1:225908/1‑241 (MQ=255) aaCCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATTGGCTATGTACGCGTATTAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTgg < 1:518981/285‑1 (MQ=255) acagggACACCAACAGGTAATGCAGCGCCTTCTCCCAAACCAACGTTTATGAAAATGAAG‑AAATAACAAGCAACTGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACTCCGATCTACAACGTAATGCGCTGAACTGTGCATGATGCTAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGt < 1:180620/282‑1 (MQ=255) tagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACAGGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGtt < 1:377829‑M2/243‑1 (MQ=255) cGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGaa < 2:286857/148‑1 (MQ=255) cGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGaa > 1:286857/1‑148 (MQ=255) ccttctcccaaaccaaCGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGATCAGGACATTATCGGCAGGTGa > 1:277564‑M2/17‑249 (MQ=255) tctcccaaaccaaCGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc < 2:295623‑M2/102‑1 (MQ=255) tctcccaaaccaaCGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAc > 1:295623‑M2/14‑115 (MQ=255) | AGCGACCTGTATCAATCCCCCGCCCGTCATCCCAGCCACGAATAAACTCACCACGTAAATCAGGCAATTTATTTGTCGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAG‑AAATAACAAGCAAATGGCATCATTCCTGCTTTTACCA‑GGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTT > NC_000913/1209403‑1209861 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |