New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1547494 =	11 (0.430)	3 (0.120)	3/320	2.6	16.2%	coding (94/3048 nt)	fdnG	formate dehydrogenase N subunit alpha
	?	NC_000913	= 3828512	20 (0.780)					coding (154/1206 nt)	gltS	glutamate:sodium symporter
Rejected: Frequency below/above cutoff threshold.

GCATTTTTTTAACTGGCCTGTCAGGCAGTGGTGCGTTTTTCTACCGCTATTGAGGTAGGTCAATTTGCGAAGGCGGATTATTTTGTGGCAAACAGATGTTCTTTTTGATTTCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGAAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGAACAACAGTAGCGGCATTGGGCTTTGCCCCGAAGCAAGCACTGGCTCAGGCGCGAAACTACAAATTATTACGCGCTAAAGAGATCCGTAACACCTGCACATACTGTTCCGTAGGTTGCGGGCTATTGATGTATAGCCTGGGTGATGGCGCAAAAAACGCCAGAGAAGCGATTTATCACATTGAAGGTGACCCGGATCATCCGGTAAG  >  NC_000913/1547219‑1547660                                                                                                                                                                                                                                                                                    |                                                                                                                                                                       gcagcgcccgtaccgtgaccgccggaaagagtaatagaaccggccaacagccccatcagcggatcaagccctaacaagctagccataccactgccaatggcattttgcatcacccacagaccaacaaccacaatcaagaagatgccaaccacacgcccaccggcacgcaaactggcaatgttggcgttcaggccaatggtggcgaagaaagccagcatcaacggatcgcgcagggacatatcaaagttgacttcccagcccatgctttttttcagc                                                                                                                                                                        <  1:33936‑M1/1‑1 (MQ=255)                                                          ggtCAATTTGCGAAGGCGGATTATTTTGTGGCAAACAGATGTTCTTTTTGATTTCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGAAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGAACAACAGTAGCGGCATTGGGCTTTGCCCCGAAGCAAGCACTGGCCCAGGCGCGAAACTACAAATTATTACGCGCTAAAGAGATCCGTAACACCTGca                                                                                                               >  1:454509/1‑276 (MQ=255)                                                                     gAAGGCGGATTATTTTGTGGCAAACAGATGTTCTTTTTGATTTCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGAAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGTCGGTATGGCTGGAACAACAGTAGCGGCATTGGGCTTTGCCCCGAAGCAAGCACTGGCGCAGGCGCGAAACTACAAAATATTACGCGCTAAAGAGATCCGTAACACATGCACATACTGtt                                                                                                      >  1:453144/1‑274 (MQ=255)                                                                             ttttttttGGGACAAACATATTTTCTTTTTTATTTCGCGCAAAAAGATTAAGAATTTTACGTTTAGTTTCCTCGGGAAGTAATACCCCTGAAAAAAGAGGAAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAAGCTGCGCGGGCGGTATGGCTGGAACAACAGTAGCGGCATTGGGCTTTGCCCCGAAGCAAGCACTGGCTCAGGCGCGAAACTACAAATTATTACGCGCTAAAGAGATCCGTAACACCTGCACATACTGTTCCGTAGGTTg                                                                                            <  2:454505/272‑1 (MQ=255)                                                                                                                 gacccaaaaCATTACGAATTTTACGGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGGAGGCAATGGACGTCAGGCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGAACAACAGTAGCGGCATTGGGCTTTGCCCCGAAGCAAGCACTGGCTCAGGCTCGAAACTACAAATTATTACGCGCTAAAGAGATCCGTAACACCTGCTCATACTGTTCCGTAGGTTGCGGGCTATTGATGTATAGCCTGGGTGAt                                                                <  2:299310/263‑1 (MQ=255)                                                                                                                                                                    cTGAAAAAAGAGGAAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGAACAACAGTAGCGGCATTGGGCTTTGCCCCGAAGCAAGCACTGGCTCAGGCGCGAAACTACAAATTATTACGCGCTAAAGAGATCCGTAACACCTGCACATACTGTTCCGTAGGtt                                                                                             >  2:145892/1‑188 (MQ=255)                                                                                                                                                                       aaaaaaGAGGAAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGAACAACAGTAGCGGCATTGGGCTTTGCCCCGAAGCAAGCACTGGCTCAGGCGCGAAACTACAAATTATTACGCGCTAAAGAGATCCGTAACACCTGCACATACTGTTCCGTAGGTTGCg                                                                                          <  1:145892/188‑1 (MQ=255)                                                                                                                                                                          aaaGAGGAAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGAACAACAGTAGCGGCATTGGGCTTTGCCCCGAAGCAAGCACTGGCTCAGGCGCGAAACTACAAATTATTACGCGCTAAAGAGATCCGTAACACCTGCACATACTGTTCCGTAGGTTGCGGGCTATTGATGTATAGCCTGGGTGATGGCGCAAAAAACGCCAGAGAAGCGATTTATCACATTGAAGGTGACCCGGACCATCCGGTAAg  <  1:58108/273‑1 (MQ=255)                                                                                                                                                                                                                      tCTGCGCGGGCGGTATGGCTGGAACAACAGTAGCGGCATTGGGCTTTGACCCGAAGCAAGCACTGGCTCAGGCGCGAAACTACAAATTATTACGCGCTAAAGAGATCCGTAACACCTGCACATACTGTTCCGTAGGTTGCGGGCt                                                                                      >  2:349907/1‑145 (MQ=255)                                                                                                                                                                                                                         gcgcGGGCGGTATGGCTGGAACAACAGTAGCGGCATTGGGCTTTGCCCCGAAGCAAGCACTGGCTCAGGCGCGAAACTACAAATTATTACGCGCTAAAGAGATCCGTAACACCTGCACATACTGTTCCGTAGGTTGCGGGCTAtt                                                                                   <  1:349911/145‑1 (MQ=255)                                                                                                                                                                                                                                                 caGTCGCGGCATTGGGCTTTGCCCCGAAGCAAGCACTGGCTCAGGCGCGAAACTCCAAATTATTACGCGCTAAAGAGATGCGtca                                                                                                                       >  2:33580/1‑83 (MQ=255)                                                                                                                                                                                                                                                    tAGCGGCATTGGGCTTTGCCCCGAAGCAAGCACTGTCTCAGGCGCGAAACTACAAATTATTACGCGCTAAAGAGATCCGTAacac                                                                                                                    <  1:33580/85‑1 (MQ=255)                                                                                                                                                                                                                                                        tgacttcccagcccatgctttttttcagCTGGCTCAGGCGCGAAACTACAAattatt                                                                                                                                            <  2:427606‑M1/29‑1 (MQ=255)                                                                                                                                                                                                                                                           cttcccagcccatgctttttttcagCTGGCTCAGGCGCGAAACTACAAATTATTAcg                                                                                                                                         >  1:427610‑M1/26‑57 (MQ=255)                                                                                                                                                                                                                                                                                    |                                                                                                                                                                       GCATTTTTTTAACTGGCCTGTCAGGCAGTGGTGCGTTTTTCTACCGCTATTGAGGTAGGTCAATTTGCGAAGGCGGATTATTTTGTGGCAAACAGATGTTCTTTTTGATTTCGCGCAAAAAGATTCAGAATTTTACTGTTAGTTTCCTCGCGCAGTAATACCCCTGAAAAAAGAGGAAAGCAATGGACGTCAGTCGCAGACAATTTTTTAAAATCTGCGCGGGCGGTATGGCTGGAACAACAGTAGCGGCATTGGGCTTTGCCCCGAAGCAAGCACTGGCTCAGGCGCGAAACTACAAATTATTACGCGCTAAAGAGATCCGTAACACCTGCACATACTGTTCCGTAGGTTGCGGGCTATTGATGTATAGCCTGGGTGATGGCGCAAAAAACGCCAGAGAAGCGATTTATCACATTGAAGGTGACCCGGATCATCCGGTAAG  >  NC_000913/1547219‑1547660

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.