Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,649,291 +C coding (1017/4962 nt) b2520 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,649,2871.C81.1% 641.8 / 145.7 228coding (1021/4962 nt)b2520hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (22/21);  new base C (87/98);  total (109/119)
Fisher's exact test for biased strand distribution p-value = 7.35e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 252 total aligned reads displayed.

CAGCGCCGGAAGTTTTAAATCGAGTAGCGTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATG‑‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAAGAGACTTCAATTCCTTGCTGGGCCGCGCCGTTTTCCA  >  NC_000913/2649195‑2649379
                                                                                             |                                                                                             
  gcgcCGGAAGTTTTAAATCGAGTAGCGTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATG‑‑cc                                                                                            >  1:2551904/1‑93 (MQ=255)
     ccGGAAGTTTTAAATCGAGTAGCGTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATG‑‑ccccc                                                                                         >  2:1733429/1‑92 (MQ=255)
     ccGGAAGTTTTAAATCGAGTAGCGTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATG‑‑ccccc                                                                                         >  2:6595424/1‑92 (MQ=255)
     ccGGAAGTTTTAAATCGAGTAGCGTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATG‑‑ccccc                                                                                         <  1:7126084/93‑2 (MQ=255)
      cGGAAGTTTTAAATCGAGTAGCGTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATG‑‑ccccct                                                                                        >  1:6095132/1‑91 (MQ=255)
      cGGAAGTTTTAAATCGAGTAGCGTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATG‑‑CCCCTg                                                                                        <  2:2773371/93‑1 (MQ=255)
       ggAAGTTTTAAATCGAGTAGCGTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATG‑‑CCCCTGa                                                                                       >  1:7288156/1‑93 (MQ=255)
        gAAGTTTTAAATCGAGTAGCGTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATG‑‑ccccctga                                                                                      <  2:5230819/93‑5 (MQ=255)
        gAAGTTTTAAATCGAGTAGCGTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATG‑‑ccccctga                                                                                      >  1:546708/1‑89 (MQ=255)
          aGTTTTAAATCGAGTAGCGTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGc                                                                                     >  2:164869/1‑93 (MQ=255)
           gTTTTAAATCGAGTAGCGTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCg                                                                                    >  1:1556586/1‑93 (MQ=255)
            ttttAAATCGAGTAGCGTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGt                                                                                   >  2:6726095/1‑93 (MQ=255)
              ttAAATCGAGTAGCGTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCa                                                                                 <  1:2110784/93‑1 (MQ=255)
               tAAATCGAGTAGCGTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCAc                                                                                >  2:4482446/1‑93 (MQ=255)
               tAAATCGAGTAGCGTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATG‑‑CCCCTGAGCGTCACt                                                                               <  2:2385019/93‑1 (MQ=255)
                aaaTCGAGTAGCGTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACt                                                                               <  1:7025448/93‑1 (MQ=255)
                aaaTCGAGTAGCGTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACt                                                                               <  2:349974/93‑1 (MQ=255)
                 aaTCGAGTAGCGTTGTCTGACTGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTg                                                                              >  1:4730566/1‑93 (MQ=255)
                  aTCGAGTAGCGTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTgg                                                                             >  2:3281384/1‑93 (MQ=255)
                   tggAGTAGCGTTTCCGGCCCGTTTTTCCGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGt                                                                            <  1:2381266/91‑1 (MQ=255)
                      aGTAGCGTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGc                                                                         >  2:633318/1‑93 (MQ=255)
                       gTAGCGTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGcc                                                                        >  2:5408322/1‑93 (MQ=255)
                       gTAGCGTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGcc                                                                        >  2:224730/1‑93 (MQ=255)
                       gTAGCGTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATG‑‑CCCCTGAGCGTCACTGGTTGCCt                                                                       <  1:370489/93‑1 (MQ=255)
                       gTAGCGTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATG‑‑CCCCTGAGCGTCACTGGTTGCCt                                                                       >  1:46838/1‑93 (MQ=255)
                        tAGCGTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCt                                                                       <  1:4748901/93‑1 (MQ=255)
                          gCGTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGa                                                                     <  1:1241413/93‑1 (MQ=255)
                           cGTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAg                                                                    <  1:4496873/93‑1 (MQ=255)
                           cGTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAg                                                                    <  1:6000780/93‑1 (MQ=255)
                            gTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGt                                                                   >  2:5059525/1‑93 (MQ=255)
                            gTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGt                                                                   >  2:7156507/1‑93 (MQ=255)
                            gTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGt                                                                   >  1:2460621/1‑93 (MQ=255)
                             ttGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCAGTGGTTGCCTGAGTc                                                                  <  2:5193861/93‑1 (MQ=255)
                               gTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCag                                                                <  1:6796804/93‑1 (MQ=255)
                               gTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCag                                                                <  1:4816978/93‑1 (MQ=255)
                               gTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATG‑‑CCCCTGAGCGTCACTGGTTGCCTGAGTCaga                                                               >  1:4024463/1‑93 (MQ=255)
                                 cTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCagag                                                              <  1:1932319/93‑1 (MQ=255)
                                   gACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTc                                                            <  1:5380098/93‑1 (MQ=255)
                                   gACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTc                                                            >  2:6269617/1‑93 (MQ=255)
                                    aCCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCt                                                           >  1:1790484/1‑93 (MQ=255)
                                    aCCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATG‑‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTg                                                          >  2:1819632/1‑93 (MQ=255)
                                      cGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGc                                                         <  2:709540/93‑1 (MQ=255)
                                      cGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGc                                                         <  2:1697191/93‑1 (MQ=255)
                                      cGTCTTTACACGCCAACAGTAATTCCGCGTTATTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGc                                                         <  1:1030714/93‑1 (MQ=255)
                                       gTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATG‑‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGccc                                                       <  2:4804322/93‑1 (MQ=255)
                                        tCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGccc                                                       <  1:7262810/93‑1 (MQ=255)
                                        tCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGccc                                                       >  2:1643526/1‑93 (MQ=255)
                                         cTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATG‑‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCtt                                                     <  2:600134/93‑1 (MQ=255)
                                         cTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATG‑‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCtt                                                     <  2:1508617/93‑1 (MQ=255)
                                          tttACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGCCCCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCt                                                      <  2:5980081/93‑1 (MQ=255)
                                          tttACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGCCCCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCt                                                      <  1:5815757/93‑1 (MQ=255)
                                            tACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTtc                                                   <  1:408801/93‑1 (MQ=255)
                                            tACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTtc                                                   <  1:5954602/93‑1 (MQ=255)
                                              cgcgCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTtctc                                                 <  2:4133554/93‑1 (MQ=255)
                                               gcgcCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCa                                                <  1:1656228/93‑1 (MQ=255)
                                                cgcCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCAt                                               <  1:6343883/93‑1 (MQ=255)
                                                cgcCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCAt                                               >  1:3530335/1‑93 (MQ=255)
                                                 gcCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCAtt                                              <  2:10914/93‑1 (MQ=255)
                                                 gcCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATG‑‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCAttt                                             <  1:1642912/93‑1 (MQ=255)
                                                    aaCAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTtaa                                           >  2:2624272/1‑93 (MQ=255)
                                                     aCAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTtaat                                          >  1:453984/1‑93 (MQ=255)
                                                      cAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTtaata                                         <  2:3063217/93‑1 (MQ=255)
                                                      cAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTtaata                                         >  2:4791054/1‑93 (MQ=255)
                                                      cAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTtaata                                         <  2:2166122/93‑1 (MQ=255)
                                                        gTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATaaa                                       >  2:5634318/1‑93 (MQ=255)
                                                        gTAATGCCGCGTTTTTATCATTTTCCAGCTGAACATGC‑CCCCTGACCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATaaa                                       >  1:2501528/1‑93 (MQ=255)
                                                         tAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAag                                      <  1:2836426/93‑1 (MQ=255)
                                                         tAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAag                                      >  2:5536155/1‑93 (MQ=255)
                                                         tAATGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAag                                      >  1:5102079/1‑93 (MQ=255)
                                                          aaTGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAaga                                     >  2:3966195/1‑93 (MQ=255)
                                                           aTGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAagag                                    <  2:2861383/93‑1 (MQ=255)
                                                            tGCCGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAAgaga                                   >  2:6549426/1‑93 (MQ=255)
                                                              ccGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAAGAGACt                                 <  2:6981471/93‑1 (MQ=255)
                                                              ccGCGTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAAGAGACt                                 >  2:1429134/1‑93 (MQ=255)
                                                               cgcgTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAAGAGACtt                                >  1:3105773/1‑93 (MQ=255)
                                                               cgcgTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAAGAGACtt                                >  2:7031421/1‑93 (MQ=255)
                                                                 cgTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAAGAGACTTCa                              <  1:2255645/93‑1 (MQ=255)
                                                                  gTTTTTATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAAGAGACTTCaa                             <  1:2066025/93‑1 (MQ=255)
                                                                    ttttATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAAGAGACTTCAAtt                           >  1:3477202/1‑93 (MQ=255)
                                                                    ttttATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAAGAGACTTCAAtt                           <  1:2877154/93‑1 (MQ=255)
                                                                     tttATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAAGAGACTTCAATTc                          >  2:5659461/1‑93 (MQ=255)
                                                                      ttATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAAGAGACTTCAATTcc                         >  1:7244408/1‑93 (MQ=255)
                                                                      ttATCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAAGAGACTTCAATTcc                         <  2:7483469/93‑1 (MQ=255)
                                                                        aTCATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAAGAGACTTCAATTCCtt                       <  2:5026439/93‑1 (MQ=255)
                                                                         tCATTTTCAAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGGCCTTTCTCATTTAATAGAGGGACTTCAATTCCTTg                      >  1:5917366/1‑93 (MQ=255)
                                                                          cATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAAGAGACTTCAATTCCTTGc                     <  2:4283269/93‑1 (MQ=255)
                                                                          cATTTTCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAAGAGACTTCAATTCCTTGc                     >  2:85269/1‑93 (MQ=255)
                                                                            ttttCCAGCTGCACATG‑‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAAGAGACTTCAATTCCTTGCTgg                  >  1:4977128/1‑93 (MQ=255)
                                                                            ttttCCAGCTGCACATG‑‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAAGAGACTTCAATTCCTTGCTgg                  >  1:4136311/1‑93 (MQ=255)
                                                                              ttCCAGCTGCACATGCCCCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAAGAGACTTCAATTCCTTGCTgg                  <  1:6467829/93‑1 (MQ=255)
                                                                              ttCCAGCTGCACATG‑‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAAGAGACTTCAATTCCTTGCTGGGc                <  2:1242913/93‑1 (MQ=255)
                                                                               tCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAAGAGACTTCAATTCCTTGCTGGGc                <  1:4324256/93‑1 (MQ=255)
                                                                               tCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAAGAGACTTCAATTCCTTGCTGGGc                <  2:689229/93‑1 (MQ=255)
                                                                               tCCAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAAGAGACTTCAATTCCTTGCTGGGc                <  1:5866621/93‑1 (MQ=255)
                                                                               tCCAGCTGCACATG‑‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAAGAGACTTCAATTCCTTGCTGGGcc               <  2:2811666/93‑1 (MQ=255)
                                                                                 cAGCTGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAAGAGACTTCAATTCCTTGCTGGGCcg              >  2:1944739/1‑93 (MQ=255)
                                                                                  aGCTGCACATG‑‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAAGAGACTTCAATTCCTTGCTGGGCcgcg            >  2:3749304/1‑93 (MQ=255)
                                                                                   gCTGCACATG‑‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAAGAGACTTCAATTCCTTGCTGGGCCgcgc           >  1:3209336/1‑93 (MQ=255)
                                                                                     tGCACATGC‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAAGAGACTTCAATTCCTTGCTGGGCCGCGcc          >  2:792255/1‑93 (MQ=255)
                                                                                       cacaTG‑‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAAGAGACTTCAATTCCTTGCTGGGCCGCGCCGtt       >  1:7480374/1‑93 (MQ=255)
                                                                                             |                                                                                             
CAGCGCCGGAAGTTTTAAATCGAGTAGCGTTGTCTGACCGTCTTTACGCGCCAACAGTAATGCCGCGTTTTTATCATTTTCCAGCTGCACATG‑‑CCCCTGAGCGTCACTGGTTGCCTGAGTCAGAGTCTGCCCTTTCTCATTTAATAAAGAGACTTCAATTCCTTGCTGGGCCGCGCCGTTTTCCA  >  NC_000913/2649195‑2649379

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑