Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 729,698 A→G H298R (CAC→CGC)  rhsC → RhsC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913729,6980AG81.4% 134.0 / 32.8 87H298R (CAC→CGC) rhsCRhsC
Reads supporting (aligned to +/- strand):  ref base A (11/5);  new base G (47/23);  total (59/28)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCA  >  NC_000913/729667‑729790
                               |                                                                                              
ggCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGccc                                 <  2:4551582/93‑1 (MQ=14)
ggCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGccc                                 >  1:4469139/1‑93 (MQ=14)
ggCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATCCCCGGAGAATTTCCCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGccc                                 <  1:3672486/93‑1 (MQ=9)
ggCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGccc                                 >  1:3981917/1‑93 (MQ=31)
 gCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGcccc                                >  2:5360331/1‑93 (MQ=17)
 gCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGcccc                                >  1:1571689/1‑93 (MQ=17)
 gCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGcccc                                >  2:2716599/1‑93 (MQ=17)
 gCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGcccc                                >  2:3614839/1‑93 (MQ=17)
 gCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGcccc                                >  1:808518/1‑93 (MQ=17)
 gCATCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGcccc                                >  1:3007912/1‑93 (MQ=17)
 gCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGcccc                                >  1:4695230/1‑93 (MQ=32)
   aTCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCcgc                              <  2:5992577/93‑1 (MQ=18)
   aTCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCCGGGGCGCTATGGCTGGGCGcccccc                              >  1:2456143/1‑91 (MQ=11)
   aTCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCCGGAAGcccccc                              >  1:2206399/1‑91 (MQ=255)
    tCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGGCGCCCcgcg                             >  1:219535/1‑93 (MQ=16)
    tCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCcgcg                             >  2:5149078/1‑93 (MQ=18)
    tCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCcgcg                             >  2:7242930/1‑93 (MQ=18)
    tCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCcgcg                             >  1:5455245/1‑93 (MQ=18)
    tCCGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCcgcg                             >  2:150426/1‑93 (MQ=18)
     ccGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCgcgg                            <  1:3219617/93‑1 (MQ=21)
      cGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCgcggc                           <  1:1971139/93‑1 (MQ=21)
      cGTCTGTCTGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCCCCGGGGCGCTATGGCTGGGCGCCCCccggg                           >  1:2642441/1‑92 (MQ=11)
      cGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCgcggc                           >  1:2273194/1‑93 (MQ=33)
       gtctgtctGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCgcggcg                          >  2:7420087/1‑93 (MQ=18)
       gtctgtctGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCgcggcg                          >  2:7420086/1‑93 (MQ=18)
       gtctgtctGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCgcggcg                          >  1:4378215/1‑93 (MQ=18)
       gtctgtctGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCgcggcg                          >  1:4378214/1‑93 (MQ=18)
       gtctgtctGCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCgcggcg                          >  1:1093102/1‑93 (MQ=18)
       gtctgtctGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCgccgcg                          >  1:32886/1‑93 (MQ=18)
        tctgtctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGa                         >  2:6126950/1‑93 (MQ=18)
        tctgtctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGa                         >  1:5904819/1‑93 (MQ=18)
        tctgtctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGa                         >  2:5324772/1‑93 (MQ=18)
        tctgtctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGa                         >  1:3311229/1‑93 (MQ=18)
        tctgtctgCCGTGTGGCTGACGCCCGACCCGGAATTACCGGGGGATTTTACCGCCGCGGCGCTGGGGGCCTATGGGTGGGTCGCCCCgcgggt                          >  1:7466007/1‑91 (MQ=2)
        tctgtctgCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGa                         >  1:3375822/1‑93 (MQ=33)
         ctgtctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGaa                        <  2:1374427/93‑1 (MQ=21)
         ctgtctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGaa                        <  2:4144092/93‑1 (MQ=21)
          tgtctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGANc                       >  2:4399089/1‑93 (MQ=16)
          tgtctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAAc                       <  1:6934741/93‑1 (MQ=21)
          tgtctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAAc                       <  1:4374594/93‑1 (MQ=21)
          tgtctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAAc                       <  1:1481691/93‑1 (MQ=21)
          tgtctgCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAAc                       <  2:6488614/93‑1 (MQ=34)
           gtctgCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGGCGCCCCGCGGCGAACt                      >  1:5565321/1‑93 (MQ=18)
           gtctgCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGGCGCCCCCCGGCGAACt                      >  1:2745341/1‑93 (MQ=16)
            tctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTg                     >  2:6761121/1‑93 (MQ=18)
            tctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTg                     >  2:774468/1‑93 (MQ=18)
             ctgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTgg                    <  1:7046335/93‑1 (MQ=21)
             ctgCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTgg                    <  2:6200991/93‑1 (MQ=33)
              tgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGGACTggc                   >  1:1487551/1‑93 (MQ=255)
              tgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTggc                   >  2:4561335/1‑93 (MQ=18)
              tgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTggc                   <  2:3515364/93‑1 (MQ=21)
              tgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTggc                   >  2:3516499/1‑93 (MQ=18)
              tgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTggc                   >  1:5610118/1‑93 (MQ=18)
              tgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTggc                   <  1:5594566/93‑1 (MQ=21)
              tgCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTAAATGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTggc                   <  2:1374356/93‑1 (MQ=255)
               gCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGGCGCCCCGCGGCGAACTcgcg                  >  1:3319649/1‑93 (MQ=255)
               gCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTggcg                  >  2:2456855/1‑93 (MQ=18)
               gCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTggcg                  >  2:5316230/1‑93 (MQ=18)
               gCCGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTggcg                  >  2:3844108/1‑93 (MQ=18)
                ccGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTggcgg                 >  2:2986488/1‑93 (MQ=18)
                 cGTGTGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTggcggc                <  1:2398729/93‑1 (MQ=25)
                  gtgtGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGgcggcg               <  1:1427115/93‑1 (MQ=25)
                  gtgtGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGgcggcg               >  1:1681891/1‑93 (MQ=25)
                  gtgtGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGgcggcg               >  1:3630672/1‑93 (MQ=25)
                  gtgtGGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCCGACTGgcggcg               >  1:1676618/1‑93 (MQ=255)
                  gtgtGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGgcggcg               >  2:338197/1‑93 (MQ=35)
                   tgtgGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGcggcgg              >  2:169721/1‑93 (MQ=255)
                     tgGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGgtg            >  2:4729658/1‑93 (MQ=255)
                     tgGCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGgtg            <  2:1823797/93‑1 (MQ=37)
                      ggCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGgtgt           >  2:949975/1‑93 (MQ=255)
                      ggCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGgtgt           <  2:3612296/93‑1 (MQ=255)
                      ggCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGGGCGCTATGGCTGGGCGCCCCCCGGCGAACAGGcgggggggg           >  1:88942/1‑90 (MQ=11)
                      ggCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGcggcggggg           >  1:6825970/1‑90 (MQ=37)
                       gCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTa          >  2:4766715/1‑93 (MQ=255)
                       gCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTa          <  2:1072675/93‑1 (MQ=255)
                       gCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTa          <  2:1556249/93‑1 (MQ=37)
                       gCTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTa          >  2:2295735/1‑93 (MQ=255)
                        cTGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTAt         >  2:2099308/1‑93 (MQ=255)
                         tGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATg        <  2:1605810/93‑1 (MQ=255)
                         tGACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATg        <  1:4217344/93‑1 (MQ=255)
                         tGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATg        <  1:2933638/93‑1 (MQ=38)
                          gACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGa       <  2:6355697/93‑1 (MQ=37)
                          gACGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGa       >  1:5952509/1‑93 (MQ=255)
                           acacACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGAc      <  1:5852217/90‑1 (MQ=37)
                           aCGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGAc      <  2:3125922/93‑1 (MQ=255)
                           aCGCGCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGAc      >  1:2400404/1‑93 (MQ=37)
                            cGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGAcc     >  2:285684/1‑93 (MQ=37)
                               aCGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCgca  >  2:5889345/1‑93 (MQ=39)
                               |                                                                                              
GGCATCCGTCTGTCTGCCGTGTGGCTGACGCACGACCCGGAATACCCGGAGAATTTACCTGCCGCGCCGCTGGTGCGCTATGGCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCA  >  NC_000913/729667‑729790

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: