Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,332,547 G→A T223T (ACG→ACA cysB → positive transcriptional regulator for cysteine regulon

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,332,5470GA84.7% 750.8 / 89.1 274T223T (ACG→ACAcysBpositive transcriptional regulator for cysteine regulon
Reads supporting (aligned to +/- strand):  ref base G (18/24);  new base A (134/98);  total (152/122)
Fisher's exact test for biased strand distribution p-value = 9.14e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.61e-01

Only 100 of 280 total aligned reads displayed.

CCGTTGGTGACATATACCTTCGGCTTTACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACGGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCATGGCGGTGGATCCGGTCGCCGATC  >  NC_000913/1332455‑1332638
                                                                                            |                                                                                           
ccGTTGGTGACATATACCTTCGGCTTTACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACg                                                                                             >  1:4245114/1‑93 (MQ=255)
  gTTGGTGACATATACCTTCGGCTTTACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGc                                                                                           <  1:1856340/93‑1 (MQ=255)
    tGGTGACATATCCCTTCGGCTTTACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCaa                                                                                         <  1:4596782/93‑1 (MQ=255)
    tGGTGACATATACCTTCGGCTTTACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCaa                                                                                         <  2:7308305/93‑1 (MQ=255)
    tGGTGACATATACCTTCGGCTTTACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCaa                                                                                         >  1:7254393/1‑93 (MQ=255)
      gTGACATATACCTTCGGCTTTACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACg                                                                                       <  1:4373497/93‑1 (MQ=255)
      gTGACATATACCTTCGGCTTTACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACg                                                                                       <  1:7187551/93‑1 (MQ=255)
       tGACATATACCTTCGGCTTTACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACGGCAACgg                                                                                      >  1:6842972/1‑93 (MQ=255)
        gACATATACCTTCGGCTTTACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACGGCAACGGa                                                                                     <  2:5823573/93‑1 (MQ=255)
        gACATATACCTTCGGCTTTACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGa                                                                                     >  2:5892549/1‑93 (MQ=255)
        gACATATACCTTCGGCTTTACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGa                                                                                     <  2:1934035/93‑1 (MQ=255)
          cATATACCTTCGGCTTTACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATg                                                                                   >  1:3355928/1‑93 (MQ=255)
           atatACCTTCGGCTTTACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGc                                                                                  >  2:5639425/1‑93 (MQ=255)
            tataCCTTTGGCTTTACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCt                                                                                 >  1:3977851/1‑93 (MQ=255)
            tataCCTTCGGCTTTACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCt                                                                                 >  1:7020044/1‑93 (MQ=255)
            tataCCTTCGGCTTTACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCt                                                                                 <  2:1875437/93‑1 (MQ=255)
            aataCCTTCGGCTTTACCGAACGTTAAGACCTGGATACTGCCTTTAATCGCGCAGGGTTAGCGCCGCGTATCGTTTTCACAGCAACGGATGCt                                                                                 <  1:7462201/92‑1 (MQ=255)
             ataCCTTCGGCTTTACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACGGCAACGGATGCTg                                                                                >  1:3694929/1‑93 (MQ=255)
              taCCTTCGGCTTTACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGa                                                                               <  2:6960804/93‑1 (MQ=255)
                ccTTTGGCTTTACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACg                                                                             <  2:640964/93‑1 (MQ=255)
                  ttCGGCTTTACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTc                                                                           >  1:5302499/1‑93 (MQ=255)
                     ggCTTTACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCAtt                                                                        <  2:430503/93‑1 (MQ=255)
                      gCTTTACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTa                                                                       >  2:732023/1‑93 (MQ=255)
                      gCTTTACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTa                                                                       >  1:6034973/1‑93 (MQ=255)
                      gCTTTACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTa                                                                       >  2:4927566/1‑93 (MQ=255)
                      gCTTTACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTa                                                                       >  2:5779282/1‑93 (MQ=255)
                       cTTTACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTaa                                                                      >  1:6125644/1‑93 (MQ=255)
                        tttACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTaaa                                                                     >  2:4414915/1‑93 (MQ=255)
                         ttACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTaaaa                                                                    >  2:6268602/1‑93 (MQ=255)
                          tACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAAc                                                                   <  2:376172/93‑1 (MQ=255)
                          tACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAAc                                                                   >  2:1363640/1‑93 (MQ=255)
                          tACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAAc                                                                   >  2:541664/1‑93 (MQ=255)
                              ggACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTAc                                                               <  2:5124533/93‑1 (MQ=255)
                              ggACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTAc                                                               <  1:5556246/93‑1 (MQ=255)
                               gACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACg                                                              <  2:4784933/93‑1 (MQ=255)
                                aCGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGt                                                             <  1:6642898/93‑1 (MQ=255)
                                   ttCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCg                                                          >  2:5081899/1‑93 (MQ=255)
                                   ttCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCg                                                          >  2:84159/1‑93 (MQ=255)
                                   ttCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCg                                                          >  1:2156815/1‑93 (MQ=255)
                                    tCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACGGCAACGGATGCTGACGTCATTAAAACTTACGTCCgg                                                         <  1:1502832/93‑1 (MQ=255)
                                    tCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCgg                                                         >  1:6562162/1‑93 (MQ=255)
                                     cAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGt                                                        >  2:2651537/1‑93 (MQ=255)
                                       gAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTa                                                      >  2:6645188/1‑93 (MQ=255)
                                       gAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTa                                                      <  2:4761127/93‑1 (MQ=255)
                                       gAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTa                                                      <  1:3281186/93‑1 (MQ=255)
                                        aaCTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAg                                                     <  1:1440095/93‑1 (MQ=255)
                                         aCTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAgg                                                    <  1:2608643/93‑1 (MQ=255)
                                          cTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAggg                                                   <  1:3101751/93‑1 (MQ=255)
                                           tGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGc                                                  <  1:4709756/93‑1 (MQ=255)
                                            ggATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCt                                                 >  2:2827182/1‑93 (MQ=255)
                                             gATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTg                                                >  1:3814564/1‑93 (MQ=255)
                                              aTACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACGGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTgg                                               <  2:2412672/93‑1 (MQ=255)
                                               tACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACGGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTggg                                              <  2:249254/93‑1 (MQ=255)
                                               tACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTggg                                              >  1:2794054/1‑93 (MQ=255)
                                               tACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTggg                                              <  1:5788558/93‑1 (MQ=255)
                                                aCTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTgggg                                             <  2:5188746/93‑1 (MQ=255)
                                                 cTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTggggg                                            <  2:4639925/93‑1 (MQ=255)
                                                 cTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTggggg                                            >  2:3859972/1‑93 (MQ=255)
                                                   gCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTa                                          <  2:3587078/93‑1 (MQ=255)
                                                   gCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTa                                          >  1:4494600/1‑93 (MQ=255)
                                                    ccTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACGGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAg                                         >  2:220904/1‑93 (MQ=255)
                                                     cTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAgg                                        >  1:6233982/1‑93 (MQ=255)
                                                      tttAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACGGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAggg                                       >  2:4875273/1‑93 (MQ=255)
                                                      tttAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAggg                                       >  2:7475800/1‑93 (MQ=255)
                                                       ttAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAgggg                                      >  2:4070121/1‑93 (MQ=255)
                                                        tAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGt                                     >  2:3058900/1‑93 (MQ=255)
                                                         aaTCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTc                                    >  1:2044562/1‑93 (MQ=255)
                                                          aTCGCGCAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCa                                   >  2:1637312/1‑93 (MQ=255)
                                                             gcgcAGGGTTAACGCCGCGTATCGTTTTCACGGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTg                                >  1:5702391/1‑93 (MQ=255)
                                                             gcgcAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTg                                >  2:631713/1‑93 (MQ=255)
                                                               gcAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGAGGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGcc                              >  1:5185469/1‑93 (MQ=255)
                                                                cAGGGTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCa                             <  2:6851072/93‑1 (MQ=255)
                                                                  gggTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGc                           >  1:3832367/1‑93 (MQ=255)
                                                                  gggTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGc                           >  2:417562/1‑93 (MQ=255)
                                                                   ggTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCa                          >  1:2901853/1‑93 (MQ=255)
                                                                   ggTTAACGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCa                          >  2:6610311/1‑93 (MQ=255)
                                                                       aaCGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCATGGc                      <  2:3284186/93‑1 (MQ=255)
                                                                       aaCGCCGCGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCATGGc                      <  2:4988765/93‑1 (MQ=255)
                                                                          gccgcGTATCGTTTTCACGGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCATGGCGGt                   <  2:6885622/93‑1 (MQ=255)
                                                                           ccgcGTATCGTTTTCACGGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCATGGCGGTg                  <  1:241972/93‑1 (MQ=255)
                                                                           ccgcGTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCATGGCGGTg                  >  2:78427/1‑93 (MQ=255)
                                                                              cgTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCATGGCGGTGGAt               <  2:6041720/93‑1 (MQ=255)
                                                                              cgTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCATGGCGGTGGAt               <  2:2615376/93‑1 (MQ=255)
                                                                               gTATCGTTTTCACGGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCATGGCGGTGGATc              <  2:3409898/93‑1 (MQ=255)
                                                                               gTATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCATGGCGGTGGATc              >  2:7062079/1‑93 (MQ=255)
                                                                                tATCGTTTTCACGGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCATGGCGGTGGATcc             >  1:1257489/1‑93 (MQ=255)
                                                                                tATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCATGGCGGTGGATcc             >  1:6656295/1‑93 (MQ=255)
                                                                                tATCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCATGGCGGTGGATcc             <  1:5888954/93‑1 (MQ=255)
                                                                                 aTCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCATGGCGGTGGATCCg            >  1:25139/1‑93 (MQ=255)
                                                                                 aTCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCATGGCGGTGGATCCg            <  1:754998/93‑1 (MQ=255)
                                                                                  tCGTTTTCACGGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCATGGCGGTGGATCCgg           <  1:4860828/93‑1 (MQ=255)
                                                                                  tCGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCATGGCGGTGGATCCgg           >  2:7184785/1‑93 (MQ=255)
                                                                                   cGTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCATGGCGGTGGATCCGGt          <  1:3072509/93‑1 (MQ=255)
                                                                                    gTTTTCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCATGGCGGTGGATCCGGTc         >  1:6450751/1‑93 (MQ=255)
                                                                                      tttCACGGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCATGGCGGTGGATCCGGTCGc       <  1:355017/93‑1 (MQ=255)
                                                                                       ttCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCATGGCGGTGGATCCGGTCGcc      >  1:377334/1‑93 (MQ=255)
                                                                                       ttCACAGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCATGGCGGTGGATCCGGTCGcc      <  1:1138109/93‑1 (MQ=255)
                                                                                         cacaGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCATGGCGGTGGATCCGGTCGCCGa    <  2:4487710/93‑1 (MQ=255)
                                                                                         cacaGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCATGGCGGTGGATCCGGTCGCCGa    >  2:6162486/1‑93 (MQ=255)
                                                                                         cacaGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCATGGCGGTGGATCCGGTCGCCGa    <  1:2260142/93‑1 (MQ=255)
                                                                                            |                                                                                           
CCGTTGGTGACATATACCTTCGGCTTTACCGGACGTTCAGAACTGGATACTGCCTTTAATCGCGCAGGGTTAACGCCGCGTATCGTTTTCACGGCAACGGATGCTGACGTCATTAAAACTTACGTCCGGTTAGGGCTGGGGGTAGGGGTCATTGCCAGCATGGCGGTGGATCCGGTCGCCGATC  >  NC_000913/1332455‑1332638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: