Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,342,077 A→G N98N (AAT→AAC)  b1284 ← putative DEOR‑type transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,342,0770AG79.1% 532.0 / 161.7 284N98N (AAT→AAC) b1284putative DEOR‑type transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base A (34/25);  new base G (106/118);  total (140/144)
Fisher's exact test for biased strand distribution p-value = 1.88e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.54e-01

Only 100 of 285 total aligned reads displayed.

GGCGCGTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCACGCTTCAGCGTATAGTT  >  NC_000913/1341985‑1342166
                                                                                            |                                                                                         
ggCGCGTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCa                                                                                           >  2:614141/1‑93 (MQ=255)
  cgcgTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGtt                                                                                         <  1:4865438/93‑1 (MQ=255)
   gcgTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTtg                                                                                        >  1:7024341/1‑93 (MQ=255)
    cgTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTtgc                                                                                       <  1:3624479/93‑1 (MQ=255)
       cTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTtgctgc                                                                                    <  2:109910/93‑1 (MQ=255)
         ttCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTtgctgctg                                                                                  <  2:5767132/93‑1 (MQ=255)
         ttCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATtgctgctg                                                                                  >  1:717267/1‑93 (MQ=255)
           cAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGcc                                                                                <  2:7323961/93‑1 (MQ=255)
             gCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCAt                                                                              >  2:3658111/1‑93 (MQ=255)
                aaTGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCAtttt                                                                           >  1:2396910/1‑93 (MQ=255)
                aaTGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCAtttt                                                                           >  2:2897854/1‑93 (MQ=255)
                aaTGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCAtttt                                                                           >  2:4736843/1‑93 (MQ=255)
                aaTGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCAGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCAtttt                                                                           >  2:7048096/1‑93 (MQ=255)
                 aTGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCTTTGCTGCTGCCATTTTc                                                                          <  2:4899637/93‑1 (MQ=255)
                 aTGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTc                                                                          <  1:6182373/93‑1 (MQ=255)
                  tGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCg                                                                         <  1:2637486/93‑1 (MQ=255)
                   gcgcGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGa                                                                        >  2:3909949/1‑93 (MQ=255)
                      cgATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATaa                                                                     >  2:1064148/1‑93 (MQ=255)
                       gATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATaaa                                                                    <  2:2970166/93‑1 (MQ=255)
                       gATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATaaa                                                                    >  1:2565239/1‑93 (MQ=255)
                       gATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATaaa                                                                    <  1:4027651/93‑1 (MQ=255)
                       gATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATaaa                                                                    >  2:25286/1‑93 (MQ=255)
                       gATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATaaa                                                                    >  2:6919792/1‑93 (MQ=255)
                       gATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATaaa                                                                    >  1:926910/1‑93 (MQ=255)
                       gATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATaaa                                                                    >  2:5513223/1‑93 (MQ=255)
                        aTGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAg                                                                   >  1:6671270/1‑93 (MQ=255)
                         tGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGa                                                                  <  1:373370/93‑1 (MQ=255)
                         tGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGa                                                                  <  2:5672048/93‑1 (MQ=255)
                         tGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGa                                                                  <  2:5950126/93‑1 (MQ=255)
                          gTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGAt                                                                 <  1:5654338/93‑1 (MQ=255)
                          gTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGAt                                                                 <  2:1513388/93‑1 (MQ=255)
                          gTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGAt                                                                 >  1:1581771/1‑93 (MQ=255)
                             gctgctGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGt                                                              >  1:6595700/1‑93 (MQ=255)
                             gctgctGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGt                                                              <  2:272972/93‑1 (MQ=255)
                             gctgctGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGt                                                              <  2:5321900/93‑1 (MQ=255)
                              ctgctgACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGtt                                                             <  1:4532243/93‑1 (MQ=255)
                              ctgctgACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGtt                                                             <  2:2047367/93‑1 (MQ=255)
                               tgctgACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGttt                                                            >  1:7378583/1‑93 (MQ=255)
                                  tgACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGc                                                         >  2:2584360/1‑93 (MQ=255)
                                  tgACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGc                                                         >  1:6950434/1‑93 (MQ=255)
                                    aCCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGccc                                                       <  1:1173115/93‑1 (MQ=255)
                                    aCCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGccc                                                       <  1:2239561/93‑1 (MQ=255)
                                     ccGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCg                                                      <  1:6409928/93‑1 (MQ=255)
                                      cGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCgg                                                     <  2:2810568/93‑1 (MQ=255)
                                        tgatgaTAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGtt                                                   >  1:3524260/1‑93 (MQ=255)
                                         gatgatAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTg                                                  <  1:7316572/93‑1 (MQ=255)
                                           tgatAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGaa                                                <  1:7463671/93‑1 (MQ=255)
                                           tgatAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGaa                                                >  1:4787110/1‑93 (MQ=255)
                                           tgatAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGaa                                                <  2:5401280/93‑1 (MQ=255)
                                             atAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAAcc                                              >  2:1292538/1‑93 (MQ=255)
                                             atAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAAcc                                              <  2:3382559/93‑1 (MQ=255)
                                               aGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAg                                            >  2:4334035/1‑93 (MQ=255)
                                               aGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAg                                            >  2:316606/1‑93 (MQ=255)
                                                gTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGc                                           <  1:4269038/93‑1 (MQ=255)
                                                gTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGc                                           <  1:6512308/93‑1 (MQ=255)
                                                 tGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCg                                          <  1:2087863/93‑1 (MQ=255)
                                                 tGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCACTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCg                                          >  2:3101866/1‑93 (MQ=255)
                                                 tGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCg                                          >  2:3447944/1‑93 (MQ=255)
                                                  gACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGa                                         >  1:1125360/1‑93 (MQ=255)
                                                   aCATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGAc                                        >  1:3342749/1‑93 (MQ=255)
                                                    cATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGAcg                                       >  1:1721792/1‑93 (MQ=255)
                                                     aTTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGAcgc                                      >  2:3182735/1‑93 (MQ=255)
                                                      tttttCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGAcgcg                                     >  1:5765573/1‑93 (MQ=255)
                                                        tttCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGc                                   >  2:4602737/1‑93 (MQ=255)
                                                         ttcttcTGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCa                                  >  2:6240674/1‑93 (MQ=255)
                                                           cttctGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCaaa                                >  1:4374862/1‑93 (MQ=255)
                                                           cttctGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCaaa                                <  1:5397179/93‑1 (MQ=255)
                                                            ttctGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAAc                               <  1:4741631/93‑1 (MQ=255)
                                                            ttctGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAAc                               >  1:2029235/1‑93 (MQ=255)
                                                            ttctGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAAc                               <  1:2715089/93‑1 (MQ=255)
                                                              ctGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTc                             >  2:3271738/1‑93 (MQ=255)
                                                              ctGCTCGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTc                             <  2:7090943/93‑1 (MQ=255)
                                                                  tCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCg                         <  2:4221849/93‑1 (MQ=255)
                                                                   cGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGa                        <  1:2882784/93‑1 (MQ=255)
                                                                   cGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGa                        >  2:6843551/1‑93 (MQ=255)
                                                                   cGCCCAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGa                        >  1:3017684/1‑93 (MQ=255)
                                                                     cccAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGt                      <  2:5028641/93‑1 (MQ=255)
                                                                      ccAGAGTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGtt                     >  1:1558644/1‑93 (MQ=255)
                                                                      ccAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGtt                     >  2:2291744/1‑93 (MQ=255)
                                                                        agagTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCa                   >  1:2791305/1‑93 (MQ=255)
                                                                        agagTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCa                   >  2:3856422/1‑93 (MQ=255)
                                                                         gagTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCAc                  >  1:4984042/1‑93 (MQ=255)
                                                                         gagTCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCAc                  >  1:1278778/1‑93 (MQ=255)
                                                                            tCCGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCACGCt               >  2:1609320/1‑93 (MQ=255)
                                                                             ccGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCACGCtt              <  1:31096/93‑1 (MQ=255)
                                                                              cGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCACGCTTc             <  1:435566/93‑1 (MQ=255)
                                                                              cGGGCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCACGCTTc             <  2:5998117/93‑1 (MQ=255)
                                                                               gggCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCACGCTTCa            >  1:5844387/1‑93 (MQ=255)
                                                                               gggCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCACGCTTCa            >  1:7099342/1‑93 (MQ=255)
                                                                               gggCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCACGCTTCa            <  2:3559769/93‑1 (MQ=255)
                                                                               gggCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCACGCTTCa            >  2:7137675/1‑93 (MQ=255)
                                                                               gggCGAGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCACGCTTCa            <  2:1863425/93‑1 (MQ=255)
                                                                                   gAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCACGCTTCAGCGt        >  1:3444956/1‑93 (MQ=255)
                                                                                    aGTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCACGCTTCAGCGta       >  1:5620248/1‑93 (MQ=255)
                                                                                    aGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCACGCTTCAGCGta       <  1:1949183/93‑1 (MQ=255)
                                                                                     gTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCACGCTTCAGCGtat      <  2:350431/93‑1 (MQ=255)
                                                                                     gTAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCACGCTTCAGCGtat      <  2:872256/93‑1 (MQ=255)
                                                                                      tAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCACGCTTCAGCGtata     <  2:3728563/93‑1 (MQ=255)
                                                                                      tAGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCACGCTTCAGCGtata     <  2:1707017/93‑1 (MQ=255)
                                                                                       aGGGCGTTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCACGCTTCAGCGTATAg    <  2:6333300/93‑1 (MQ=255)
                                                                                            |                                                                                         
GGCGCGTCTTTCAGCAAATGCGCGATGTAGCTGCTGACCGTGATGATAGTGACATTTTTCTTCTGCTCGCCCAGAGTCCGGGCGAGTAGGGCATTGCTGCTGCCATTTTCGATAAAGATGGTTTCGCCCGGTTGAACCAGCGACGCGGCAAACTCGGCGAGTTCACGCTTCAGCGTATAGTT  >  NC_000913/1341985‑1342166

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑