Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,705,052 T→C V37A (GTA→GCA)  b1629 → putative membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,705,0520TC88.0% 577.2 / 60.5 267V37A (GTA→GCA) b1629putative membrane protein
Reads supporting (aligned to +/- strand):  ref base T (12/19);  new base C (106/121);  total (127/140)
Fisher's exact test for biased strand distribution p-value = 4.47e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.22e-01

Only 100 of 269 total aligned reads displayed.

TGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGC  >  NC_000913/1704960‑1705143
                                                                                             |                                                                                           
 gCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTa                                                                                            >  1:1191684/1‑93 (MQ=255)
  cATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCAc                                                                                           >  2:2341991/1‑93 (MQ=255)
    ttCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCAccc                                                                                         <  1:5130593/93‑1 (MQ=255)
    ttCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCAccc                                                                                         <  1:1851613/93‑1 (MQ=255)
       aGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTg                                                                                      >  1:1067969/1‑93 (MQ=255)
       aGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTg                                                                                      <  2:921146/93‑1 (MQ=255)
        gAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTTCAACGGTACACCCCTGCGCCAGGCACCCCTgg                                                                                     <  1:225533/93‑1 (MQ=255)
        gAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTgg                                                                                     >  2:5882736/1‑93 (MQ=255)
        gAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTgg                                                                                     <  1:7400160/93‑1 (MQ=255)
          aaaaaTAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGgcg                                                                                   >  2:7251143/1‑93 (MQ=255)
            aaataaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCa                                                                                 <  1:6773126/93‑1 (MQ=255)
            aaataaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCa                                                                                 >  1:7172681/1‑93 (MQ=255)
            aaataaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCCGGCGCa                                                                                 >  1:5362518/1‑93 (MQ=255)
             aataaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAg                                                                                >  2:3560779/1‑93 (MQ=255)
              ataaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCCGCGACCCCCGCCGCAGc                                                                               >  2:1518316/1‑93 (MQ=255)
              ataaaatCTGGGATTCCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGc                                                                               <  2:1800839/93‑1 (MQ=255)
               taaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCg                                                                              >  1:992660/1‑93 (MQ=255)
                aaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGGCGCCAGGCACCCCTGCGGCAGCg                                                                              >  2:6059389/1‑93 (MQ=255)
                aaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCCGCAAGCAACCCCGGCGCcgcgg                                                                             >  1:3031095/1‑92 (MQ=255)
                 aaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGtt                                                                            <  1:1983906/93‑1 (MQ=255)
                  aatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGttt                                                                           <  1:3410091/93‑1 (MQ=255)
                   atCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGtttt                                                                          >  2:1973669/1‑93 (MQ=255)
                   atCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGtttt                                                                          <  2:6721048/93‑1 (MQ=255)
                    tCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTg                                                                         <  2:3126236/93‑1 (MQ=255)
                    tCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTg                                                                         >  1:7324250/1‑93 (MQ=255)
                     cTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGt                                                                        <  1:1517249/93‑1 (MQ=255)
                      tGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGGACCCCTCGCGCAGCGGTTTGtt                                                                       >  1:6697397/1‑93 (MQ=255)
                        ggATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTAt                                                                     <  2:1813895/93‑1 (MQ=255)
                         gATTTCAACGGCGGCATCCATCCACCGGCGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTAtt                                                                    >  2:5630288/1‑93 (MQ=255)
                          aTTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTc                                                                   >  2:3614135/1‑93 (MQ=255)
                          aTTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTc                                                                   <  2:6796176/93‑1 (MQ=255)
                          aTTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTc                                                                   >  2:5936230/1‑93 (MQ=255)
                           tttCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCCCGGACCCCCGGCGCCGCGGTTTGTtttttc                                                                  >  2:3987627/1‑91 (MQ=255)
                           tttCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTcc                                                                  >  2:2404573/1‑93 (MQ=255)
                            ttCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCa                                                                 <  1:5914687/93‑1 (MQ=255)
                            ttCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCa                                                                 >  2:3496623/1‑93 (MQ=255)
                            ttCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCa                                                                 <  2:1260037/93‑1 (MQ=255)
                             tCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCAc                                                                <  1:6898945/93‑1 (MQ=255)
                              cAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACt                                                               <  2:4373899/93‑1 (MQ=255)
                              cAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACt                                                               <  1:2112958/93‑1 (MQ=255)
                               aaCGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTg                                                              >  2:3225396/1‑93 (MQ=255)
                                  ggcggcATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGaaa                                                           <  2:5106768/93‑1 (MQ=255)
                                     ggcATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAg                                                        >  1:1558592/1‑93 (MQ=255)
                                       catccatcCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCa                                                      <  2:3294147/93‑1 (MQ=255)
                                       catccatcCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCa                                                      <  2:6580570/93‑1 (MQ=255)
                                       catccatcCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCa                                                      <  1:1701675/93‑1 (MQ=255)
                                       catccatcCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCa                                                      <  2:6471315/93‑1 (MQ=255)
                                         tccatccaCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCata                                                    >  2:4969842/1‑93 (MQ=255)
                                         tccatccaCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCata                                                    <  1:4333657/93‑1 (MQ=255)
                                           catccaCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATAtt                                                  <  2:2129632/93‑1 (MQ=255)
                                             tccaCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCCGGCGCCGCGGTTTGTTATTTCACTGAAACAGCATAtttg                                                >  2:2452481/1‑91 (MQ=255)
                                             tccaCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCCGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTgg                                                >  2:1618918/1‑93 (MQ=255)
                                              ccaCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGgc                                               <  1:6468451/93‑1 (MQ=255)
                                              ccaCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGgc                                               <  2:2222670/93‑1 (MQ=255)
                                               caCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGgcg                                              <  1:6145353/93‑1 (MQ=255)
                                                aCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGgcgc                                             <  1:873069/93‑1 (MQ=255)
                                                   ggAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCCGGCGCAGCGTTTTTTTATTTCCCTCAAACAGCATATTGGCGCTGa                                          >  1:4414875/1‑93 (MQ=255)
                                                    gagaTGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGaa                                         <  2:1702241/93‑1 (MQ=255)
                                                     agaTGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAg                                        <  1:1133395/93‑1 (MQ=255)
                                                     agaTGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAg                                        <  1:6278098/93‑1 (MQ=255)
                                                      gaTGAAAGCCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCCCTGAAACAGCATATTGGCGCTGAAgg                                       <  1:3659957/93‑1 (MQ=255)
                                                      gaTGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTTCACTGAAACAGCATATTGGCGCTGAAgg                                       >  1:3188320/1‑93 (MQ=255)
                                                      gaTGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAgg                                       <  2:2724806/93‑1 (MQ=255)
                                                       aTGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGt                                      <  2:6364554/93‑1 (MQ=255)
                                                        tGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAgggg                                     >  2:6542814/1‑91 (MQ=255)
                                                          aaaaCCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCCGCGGTTTGTTATTTCACTGAAACAGCATATTGGGGCTGAAGGTGAg                                   >  2:6750672/1‑93 (MQ=255)
                                                           aaaCCCAGTCCGACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGt                                  >  2:4656534/1‑93 (MQ=255)
                                                           aaaCCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGt                                  <  2:3883595/93‑1 (MQ=255)
                                                             aCCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTtg                                >  2:4244463/1‑93 (MQ=255)
                                                              cccAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTtgt                               <  1:2573982/93‑1 (MQ=255)
                                                               ccAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTtgtg                              >  2:7402637/1‑93 (MQ=255)
                                                                 aGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCg                            >  2:7275420/1‑93 (MQ=255)
                                                                  gTCCAACGGTACACCCCTGCGCCCGGCACCCCCGGCGCAGCGTTTTGTTTTTTCACTTAAACAACATATTGGCGCTGAAGGTGAGGTGTGCGt                           >  2:110456/1‑93 (MQ=255)
                                                                  gTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGt                           <  1:3536838/93‑1 (MQ=255)
                                                                   tCCAACGGTACACCCCTGCGCCAGGCACCCCTGTCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGtt                          <  2:2902618/93‑1 (MQ=255)
                                                                   tCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGtt                          <  2:572097/93‑1 (MQ=255)
                                                                    ccAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTa                         <  2:5787568/93‑1 (MQ=255)
                                                                     cAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAg                        <  1:4142572/93‑1 (MQ=255)
                                                                     cAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGGGAGGTGTGCGTTAg                        >  1:428253/1‑93 (MQ=255)
                                                                       aCGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCg                      <  2:4055440/93‑1 (MQ=255)
                                                                        cGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGt                     <  1:5860183/93‑1 (MQ=255)
                                                                        cGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGt                     <  1:394190/93‑1 (MQ=255)
                                                                         ggTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTc                    <  2:6146757/93‑1 (MQ=255)
                                                                          gTACACCCCTGCGCCCGGCACCCCCGGCGCAGCGGTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCg                   >  2:175453/1‑93 (MQ=255)
                                                                            acacCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCCGc                 <  2:4734103/93‑1 (MQ=255)
                                                                              acCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGa               <  1:1257474/93‑1 (MQ=255)
                                                                               ccccTGCGCCAGGTACCCCTGGCGCAGCGTTTTTTTTTTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGGCGGCGAt              >  2:1310665/1‑93 (MQ=255)
                                                                               ccccTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGAt              >  2:7513902/1‑93 (MQ=255)
                                                                               ccccTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGAt              >  1:283747/1‑93 (MQ=255)
                                                                                 ccTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATaa            >  2:988240/1‑93 (MQ=255)
                                                                                  cTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATaaa           <  2:5222869/93‑1 (MQ=255)
                                                                                  cTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATaaa           >  2:3406061/1‑93 (MQ=255)
                                                                                  cTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATaaa           >  2:2056287/1‑93 (MQ=255)
                                                                                  cTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATaaa           <  1:7232103/93‑1 (MQ=255)
                                                                                       gcCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTAt       <  1:100413/93‑1 (MQ=255)
                                                                                        ccAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTAtt      <  1:950621/93‑1 (MQ=255)
                                                                                        ccAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTAtt      <  1:5549482/93‑1 (MQ=255)
                                                                                          aGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTgc    >  1:4790433/1‑93 (MQ=255)
                                                                                            gTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTgcgc  <  2:6921733/93‑1 (MQ=255)
                                                                                            gTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTgcgc  <  1:5213929/93‑1 (MQ=255)
                                                                                             |                                                                                           
TGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGC  >  NC_000913/1704960‑1705143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: