BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,730,968	T→C	S1286S (AGT→AGC)	lhr →	Lhr

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,730,968	0	T	C	91.7%	670.4 / 43.1	242	S1286S (AGT→AGC)	lhr	Lhr
Reads supporting (aligned to +/- strand): ref base T (13/7); new base C (118/104); total (131/111)
Fisher's exact test for biased strand distribution p-value = 3.55e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.58e-01

Only 100 of 244 total aligned reads displayed.

TCTGCCCTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGTTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTATCTTA  >  NC_000913/1730876‑1731057

tctGCCCTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGt                                                                                           >  2:1397046/1‑93 (MQ=255)

   gCCCTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTcc                                                                                        <  2:7022533/93‑1 (MQ=255)

   gCCCTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTcc                                                                                        >  1:1902404/1‑93 (MQ=255)

    cccTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCa                                                                                       <  1:5427339/93‑1 (MQ=255)

     ccTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCaa                                                                                      <  1:143129/93‑1 (MQ=255)

      cTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAac                                                                                     >  2:6178346/1‑93 (MQ=255)

        gCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAacgc                                                                                   >  2:4778275/1‑93 (MQ=255)

         cAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAacgca                                                                                  >  1:1035536/1‑93 (MQ=255)

         cAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAacgca                                                                                  <  1:1407304/93‑1 (MQ=255)

          aaGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAacgcac                                                                                 >  1:2290548/1‑93 (MQ=255)

           agagGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAacgcacg                                                                                >  1:2138779/1‑93 (MQ=255)

            gagGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAacgcacgc                                                                               >  2:3268032/1‑93 (MQ=255)

            gagGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAacccacgc                                                                               <  2:4594639/93‑1 (MQ=255)

              ggCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACgcacgcac                                                                             >  1:3120802/1‑93 (MQ=255)

                   tATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCaa                                                                        >  2:4031545/1‑93 (MQ=255)

                    aTGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAAc                                                                       >  1:5172119/1‑93 (MQ=255)

                        gcgcTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTcgc                                                                   <  1:4049093/93‑1 (MQ=255)

                        gcgcTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCG‑CCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTcgcc                                                                  <  1:5610651/93‑1 (MQ=255)

                           cTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTcgccgc                                                                <  1:4529599/93‑1 (MQ=255)

                            tGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCa                                                               <  2:286159/93‑1 (MQ=255)

                             ggTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAg                                                              >  1:4773990/1‑93 (MQ=255)

                              gTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGt                                                             >  1:6808191/1‑93 (MQ=255)

                               tCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTc                                                            >  1:4132246/1‑93 (MQ=255)

                                 tGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCAc                                                          <  2:6887262/93‑1 (MQ=255)

                                 tGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCAc                                                          >  2:6115808/1‑93 (MQ=255)

                                  ggCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCAcc                                                         >  2:1826478/1‑93 (MQ=255)

                                  ggCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCAcc                                                         >  1:3250616/1‑93 (MQ=255)

                                   gCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCg                                                        <  1:6082197/93‑1 (MQ=255)

                                   gCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCg                                                        >  2:542888/1‑93 (MQ=255)

                                    cAAGGCGTCATCACCAGCGACATTTGGGCACCGTTCCGCGCCCTCACCCGCAGCAGTTCCAACGCACGCACCTCAACTCGCCGCAGTCACCgg                                                       <  1:2745395/93‑1 (MQ=255)

                                     aaGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGTTCCAACGCACGCACCTCAACTCGCCGCAGTCACCggg                                                      >  2:904659/1‑93 (MQ=255)

                                      aGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGc                                                     <  1:1043653/93‑1 (MQ=255)

                                      aGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGc                                                     <  1:2386032/93‑1 (MQ=255)

                                       ggCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCt                                                    >  2:1723036/1‑93 (MQ=255)

                                        gCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCtc                                                   <  1:3627625/93‑1 (MQ=255)

                                           tcatcaCCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCtcgtc                                                <  1:5850191/93‑1 (MQ=255)

                                           tcatcaCCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCtcgtc                                                >  2:254396/1‑93 (MQ=255)

                                            catcaCCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCGCGCACCTCAACTCGCCGCAGTCACCGGGCtcgtcg                                               >  1:3878823/1‑93 (MQ=255)

                                             atcaCCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTcgtcgt                                              >  2:206448/1‑93 (MQ=255)

                                                aCCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGTTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGa                                           <  2:5679882/93‑1 (MQ=255)

                                                aCCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGa                                           <  2:1978110/93‑1 (MQ=255)

                                                  cAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACg                                         >  1:978680/1‑93 (MQ=255)

                                                  cAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACg                                         >  1:3069293/1‑93 (MQ=255)

                                                   aGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGt                                        >  2:7351127/1‑93 (MQ=255)

                                                    gCGTCATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTc                                       <  2:3840876/93‑1 (MQ=255)

                                                    gCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTc                                       <  1:4381253/93‑1 (MQ=255)

                                                     cGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGTTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTcc                                      <  2:1532210/93‑1 (MQ=255)

                                                     cGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTcc                                      <  2:2161969/93‑1 (MQ=255)

                                                      gACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCt                                     <  2:1656821/93‑1 (MQ=255)

                                                      gACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGCCACCGGGCTCGTCGTGGACGTCCt                                     >  1:1281769/1‑93 (MQ=255)

                                                          tttGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCt                                 >  2:6771277/1‑93 (MQ=255)

                                                           ttGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTa                                <  2:3332803/93‑1 (MQ=255)

                                                           ttGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTa                                <  2:1308676/93‑1 (MQ=255)

                                                           ttGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTa                                <  1:4610488/93‑1 (MQ=255)

                                                            tGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTAt                               <  2:6069238/93‑1 (MQ=255)

                                                            tGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTAt                               <  1:6435149/93‑1 (MQ=255)

                                                             gggCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATg                              <  2:1207112/93‑1 (MQ=255)

                                                                cACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATgcgc                           <  1:6625700/93‑1 (MQ=255)

                                                                 aCCGTTACGCGCCCTCACCCGCAGCAGTTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCa                          >  1:1865940/1‑93 (MQ=255)

                                                                 aCCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCACCTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCa                          <  2:4292769/93‑1 (MQ=255)

                                                                 aCCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCa                          >  1:3567227/1‑93 (MQ=255)

                                                                 aCCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCa                          >  2:715679/1‑93 (MQ=255)

                                                                 aCCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCa                          >  2:2628180/1‑93 (MQ=255)

                                                                    gTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCCCCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAAcc                       <  2:528937/93‑1 (MQ=255)

                                                                    gTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAAcc                       >  1:5965347/1‑93 (MQ=255)

                                                                     ttACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAAccc                      >  1:6200144/1‑93 (MQ=255)

                                                                     ttACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAAccc                      >  2:6256082/1‑93 (MQ=255)

                                                                      tACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCg                     <  1:891897/93‑1 (MQ=255)

                                                                         gcgcCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGtct                  <  2:3837906/93‑1 (MQ=255)

                                                                         gcgcCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGtct                  >  2:2756092/1‑93 (MQ=255)

                                                                         gcgcCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGtct                  <  2:2722362/93‑1 (MQ=255)

                                                                          cgcCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGtctc                 >  2:4538125/1‑93 (MQ=255)

                                                                           gcCCTCACCCGCAGCAGTTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTcg                >  1:1623771/1‑93 (MQ=255)

                                                                           gcCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTcg                >  2:3977646/1‑93 (MQ=255)

                                                                           gcCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTcg                >  1:2765796/1‑93 (MQ=255)

                                                                           gcCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTcg                >  2:2226723/1‑93 (MQ=255)

                                                                           gcCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTcg                >  1:781588/1‑93 (MQ=255)

                                                                            cccTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTcgc               <  1:4093831/93‑1 (MQ=255)

                                                                             ccTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTcgcc              <  1:1953645/93‑1 (MQ=255)

                                                                             ccTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTcgcc              <  2:5757844/93‑1 (MQ=255)

                                                                              cTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTcgccg             >  2:4129488/1‑93 (MQ=255)

                                                                              cTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTcgccg             >  1:1711834/1‑93 (MQ=255)

                                                                               tCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTcgccgc            <  2:5916129/93‑1 (MQ=255)

                                                                                cACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCcgcg           <  1:4204352/93‑1 (MQ=255)

                                                                                 aCCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCgg          >  1:7180820/1‑93 (MQ=255)

                                                                                 aCCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCgg          <  1:537668/93‑1 (MQ=255)

                                                                                  cccGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCggg         <  1:7083136/93‑1 (MQ=255)

                                                                                  cccGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCggg         <  1:2254409/93‑1 (MQ=255)

                                                                                  cccGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCggg         <  2:6392761/93‑1 (MQ=255)

                                                                                  cccGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCggg         <  1:7333623/93‑1 (MQ=255)

                                                                                   ccGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGt        <  1:4970759/93‑1 (MQ=255)

                                                                                     gcagcaGTTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTAt      >  2:6285411/1‑93 (MQ=255)

                                                                                     gcagcaGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTAt      >  1:4692116/1‑93 (MQ=255)

                                                                                      cagcagCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTATc     <  2:5570820/93‑1 (MQ=255)

                                                                                        gcagCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTATCtt   >  2:2309834/1‑93 (MQ=255)

                                                                                        gcagCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTATCtt   >  2:2499476/1‑93 (MQ=255)

                                                                                         cagCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTATCTTa  <  2:4865870/93‑1 (MQ=255)

                                                                                         cagCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTATCTTa  >  1:4175147/1‑93 (MQ=255)

                                                                                         cagCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTATCTTa  <  2:3918317/93‑1 (MQ=255)

                                                                                         cagCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTATCTTa  <  2:3095648/93‑1 (MQ=255)

TCTGCCCTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGTTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTATCTTA  >  NC_000913/1730876‑1731057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`