BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,778,705	T→C	L94P (CTG→CCG)	ydiR →	putative flavoprotein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,778,705	0	T	C	87.2%	553.4 / 70.2	226	L94P (CTG→CCG)	ydiR	putative flavoprotein
Reads supporting (aligned to +/- strand): ref base T (17/12); new base C (101/96); total (118/108)
Fisher's exact test for biased strand distribution p-value = 5.52e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.23e-01

Only 100 of 226 total aligned reads displayed.

ACTGAAAATTACGCCGAAAGCATTGCTGCCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCTGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATGGTCACATTTGCGCCGAAC  >  NC_000913/1778614‑1778794

aCTGAAAATTACGCCGAAAGCATTGCTGCCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCTg                                                                                          >  1:1052884/1‑93 (MQ=255)

 cTGAAAATTACGCCGAAAGCATTGCTGCCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCTgg                                                                                         >  1:4404674/1‑93 (MQ=255)

 cTGAAAATTACGCCGAAAGCATTGCTGCCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCgg                                                                                         <  1:5594846/93‑1 (MQ=255)

 cTGAAAATTACGCCGAAAGCATTGCTGCCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCgg                                                                                         >  1:1524658/1‑93 (MQ=255)

  tGAAAATTACGCCGAAAGCATTGCTGCCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGgc                                                                                        >  1:3558122/1‑93 (MQ=255)

   gAAAATTACGCCGAAAGCATTGCTGCCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGgca                                                                                       <  1:5104849/93‑1 (MQ=255)

   gAAAATTACGCCGAAAGCATTGCTGCCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGgca                                                                                       >  1:6038736/1‑93 (MQ=255)

   gAAAATTACGCCGAAAGCATTGCTGCCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGgca                                                                                       <  2:398547/93‑1 (MQ=255)

   gAAAATTACGCCGAAAGCATTGCTGCCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGgca                                                                                       <  2:4564029/93‑1 (MQ=255)

     aaaTTACGCCGAAAGCATTGCTGCCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGgcagc                                                                                     <  2:1048563/93‑1 (MQ=255)

      aaTTACGCCGAAAGCATTGCTGCCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCTGgcagca                                                                                    <  2:5007019/93‑1 (MQ=255)

      aaTTACGCCGAAAGCATTGCTGCCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGgcagca                                                                                    >  1:3456060/1‑93 (MQ=255)

        ttACGCCGAAAGCATTGCTGCCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACg                                                                                  >  1:1450393/1‑93 (MQ=255)

          aCGCCGAAAGCATTGCTGCCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGt                                                                                <  1:5707578/93‑1 (MQ=255)

          aCGCCGAAAGCATTGCTGCCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGt                                                                                <  2:3609886/93‑1 (MQ=255)

             ccGAAAGCATTGCTGCCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTaa                                                                             >  1:6707563/1‑93 (MQ=255)

                aaaGCATTGCTGCCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAgtg                                                                          >  1:2435628/1‑93 (MQ=255)

                 aaGCATTGCTGCCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAgtgt                                                                         <  2:4445790/93‑1 (MQ=255)

                 aaGCATTGCTGCCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAgtgt                                                                         <  1:6271698/93‑1 (MQ=255)

                 aaGCATTGCTGCCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAgtgt                                                                         <  1:4262271/93‑1 (MQ=255)

                  aGCATTGCTGCCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGtgtg                                                                        >  2:3474185/1‑93 (MQ=255)

                  aGCATTGCTGCCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGtgtg                                                                        >  1:5736590/1‑93 (MQ=255)

                    cATTGCTGCCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCa                                                                      <  2:5909015/93‑1 (MQ=255)

                     aTTGCTGCCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCaa                                                                     >  2:4573979/1‑93 (MQ=255)

                       tgctgcCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCTGGCAGCACGGTTAAGTGTGCAACt                                                                   <  2:125142/93‑1 (MQ=255)

                        gctgcCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTg                                                                  <  1:2086748/93‑1 (MQ=255)

                         ctgcCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCTGGCAGCACGGTTAAGTGTGCAACTGa                                                                 <  1:4558943/93‑1 (MQ=255)

                          tgcCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGaa                                                                <  1:2659638/93‑1 (MQ=255)

                          tgcCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGaa                                                                <  2:6693111/93‑1 (MQ=255)

                            cccTGCTGAAAGATAAGCACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATg                                                              <  2:647256/93‑1 (MQ=255)

                              ctgctgAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATgcg                                                            <  1:4294403/93‑1 (MQ=255)

                               tgctgAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATgcgg                                                           >  1:3241971/1‑93 (MQ=255)

                                gctgAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATgcggc                                                          <  2:2904274/93‑1 (MQ=255)

                                gctgAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATgcggc                                                          <  1:6143010/93‑1 (MQ=255)

                                 ctgAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATgcggcg                                                         >  1:7065690/1‑93 (MQ=255)

                                  tgAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGgcgc                                                        <  2:2591241/93‑1 (MQ=255)

                                   gAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCt                                                       >  1:5881295/1‑93 (MQ=255)

                                     aaGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTgg                                                     >  1:375357/1‑93 (MQ=255)

                                      aGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGt                                                    >  2:6224531/1‑93 (MQ=255)

                                       gATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTg                                                   >  1:2369557/1‑93 (MQ=255)

                                         tAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGaa                                                 >  1:4116445/1‑93 (MQ=255)

                                         tAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGaa                                                 <  1:2058161/93‑1 (MQ=255)

                                           aaCACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACg                                               >  1:1140048/1‑93 (MQ=255)

                                            acacCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAATTGTGCAACTGAATGCGGCGCTGGTGAACGa                                              <  1:4392719/93‑1 (MQ=255)

                                            acacCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGa                                              >  1:6842785/1‑93 (MQ=255)

                                            acacCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGa                                              >  2:1328885/1‑93 (MQ=255)

                                             cacCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGAt                                             >  1:5224306/1‑93 (MQ=255)

                                             cacCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGAt                                             <  2:4775876/93‑1 (MQ=255)

                                             cacCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGAt                                             <  2:4957752/93‑1 (MQ=255)

                                                cccGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGcc                                          >  2:68622/1‑93 (MQ=255)

                                                cccGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGcc                                          >  2:1874997/1‑93 (MQ=255)

                                                cccGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGcc                                          >  2:5865929/1‑93 (MQ=255)

                                                  cGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCTGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCAc                                        <  2:6394923/93‑1 (MQ=255)

                                                  cGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCAc                                        <  1:271417/93‑1 (MQ=255)

                                                     tATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCTGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCAcggc                                     >  2:1130729/1‑93 (MQ=255)

                                                     tATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCAcggc                                     >  1:7241077/1‑93 (MQ=255)

                                                      aTGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCAcggcg                                    >  2:5173548/1‑93 (MQ=255)

                                                       tGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCAcggcgg                                   <  1:4365930/93‑1 (MQ=255)

                                                       tGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCAcggcgg                                   >  2:5729420/1‑93 (MQ=255)

                                                       tGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCAcggcgg                                   >  1:1486944/1‑93 (MQ=255)

                                                       tGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCAcggcgg                                   >  1:4849071/1‑93 (MQ=255)

                                                        gTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGt                                  <  2:2044641/93‑1 (MQ=255)

                                                         ttGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTg                                 <  1:8284/93‑1 (MQ=255)

                                                         ttGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTg                                 <  1:6945312/93‑1 (MQ=255)

                                                         ttGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTg                                 <  1:5011434/93‑1 (MQ=255)

                                                          tGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTgg                                >  2:5333049/1‑93 (MQ=255)

                                                          tGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTgg                                <  2:7317552/93‑1 (MQ=255)

                                                            cTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGat                              >  2:7186761/1‑93 (MQ=255)

                                                            cTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGat                              <  2:4002837/93‑1 (MQ=255)

                                                            cTGTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGat                              <  2:4078542/93‑1 (MQ=255)

                                                             tGTTGGCCGCGACGAAACGTGGTAAAGCGCTGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGata                             >  2:6056414/1‑93 (MQ=255)

                                                              gTTGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGatat                            <  1:6570533/93‑1 (MQ=255)

                                                               ttGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATAtt                           <  2:6538635/93‑1 (MQ=255)

                                                               ttGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATAtt                           <  1:2864858/93‑1 (MQ=255)

                                                               ttGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATAtt                           <  1:1720770/93‑1 (MQ=255)

                                                               ttGGCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATAtt                           <  1:4172841/93‑1 (MQ=255)

                                                                tGGCCGCGACGAAACGTGGTAAAGCGCTGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTg                          >  1:1390017/1‑93 (MQ=255)

                                                                 ggCCGCGACGAAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGt                         >  2:1619744/1‑93 (MQ=255)

                                                                      cgacgaAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATg                    <  1:1613345/93‑1 (MQ=255)

                                                                        acgaAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATGGt                  >  2:7095229/1‑93 (MQ=255)

                                                                         cgaAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATGGTc                 >  1:5472184/1‑93 (MQ=255)

                                                                         cgaAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATGGTc                 >  2:6288269/1‑93 (MQ=255)

                                                                         cgaAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATGGTc                 >  1:3946398/1‑93 (MQ=255)

                                                                          gaAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATGTTGTCGATGGTca                >  1:2814372/1‑93 (MQ=255)

                                                                          gaAACGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATGGTca                <  1:5143925/93‑1 (MQ=255)

                                                                           aaaCGTGGTAAAGCGCTGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATGGTcac               >  2:6349430/1‑93 (MQ=255)

                                                                           aaaCGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATGGTcac               >  2:2686384/1‑93 (MQ=255)

                                                                           aaaCGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATGGTcac               >  2:3577840/1‑93 (MQ=255)

                                                                            aaCGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATGGTcaca              >  2:1769843/1‑93 (MQ=255)

                                                                            aaCGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATGGTcaca              <  2:1009520/93‑1 (MQ=255)

                                                                            aaCGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGCGAACGATGCCACGGCGGTGGATATTGTCGATGGTcaca              >  1:3820765/1‑93 (MQ=255)

                                                                              cGTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATGGTCACAtt            <  2:1889776/93‑1 (MQ=255)

                                                                               gTGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGCGGATATTGTCGATGGTCACAttt           >  1:3032027/1‑93 (MQ=255)

                                                                                tGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATGGTCACATTTg          <  1:4434928/93‑1 (MQ=255)

                                                                                tGGTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATGGTCACATTTg          <  2:3418965/93‑1 (MQ=255)

                                                                                 ggTAAAGCGCTGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATGGTCACATTTgc         <  1:3309343/93‑1 (MQ=255)

                                                                                  gTAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATGGTCACATTTgcg        <  2:2447126/93‑1 (MQ=255)

                                                                                   tAAAGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATGGTCACATTTgcgc       <  1:2894554/93‑1 (MQ=255)

                                                                                     aaGCGCCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATGGTCACATTTGCGCCg     >  1:1953447/1‑93 (MQ=255)

                                                                                        cgcCGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATGGTCACATTTGCGCCGAac  <  1:2116383/93‑1 (MQ=255)

ACTGAAAATTACGCCGAAAGCATTGCTGCCCTGCTGAAAGATAAACACCCCGCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCGCTGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGTGAACGATGCCACGGCGGTGGATATTGTCGATGGTCACATTTGCGCCGAAC  >  NC_000913/1778614‑1778794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`