Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,059,510 T→C E149G (GAG→GGG)  nac ← nitrogen assimilation control protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,059,5100TC85.5% 640.0 / 98.5 270E149G (GAG→GGG) nacnitrogen assimilation control protein
Reads supporting (aligned to +/- strand):  ref base T (20/19);  new base C (97/133);  total (117/153)
Fisher's exact test for biased strand distribution p-value = 3.00e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.45e-01

Only 100 of 270 total aligned reads displayed.

AACGCTTTGCCCCGGGCAATCTTGAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCTCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGAAGATAGATAACGATCTCCGG  >  NC_000913/2059419‑2059601
                                                                                           |                                                                                           
 aCGCTTTGCCCCGGGCAATCTTGAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCTCa                                                                                           <  2:3101177/93‑1 (MQ=255)
 aCGCTTTGCCCCGGGCAATCTTGAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCa                                                                                           <  2:6163712/93‑1 (MQ=255)
 aCGCTTTGCCCCGGGCAATCTTGAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCa                                                                                           <  2:1808912/93‑1 (MQ=255)
  cGCTTTGCCCCGGGCAATCTTGAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCAt                                                                                          >  2:6075062/1‑93 (MQ=255)
   gCTTTGCCCCGGGCAATCTTGAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATa                                                                                         <  2:7418041/93‑1 (MQ=255)
   gCTTTGCCCCGGGCAATCTTGAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATa                                                                                         <  1:4298372/93‑1 (MQ=255)
    cTTTGCCCCGGGCAATCTTGAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATaa                                                                                        >  1:3899580/1‑93 (MQ=255)
     tttGCCCCGGGCAATCTTGAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATaaa                                                                                       >  1:7097767/1‑93 (MQ=255)
       tGCCCCGGGCAATCTTGAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCTCATAAATc                                                                                     >  1:4781358/1‑93 (MQ=255)
        cccccGGGCAATCTTGAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCTCATAAATCa                                                                                    <  1:5637682/92‑1 (MQ=255)
          cccGGGCAATCTTGAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCTCATAAATCAcc                                                                                  <  2:7509238/93‑1 (MQ=255)
          cccGGGCAATCTTGAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCAcc                                                                                  <  2:2996983/93‑1 (MQ=255)
          cccGGGCAATCTTGAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCAcc                                                                                  <  2:2473289/93‑1 (MQ=255)
          cccGGGCAATCTTGAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCAcc                                                                                  >  1:3035877/1‑93 (MQ=255)
           ccGGGCAATCTTGAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCTCATAAATCACCg                                                                                 <  2:4663988/93‑1 (MQ=255)
           ccGGGCAATCTTGAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCg                                                                                 >  1:6757206/1‑93 (MQ=255)
            cGGGCAATCTTGAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGc                                                                                >  1:2945799/1‑93 (MQ=255)
             gggCAATCTTGAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGcc                                                                               <  2:1857526/93‑1 (MQ=255)
             gggCAATCTTGAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGcc                                                                               >  1:4722867/1‑93 (MQ=255)
               gCAATCTTGAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCat                                                                             <  1:4031741/93‑1 (MQ=255)
                 aaTCTTGAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCTCATAAATCACCGCCatat                                                                           >  1:7039819/1‑93 (MQ=255)
                 aaTCTTGAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCatat                                                                           <  2:1791861/93‑1 (MQ=255)
                  aTCTTGAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCTCATAAATCACCGCCATATc                                                                          >  1:3346794/1‑93 (MQ=255)
                  aTCTTGAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATc                                                                          >  2:2373002/1‑93 (MQ=255)
                   tCTTGAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACGGGGGAATGCTCATAAATCACCGCCATATCg                                                                         >  1:1007838/1‑93 (MQ=255)
                    cTTGAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACCCCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGa                                                                        <  1:1414623/93‑1 (MQ=255)
                    cTTGAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGa                                                                        <  1:5166606/93‑1 (MQ=255)
                       gAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCTCATAAATCACCGCCATATCGAGtt                                                                     >  2:2646727/1‑93 (MQ=255)
                       gAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGtt                                                                     <  2:219249/93‑1 (MQ=255)
                        aGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTg                                                                    <  1:6193858/93‑1 (MQ=255)
                        aGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTg                                                                    >  2:7036531/1‑93 (MQ=255)
                         gTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTgg                                                                   >  1:6501888/1‑93 (MQ=255)
                         gTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTgg                                                                   <  1:3992333/93‑1 (MQ=255)
                           tCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTg                                                                 <  2:51071/93‑1 (MQ=255)
                           tCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTg                                                                 >  2:3264553/1‑93 (MQ=255)
                            ccTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACCCCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGa                                                                <  1:6587855/93‑1 (MQ=255)
                              tACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGAtt                                                              >  2:188617/1‑93 (MQ=255)
                              tACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGAtt                                                              <  2:2021225/93‑1 (MQ=255)
                                 cAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTAt                                                           >  1:5518887/1‑93 (MQ=255)
                                 cAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTAt                                                           >  2:5253745/1‑93 (MQ=255)
                                 cAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTAt                                                           <  2:1121717/93‑1 (MQ=255)
                                  aGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCTCATAAATCACCGCCATATCGAGTTGGTGATTTATc                                                          >  2:5586188/1‑93 (MQ=255)
                                  aGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATc                                                          >  1:7315928/1‑93 (MQ=255)
                                    aaaaaGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCaa                                                        <  2:4238441/93‑1 (MQ=255)
                                       aaGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAAttt                                                     >  2:7316249/1‑93 (MQ=255)
                                          aTCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGCTTTATCGATTTTTc                                                  <  2:6443708/93‑1 (MQ=255)
                                           tcttctTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCg                                                 >  2:562482/1‑93 (MQ=255)
                                            cttcttTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGt                                                <  1:1250294/93‑1 (MQ=255)
                                              tcttTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCTCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTa                                              <  2:1190050/93‑1 (MQ=255)
                                              tcttTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTa                                              >  2:7188515/1‑93 (MQ=255)
                                               cttTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTaa                                             <  2:6801195/93‑1 (MQ=255)
                                               cttTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTaa                                             <  2:1561875/93‑1 (MQ=255)
                                                 ttCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGc                                           >  1:800042/1‑93 (MQ=255)
                                                   cAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCAc                                         <  1:5808659/93‑1 (MQ=255)
                                                   cAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCAc                                         <  2:2766761/93‑1 (MQ=255)
                                                    aGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGAGATTTATCAATTTTTCGTTAAGCACt                                        >  2:883421/1‑93 (MQ=255)
                                                     gCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCTCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTg                                       >  1:7421132/1‑93 (MQ=255)
                                                     gCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTg                                       >  2:365395/1‑93 (MQ=255)
                                                       aaaGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGca                                     <  1:3770498/93‑1 (MQ=255)
                                                        aaGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGcac                                    <  2:6217211/93‑1 (MQ=255)
                                                         aGCCTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGcacc                                   <  2:405195/93‑1 (MQ=255)
                                                           ccTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGcaccac                                 <  1:2726590/93‑1 (MQ=255)
                                                           ccTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGcaccac                                 <  1:6976226/93‑1 (MQ=255)
                                                           ccTGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGcaccac                                 <  2:472660/93‑1 (MQ=255)
                                                            cTGACTGGATACACCAGCCACAGGGGAATGCTCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACt                                >  2:3752088/1‑93 (MQ=255)
                                                            cTGACTGGATACACCAGCCACAGGGGAATGCTCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACt                                >  2:1294289/1‑93 (MQ=255)
                                                             tGACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTa                               >  1:5291559/1‑93 (MQ=255)
                                                              gACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTAt                              <  2:6533806/93‑1 (MQ=255)
                                                              gACTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTAt                              >  1:6228640/1‑93 (MQ=255)
                                                               aCTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTAtt                             <  1:1523304/93‑1 (MQ=255)
                                                               aCTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGGGATTTATCAATTTTTCGTTAAGCACTGCACCACTAtt                             >  1:3648913/1‑93 (MQ=255)
                                                                cTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTAttt                            >  1:4222752/1‑93 (MQ=255)
                                                                cTGGATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTAttt                            <  1:1763288/93‑1 (MQ=255)
                                                                  ggATACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTc                          <  2:2712578/93‑1 (MQ=255)
                                                                    aTACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCAt                        >  2:2859780/1‑93 (MQ=255)
                                                                     tACACCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATg                       >  2:1337248/1‑93 (MQ=255)
                                                                      acacCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGa                      <  1:927007/93‑1 (MQ=255)
                                                                       cacCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGaa                     <  2:6296791/93‑1 (MQ=255)
                                                                        acCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGAag                    >  1:4528606/1‑93 (MQ=255)
                                                                        acCAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGAag                    >  1:3836701/1‑93 (MQ=255)
                                                                         ccAGCCACAGGGGAATGCTCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGAaga                   <  2:4449337/93‑1 (MQ=255)
                                                                         ccAGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGAaga                   <  1:866628/93‑1 (MQ=255)
                                                                           aGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGAagata                 <  2:5351750/93‑1 (MQ=255)
                                                                           aGCCACAGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGAagata                 <  2:178963/93‑1 (MQ=255)
                                                                              cacaGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGAagatagat              >  1:3518886/1‑93 (MQ=255)
                                                                               acaGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGAAgatagata             <  1:2446833/93‑1 (MQ=255)
                                                                               acaGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGAAgatagata             >  2:5782514/1‑93 (MQ=255)
                                                                                caGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGAAGATAGATaa            >  1:3128010/1‑93 (MQ=255)
                                                                                caGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGAAGATAGATaa            >  1:1022393/1‑93 (MQ=255)
                                                                                caGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGAAGATAGATaa            <  1:6414699/93‑1 (MQ=255)
                                                                                 aGGGGAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGAAGATAGATAAc           <  2:4871277/93‑1 (MQ=255)
                                                                                  ggggAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGAAGATAGATAACg          >  1:4976000/1‑93 (MQ=255)
                                                                                   gggAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGAAGATAGATAACGa         >  2:4572630/1‑93 (MQ=255)
                                                                                     gAATGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGAAGATAGATAACGAtc       >  2:3915149/1‑93 (MQ=255)
                                                                                      aaTGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGAAGATAGATAACGAtct      >  1:3166589/1‑93 (MQ=255)
                                                                                       aTGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGAAGATAGATAACGAtctc     <  2:5677305/93‑1 (MQ=255)
                                                                                       aTGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGAAGATAGATAACGAtctc     >  1:7249083/1‑93 (MQ=255)
                                                                                        tGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGAAGATAGATAACGATCTcc    <  1:5411661/93‑1 (MQ=255)
                                                                                        tGCCCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGAAGATAGATAACGATCTcc    <  1:6000798/93‑1 (MQ=255)
                                                                                          cTCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGAAGATAGATAACGATCTCCgg  <  2:7089067/93‑1 (MQ=255)
                                                                                           |                                                                                           
AACGCTTTGCCCCGGGCAATCTTGAGTTCCTACCAGAAAAAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCTCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGAAGATAGATAACGATCTCCGG  >  NC_000913/2059419‑2059601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: