Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,238,220 T→C W213R (TGG→CGG)  ygjU → putative transport protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,238,2200TC87.4% 678.1 / 79.8 270W213R (TGG→CGG) ygjUputative transport protein
Reads supporting (aligned to +/- strand):  ref base T (15/19);  new base C (120/116);  total (135/135)
Fisher's exact test for biased strand distribution p-value = 5.83e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 274 total aligned reads displayed.

CTTTATGGTGAAACTGGTCATTCGCTTCGCACCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGTGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCATTGCTGGTGTGGTGGAAAATTCGT  >  NC_000913/3238129‑3238312
                                                                                           |                                                                                            
 tttATGGTGAAACTGGTCATTCGCTTCGCACCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCgg                                                                                            >  1:3958209/1‑93 (MQ=255)
  ttATGGTGAAACTGGTCATTCGCTTCGCACCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCggg                                                                                           >  1:4986019/1‑93 (MQ=255)
   tATGGTGAAACTGGTCATTCGCTTCGCACCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCgggg                                                                                          <  1:6929365/93‑1 (MQ=255)
      ggTGAAACTGGTCATTCGCTTCGCACCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTa                                                                                       >  2:7286549/1‑93 (MQ=255)
        tGAACCTGTTCATTCGCTTCGCCCCGATTGGTATTTTTGGGTTGGTTTCTTTTCCCCGGGCAACCCCCGGTTTCTCCACACTGCGGGGCTAcg                                                                                     <  1:6182285/93‑1 (MQ=255)
        tGAAACTGGTCATTCGCTTCGCACCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTAcg                                                                                     <  2:5903484/93‑1 (MQ=255)
           aaCTGGTCATTCGCTTCGCACCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACgcgc                                                                                  <  1:3738221/93‑1 (MQ=255)
           aaCTGGTCATTCGCTTCGCACCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACgcgc                                                                                  >  1:1172684/1‑93 (MQ=255)
             cTGGTCATTCGCTTCGCACCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCaa                                                                                >  2:5677417/1‑93 (MQ=255)
              tGGTCATTCGCTTCGCACCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGTGGGGCTACGCGCAAc                                                                               <  1:4377326/93‑1 (MQ=255)
               ggTCATTCGCTTCGCACCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAAct                                                                              >  2:2544337/1‑93 (MQ=255)
               ggTCATTCGCTTCGCACCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAAct                                                                              >  2:4852947/1‑93 (MQ=255)
                gTCATTCGCTTCGCACCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAActg                                                                             >  2:1354825/1‑93 (MQ=255)
                 tCATTCGCTTCGCACCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAActgc                                                                            <  2:3136631/93‑1 (MQ=255)
                 tCATTCGCTTCGCACCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAActgc                                                                            <  1:1798833/93‑1 (MQ=255)
                    ttcgcttcgcACCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGTGGGGCTACGCGCAACTGCTgg                                                                         >  1:5811819/1‑93 (MQ=255)
                    ttcgcttcgcACCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTgg                                                                         <  2:3253511/93‑1 (MQ=255)
                    ttcgcttcgcACCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTgg                                                                         <  1:4314086/93‑1 (MQ=255)
                    ttcgcttcgcACCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTgg                                                                         >  1:1035355/1‑93 (MQ=255)
                     tcgcttcgcACCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGt                                                                        <  1:6586086/93‑1 (MQ=255)
                     tcgcttcgcACCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGt                                                                        >  1:1111867/1‑93 (MQ=255)
                     tcgcttcgcACCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGt                                                                        >  2:5779321/1‑93 (MQ=255)
                      cgcttcgcACCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGTGGGGCTACGCGCAACTGCTGGTc                                                                       >  2:2228322/1‑93 (MQ=255)
                       gcttcgcACCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCg                                                                      >  1:5229864/1‑93 (MQ=255)
                       gcttcgcACCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCg                                                                      >  1:5732824/1‑93 (MQ=255)
                        cttcgcACCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGt                                                                     >  2:5961210/1‑93 (MQ=255)
                        cttcgcACCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGt                                                                     >  1:2499103/1‑93 (MQ=255)
                          tcgcACCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGc                                                                   <  2:5370326/93‑1 (MQ=255)
                            gcACCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTg                                                                 >  1:6774589/1‑93 (MQ=255)
                              aCCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGt                                                               >  1:4281852/1‑93 (MQ=255)
                              aCCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGt                                                               <  1:2841094/93‑1 (MQ=255)
                              aCCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGt                                                               <  2:2446383/93‑1 (MQ=255)
                                cGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTg                                                             >  2:6159488/1‑93 (MQ=255)
                                cGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTg                                                             >  2:1152583/1‑93 (MQ=255)
                                 gATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTgg                                                            >  1:5970561/1‑93 (MQ=255)
                                  aTTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGc                                                           <  2:3666046/93‑1 (MQ=255)
                                  aTTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGc                                                           >  1:6006941/1‑93 (MQ=255)
                                    tGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTg                                                         >  2:1573332/1‑93 (MQ=255)
                                      gTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGTGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTa                                                       <  1:4742436/93‑1 (MQ=255)
                                      gTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTa                                                       <  1:626253/93‑1 (MQ=255)
                                      gTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTa                                                       >  1:3930187/1‑93 (MQ=255)
                                       tATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGTGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTAt                                                      >  1:968650/1‑93 (MQ=255)
                                       tATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTAt                                                      <  1:1924354/93‑1 (MQ=255)
                                       tATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTAt                                                      <  1:7211590/93‑1 (MQ=255)
                                         tttttGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGt                                                    <  2:4580917/93‑1 (MQ=255)
                                         tttttGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGt                                                    <  1:1332650/93‑1 (MQ=255)
                                         tttttGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGt                                                    <  1:7380810/93‑1 (MQ=255)
                                          ttttGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGTGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGtt                                                   <  1:6058543/93‑1 (MQ=255)
                                           tttGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTa                                                  <  1:3079687/93‑1 (MQ=255)
                                             tGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACt                                                >  2:1754342/1‑93 (MQ=255)
                                                gCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACtggt                                             <  1:7503247/93‑1 (MQ=255)
                                                 cTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACtggtg                                            <  2:2934233/93‑1 (MQ=255)
                                                 cTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACtggtg                                            >  1:4170569/1‑93 (MQ=255)
                                                  tGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACtggtgg                                           <  2:7202871/93‑1 (MQ=255)
                                                      ttcttcTACCCTGGCAACCACCGGTTTCTCCACACTGTGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCt                                       >  2:4182476/1‑93 (MQ=255)
                                                      ttcttcTACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCt                                       >  2:4337545/1‑93 (MQ=255)
                                                         ttctACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCtggt                                    >  2:3068778/1‑93 (MQ=255)
                                                          tctACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCtggtg                                   >  1:6725593/1‑93 (MQ=255)
                                                          tctACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCtggtg                                   >  2:4743789/1‑93 (MQ=255)
                                                            tACCCTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTggtggt                                 <  1:3416273/93‑1 (MQ=255)
                                                             aCCCTGGCAACCACCGGTTTCTCCACACTGTGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGtt                                <  1:2681712/93‑1 (MQ=255)
                                                               ccTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTaa                              >  2:7399594/1‑93 (MQ=255)
                                                               ccTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTaa                              >  2:3893327/1‑93 (MQ=255)
                                                                cTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAAc                             >  2:2011680/1‑93 (MQ=255)
                                                                cTGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAAc                             >  1:1370428/1‑93 (MQ=255)
                                                                 tGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAAcc                            <  2:6947868/93‑1 (MQ=255)
                                                                 tGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAAcc                            >  1:5611784/1‑93 (MQ=255)
                                                                 tGGCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAAcc                            <  2:3773929/93‑1 (MQ=255)
                                                                  ggCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAAccc                           >  2:4722066/1‑93 (MQ=255)
                                                                   gCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCa                          >  2:7497968/1‑93 (MQ=255)
                                                                   gCAACCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCa                          <  2:143211/93‑1 (MQ=255)
                                                                     aaCCACCGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCAtt                        <  2:4009618/93‑1 (MQ=255)
                                                                      accaccGGTTTCTCGACACTGTGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCATTg                       >  2:6444764/1‑93 (MQ=255)
                                                                       ccaccGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCATTGc                      <  2:3391102/93‑1 (MQ=255)
                                                                       ccaccGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCATTGc                      >  1:3840341/1‑93 (MQ=255)
                                                                       ccaccGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCATTGc                      >  2:5098540/1‑93 (MQ=255)
                                                                        caccGGTTTCTCCACACTGTGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCATTGCt                     <  2:6622681/93‑1 (MQ=255)
                                                                        caccGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCATTGCt                     >  1:1875841/1‑93 (MQ=255)
                                                                        caccGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCATTGCt                     >  1:4056867/1‑93 (MQ=255)
                                                                         accGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCATTGCtg                    <  1:810258/93‑1 (MQ=255)
                                                                         accGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCATTGCtg                    >  1:6414120/1‑93 (MQ=255)
                                                                          ccGGTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCATTGCtgg                   <  1:4625744/93‑1 (MQ=255)
                                                                            ggTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCATTGCtggtg                 >  2:6365246/1‑93 (MQ=255)
                                                                             gTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCATTGCtggtgt                <  2:183773/93‑1 (MQ=255)
                                                                             gTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCATTGCtggtgt                >  2:2705930/1‑93 (MQ=255)
                                                                             gTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCATTGCtggtgt                >  1:3682016/1‑93 (MQ=255)
                                                                             gTTTCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCATTGCtggtgt                >  2:5042779/1‑93 (MQ=255)
                                                                              tttCTCCACACTGCGGGGGTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCATTGCtggtgtg               <  1:1482232/93‑1 (MQ=255)
                                                                              tttCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCATTGCtggtgtg               >  2:4462671/1‑93 (MQ=255)
                                                                               ttCTCCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCATTGCtggtgtgg              <  1:4434694/93‑1 (MQ=255)
                                                                                tctcCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCATTGCtggtgtggt             >  1:5469853/1‑93 (MQ=255)
                                                                                  tcCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCATTGCTGGTGtggtgg           >  1:2294159/1‑93 (MQ=255)
                                                                                  tcCACACTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCATTGCTGGTGtggtgg           >  1:4762996/1‑93 (MQ=255)
                                                                                    cacaCTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCATTGCTGGTGTGGTGGaa         >  2:6237310/1‑93 (MQ=255)
                                                                                     acacTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCATTGCTGGTGTGGTGGaaa        >  2:5120608/1‑93 (MQ=255)
                                                                                       acTGTGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCATTGCTGGTGTGGTGGAAAAt      <  2:4172413/93‑1 (MQ=255)
                                                                                       acTGTGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCATTGCTGGTGTGGTGGAAAAt      <  1:254251/93‑1 (MQ=255)
                                                                                       acTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCATTGCTGGTGTGGTGGAAAAt      <  1:2082074/93‑1 (MQ=255)
                                                                                       acTGCGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCATTGCTGGTGTGGTGGAAAAt      <  2:5179484/93‑1 (MQ=255)
                                                                                           tgGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCATTGCTGGTGTGGTGGAAAATtcgt  <  1:2980206/93‑1 (MQ=255)
                                                                                           |                                                                                            
CTTTATGGTGAAACTGGTCATTCGCTTCGCACCGATTGGTATTTTTGGGCTGGTTTCTTCTACCCTGGCAACCACCGGTTTCTCCACACTGTGGGGCTACGCGCAACTGCTGGTCGTGCTGGTTGGCTGTATGTTACTGGTGGCGCTGGTGGTTAACCCATTGCTGGTGTGGTGGAAAATTCGT  >  NC_000913/3238129‑3238312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: