BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	355,588	T→C	L65P (CTG→CCG)	codA →	cytosine deaminase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	355,588	0	T	C	79.3%	473.5 / 139.8	251	L65P (CTG→CCG)	codA	cytosine deaminase
Reads supporting (aligned to +/- strand): ref base T (27/25); new base C (110/89); total (137/114)
Fisher's exact test for biased strand distribution p-value = 7.55e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.14e-01

Only 100 of 253 total aligned reads displayed.

TGCGCAATCCGGCGTGATGCCCATAACTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCTGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGAACGCTGGGCCGAGCGCAAAGCGTTA  >  NC_000913/355496‑355679

tGCGCAATCCGGCGTGATGCCCATAACTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCt                                                                                             <  2:5578589/93‑1 (MQ=255)

   gcAATCCGGCGTGATGCCCATAACTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCTGGa                                                                                          >  1:6769368/1‑93 (MQ=255)

   gcAATCCGGCGTGATGCCCATAACTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGa                                                                                          <  1:1897556/93‑1 (MQ=255)

     aaTCCGGCGTGATGCCCATAACTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCTGGaca                                                                                        <  2:230407/93‑1 (MQ=255)

     aaTCCGGCGTGATGCCCATAACTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGaca                                                                                        >  1:4746541/1‑93 (MQ=255)

       tCCGGCGTGATGCCCATAACTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGAcacc                                                                                      >  2:6209216/1‑93 (MQ=255)

        ccGGCGTGATGCCCATAACTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGAcacca                                                                                     <  1:1311634/93‑1 (MQ=255)

         cGGCGTGATGCCCATAACTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGAcaccac                                                                                    <  1:1175407/93‑1 (MQ=255)

         cGGCGTGATGCCCATAACTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGAcaccac                                                                                    <  1:6323450/93‑1 (MQ=255)

          ggCGTGATGCCCATAACTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCTGGACACCACg                                                                                   >  2:5058662/1‑93 (MQ=255)

          ggCGTGATGCCCATAACTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACg                                                                                   >  1:2720808/1‑93 (MQ=255)

           gCGTGATGCCCATAACTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGc                                                                                  >  1:1758000/1‑93 (MQ=255)

           gCGTGATGCCCATAACTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGc                                                                                  >  2:4581322/1‑93 (MQ=255)

             gTGATGCCCATAACTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCaa                                                                                >  2:1605836/1‑93 (MQ=255)

             gTGATGCCCATAACTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCaa                                                                                >  1:2034567/1‑93 (MQ=255)

              tGATGCCCATAACTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCaaa                                                                               <  2:4916596/93‑1 (MQ=255)

                 tGCCCATAACTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCTGGACACCACGCAAAccg                                                                            >  2:4160266/1‑93 (MQ=255)

                   cccATAACTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAAccgcc                                                                          <  2:2089353/93‑1 (MQ=255)

                      aTAACTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGa                                                                       >  2:5583857/1‑93 (MQ=255)

                      aTAACTGAAAACAGCCTGGATGCCAAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGa                                                                       >  2:7363855/1‑93 (MQ=255)

                       tAACTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCTGGACACCACGCAAACCGCCGGAc                                                                      <  1:3860806/93‑1 (MQ=255)

                       tAACTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAAc                                                                              >  1:4098470/1‑85 (MQ=255)

                       tAACTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAAc                                                                              <  2:4098470/85‑1 (MQ=255)

                       tAACTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGAc                                                                      >  2:1913781/1‑93 (MQ=255)

                       tAACTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGAc                                                                      >  1:3641013/1‑93 (MQ=255)

                       tAACTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGAc                                                                      >  1:4209473/1‑93 (MQ=255)

                         aCTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACaa                                                                    >  2:4211552/1‑93 (MQ=255)

                         aCTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACaa                                                                    <  2:5914964/93‑1 (MQ=255)

                         aCTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACaa                                                                    >  2:6777973/1‑93 (MQ=255)

                         aCTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACaa                                                                    >  2:5321887/1‑93 (MQ=255)

                          cTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAAc                                                                   >  2:757939/1‑93 (MQ=255)

                           tGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCTGGACACCACGCAAACCGCCGGACAAcc                                                                  <  1:3223503/93‑1 (MQ=255)

                            gAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCg                                                                 >  1:5788842/1‑93 (MQ=255)

                              aaaCAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGaa                                                               <  1:984613/93‑1 (MQ=255)

                               aaCAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCTGGACACCACGCAAACCGCCGGACAACCGAAc                                                              <  2:6624724/93‑1 (MQ=255)

                               aaCAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAAc                                                              <  1:5174736/93‑1 (MQ=255)

                               aaCAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAAc                                                              <  1:5571975/93‑1 (MQ=255)

                                 cAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTg                                                            >  2:1784843/1‑93 (MQ=255)

                                  aGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCTGGACACCACGCAAACCGCCGGACAACCGAACTgg                                                           <  2:714458/93‑1 (MQ=255)

                                     cTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAAt                                                        <  2:2566569/93‑1 (MQ=255)

                                          tGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTc                                                   >  1:5866941/1‑93 (MQ=255)

                                          tGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTc                                                   >  1:4181777/1‑93 (MQ=255)

                                           gCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCTGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTcc                                                  <  1:3490694/93‑1 (MQ=255)

                                            ccGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCg                                                 >  1:6164889/1‑93 (MQ=255)

                                            ccGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCg                                                 >  2:1438814/1‑93 (MQ=255)

                                             cGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCgg                                                >  1:489092/1‑93 (MQ=255)

                                              gAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGc                                               >  1:3554963/1‑93 (MQ=255)

                                               aaCAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCa                                              >  1:7327013/1‑93 (MQ=255)

                                                  aaGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGc                                           >  1:4031228/1‑93 (MQ=255)

                                                   aGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCTGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCt                                          >  1:2538897/1‑93 (MQ=255)

                                                   aGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCt                                          <  1:6089375/93‑1 (MQ=255)

                                                    ggTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTg                                         <  2:3376579/93‑1 (MQ=255)

                                                     gTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGt                                        >  2:3291786/1‑93 (MQ=255)

                                                      tttAGTTATACCGCCGTTTGTGGAGCCACATATTCACCTGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGtt                                       >  2:5954857/1‑93 (MQ=255)

                                                       ttAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGttt                                      >  1:315929/1‑93 (MQ=255)

                                                       ttAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGttt                                      >  2:6591840/1‑93 (MQ=255)

                                                        tAGTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTg                                     >  1:4125462/1‑93 (MQ=255)

                                                          gTTATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGaa                                   <  2:855710/93‑1 (MQ=255)

                                                           ttATACCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAg                                  <  2:4388290/93‑1 (MQ=255)

                                                             ataCCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGc                                >  1:6482750/1‑93 (MQ=255)

                                                             ataCCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGc                                <  2:3927285/93‑1 (MQ=255)

                                                              taCCGCCGTTTGTGGAGCCACATATTCACCTGGACACCACGCCAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCa                               <  1:7374780/93‑1 (MQ=255)

                                                              taCCGCCGTTTGTGGAGCCACATATTCACCTGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCa                               >  2:3152976/1‑93 (MQ=255)

                                                               aCCGCCGTTTGTGGAGCCACATATTCACCTGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCAt                              <  1:2661964/93‑1 (MQ=255)

                                                               aCCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCAt                              <  2:2461336/93‑1 (MQ=255)

                                                               aCCGCCGTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCAt                              <  1:5434934/93‑1 (MQ=255)

                                                                ccgccgTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCAtt                             >  1:1417258/1‑93 (MQ=255)

                                                                  gccgTTTGTGGAGCCACATATTCACCTGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGa                           <  2:1703685/93‑1 (MQ=255)

                                                                  gccgTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGa                           >  1:2296956/1‑93 (MQ=255)

                                                                  gccgTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGa                           >  1:2125164/1‑93 (MQ=255)

                                                                  gccgTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGa                           <  1:4463979/93‑1 (MQ=255)

                                                                   ccgTTTGTGGAGCCACATATTCTCCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGaa                          <  1:4669952/93‑1 (MQ=255)

                                                                   ccgTTTGTGGAGCCACATATTCACCTGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGaa                          <  1:5032975/93‑1 (MQ=255)

                                                                   ccgTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGaa                          <  2:3413979/93‑1 (MQ=255)

                                                                   ccgTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGaa                          <  1:7060086/93‑1 (MQ=255)

                                                                   ccgTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGaa                          <  1:218283/93‑1 (MQ=255)

                                                                    cgTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGAAc                         <  1:2840238/93‑1 (MQ=255)

                                                                     gTTTGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGAACg                        >  2:2980801/1‑93 (MQ=255)

                                                                      tttGTGGAGCCACATATTCACCTGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGAACGc                       >  2:5177952/1‑93 (MQ=255)

                                                                      tttGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGAACGc                       <  1:363555/93‑1 (MQ=255)

                                                                       ttGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGAACGCt                      <  2:4318435/93‑1 (MQ=255)

                                                                       ttGTGGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGAACGCt                      <  2:881521/93‑1 (MQ=255)

                                                                         gtgGAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGAACGCTgg                    <  2:6556139/93‑1 (MQ=255)

                                                                           ggAGCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGAACGCTGGGc                  <  1:6953074/93‑1 (MQ=255)

                                                                            gAGCCACATATTCACCTGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGAACGCTGGGcc                 >  2:2762926/1‑93 (MQ=255)

                                                                              gCCACATATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGAACGCTGGGCCGa               >  2:7053011/1‑93 (MQ=255)

                                                                                cacaTATTCACCTGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGAACGCTGGGCCGAgc             <  1:1474052/93‑1 (MQ=255)

                                                                                cacaTATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGAACGCTGGGCCGAgc             >  2:7106430/1‑93 (MQ=255)

                                                                                 acaTATTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGAACGCTGGGCCGAgcg            >  2:5846928/1‑93 (MQ=255)

                                                                                  caTATTCACCTGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGAACGCTGGGCCGAgcgc           >  2:3651150/1‑93 (MQ=255)

                                                                                    tatTCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGAACGCTGGGCCGAGCGCaa         <  1:6650610/93‑1 (MQ=255)

                                                                                      ttCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGAACGCTGGGCCGAGCGCAAAg       >  1:4363511/1‑93 (MQ=255)

                                                                                      ttCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGAACGCTGGGCCGAGCGCAAAg       >  2:944250/1‑93 (MQ=255)

                                                                                      ttCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGAACGCTGGGCCGAGCGCAAAg       >  2:481478/1‑93 (MQ=255)

                                                                                       tCACCTGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGAACGCTGGGCCGAGCGCAAAGc      <  2:517658/93‑1 (MQ=255)

                                                                                       tCACCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGAACGCTGGGCCGAGCGCAACGc      <  2:4737113/93‑1 (MQ=255)

                                                                                         aCCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGAACGCTGGGCCGAGCGCAAAGCGt    <  2:2284158/93‑1 (MQ=255)

                                                                                         aCCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGAACGCTGGGCCGAGCGCAAAGCGt    <  1:3095609/93‑1 (MQ=255)

                                                                                         aCCCGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGAACGCTGGGCCGAGCGCAAAGCGt    <  2:3675705/93‑1 (MQ=255)

                                                                                           cNGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGAACGCTGGGCCGAGCGCAAAGCGttn  <  2:5541300/93‑2 (MQ=255)

TGCGCAATCCGGCGTGATGCCCATAACTGAAAACAGCCTGGATGCCGAACAAGGTTTAGTTATACCGCCGTTTGTGGAGCCACATATTCACCTGGACACCACGCAAACCGCCGGACAACCGAACTGGAATCAGTCCGGCACGCTGTTTGAAGGCATTGAACGCTGGGCCGAGCGCAAAGCGTTA  >  NC_000913/355496‑355679

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`