Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,483,905 T→C V50A (GTG→GCG)  crp → cyclic AMP receptor protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,483,9050TC82.2% 644.3 / 140.9 304V50A (GTG→GCG) crpcyclic AMP receptor protein
Reads supporting (aligned to +/- strand):  ref base T (18/36);  new base C (103/147);  total (121/183)
Fisher's exact test for biased strand distribution p-value = 3.58e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.83e-01

Only 100 of 307 total aligned reads displayed.

ACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGCC  >  NC_000913/3483815‑3483997
                                                                                           |                                                                                            
 caTTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCt                                                                                           >  2:6547739/1‑93 (MQ=255)
  aTTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTg                                                                                          <  2:4989834/93‑1 (MQ=255)
   ttCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGa                                                                                         <  2:1239056/93‑1 (MQ=255)
   ttCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGa                                                                                         <  1:386435/93‑1 (MQ=255)
   ttCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGa                                                                                         <  2:4024169/93‑1 (MQ=255)
       tAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCaa                                                                                     >  1:1744871/1‑93 (MQ=255)
       tAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCaa                                                                                     <  2:7122452/93‑1 (MQ=255)
        aaGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCaaa                                                                                    <  2:5462639/93‑1 (MQ=255)
          gTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGa                                                                                  >  1:7453812/1‑93 (MQ=255)
           tACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGAc                                                                                 <  1:6368549/93‑1 (MQ=255)
           tACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGAc                                                                                 >  2:5739406/1‑93 (MQ=255)
             cccATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGa                                                                               >  1:3263377/1‑93 (MQ=255)
             cccATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGa                                                                               >  2:3173654/1‑93 (MQ=255)
              ccATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGaa                                                                              <  1:6797191/93‑1 (MQ=255)
              ccATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGaa                                                                              <  2:1124025/93‑1 (MQ=255)
                aTCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAaga                                                                            <  1:4340949/93‑1 (MQ=255)
                aTCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAaga                                                                            <  2:260001/93‑1 (MQ=255)
                 tCCAAGAGCACGCTTATTTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCCCTGATCAAAGACGAaga                                                                            <  1:2373694/93‑1 (MQ=255)
                 tCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAagag                                                                           <  2:1693193/93‑1 (MQ=255)
                 tCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAagag                                                                           >  2:6066332/1‑93 (MQ=255)
                  ccAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAAGAgg                                                                          >  1:2488902/1‑93 (MQ=255)
                  ccAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAgg                                                                          <  2:6775608/93‑1 (MQ=255)
                   cAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAggg                                                                         >  2:6981239/1‑93 (MQ=255)
                   cAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAggg                                                                         >  1:5886274/1‑93 (MQ=255)
                     agagCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAAGAGGGTa                                                                       >  2:1879872/1‑93 (MQ=255)
                      gagCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTaa                                                                      <  1:304835/93‑1 (MQ=255)
                      gagCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGGaa                                                                      >  1:1288923/1‑93 (MQ=255)
                       agCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTaaa                                                                     <  2:6398150/93‑1 (MQ=255)
                        gCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAg                                                                    <  2:3793665/93‑1 (MQ=255)
                         cACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAAGAGGGTAAAGa                                                                   <  1:692484/93‑1 (MQ=255)
                          aCGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAAGAGGGTAAAGaa                                                                  >  1:6649748/1‑93 (MQ=255)
                          aCGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGaa                                                                  >  1:5556741/1‑93 (MQ=255)
                           cGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGaaa                                                                 <  2:2407154/93‑1 (MQ=255)
                           cGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGaaa                                                                 <  2:5308048/93‑1 (MQ=255)
                            gCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAAt                                                                >  1:5478532/1‑93 (MQ=255)
                             cTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATg                                                               >  1:2747298/1‑93 (MQ=255)
                             cTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATg                                                               >  1:123855/1‑93 (MQ=255)
                              ttATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGa                                                              <  2:4902157/93‑1 (MQ=255)
                                aTTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATc                                                            >  2:1504445/1‑93 (MQ=255)
                                  ttCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATcc                                                           >  2:1000017/1‑93 (MQ=255)
                                  ttCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATcc                                                           <  2:3546817/93‑1 (MQ=255)
                                   tCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCct                                                          <  1:2978949/93‑1 (MQ=255)
                                   tCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCct                                                          >  2:4161575/1‑93 (MQ=255)
                                    cACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCctc                                                         <  1:1050184/93‑1 (MQ=255)
                                    cACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCctc                                                         >  2:4495162/1‑93 (MQ=255)
                                       cAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTcc                                                      <  2:4592687/93‑1 (MQ=255)
                                        aGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCt                                                     >  1:2046188/1‑93 (MQ=255)
                                        aGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCt                                                     <  1:1623718/93‑1 (MQ=255)
                                         gggTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTa                                                    <  1:2233320/93‑1 (MQ=255)
                                         gggTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTa                                                    >  1:1386278/1‑93 (MQ=255)
                                           gTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATc                                                  <  2:3739626/93‑1 (MQ=255)
                                           gTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATc                                                  <  1:5680949/93‑1 (MQ=255)
                                            tGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCt                                                 <  1:5738416/93‑1 (MQ=255)
                                            tGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCt                                                 >  1:3533320/1‑93 (MQ=255)
                                             gAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTg                                                <  2:3374713/93‑1 (MQ=255)
                                              aaaaaGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGa                                               <  2:4356591/93‑1 (MQ=255)
                                                  aGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCa                                           <  2:1371117/93‑1 (MQ=255)
                                                   gCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAg                                          <  2:7389269/93‑1 (MQ=255)
                                                     ggAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAggg                                        <  2:267085/93‑1 (MQ=255)
                                                      gAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGt                                       >  2:3810077/1‑93 (MQ=255)
                                                      gAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGt                                       >  2:47939/1‑93 (MQ=255)
                                                      gAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGt                                       <  2:2224812/93‑1 (MQ=255)
                                                        aaCGCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGa                                     <  1:3850049/93‑1 (MQ=255)
                                                           gCTGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGAttt                                  >  1:689391/1‑93 (MQ=255)
                                                             tGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTa                                >  2:1072639/1‑93 (MQ=255)
                                                             tGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTa                                <  2:2025540/93‑1 (MQ=255)
                                                             tGTACTACATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTa                                <  1:7263752/93‑1 (MQ=255)
                                                              gTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTAt                               >  1:3440926/1‑93 (MQ=255)
                                                               tactacATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTAtt                              <  1:3303577/93‑1 (MQ=255)
                                                               tactacATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTAtt                              >  1:7100842/1‑93 (MQ=255)
                                                                 ctacATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTgg                            <  1:457018/93‑1 (MQ=255)
                                                                  tacATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGc                           <  2:2947434/93‑1 (MQ=255)
                                                                  tacATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGc                           >  1:4073233/1‑93 (MQ=255)
                                                                   acATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCg                          >  2:4816296/1‑93 (MQ=255)
                                                                   acATCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCg                          <  1:1077618/93‑1 (MQ=255)
                                                                     aTCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGaa                        <  2:3273405/93‑1 (MQ=255)
                                                                     aTCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGaa                        >  1:529240/1‑93 (MQ=255)
                                                                      tCGTTATAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAAc                       >  2:6650548/1‑93 (MQ=255)
                                                                      tCGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAAc                       >  2:4427937/1‑93 (MQ=255)
                                                                       cGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACt                      <  2:5630415/93‑1 (MQ=255)
                                                                       cGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACt                      <  1:79284/93‑1 (MQ=255)
                                                                       cGTTAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACt                      <  1:4837900/93‑1 (MQ=255)
                                                                         ttAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTgg                    >  1:5086048/1‑93 (MQ=255)
                                                                         ttAAAGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTgg                    <  1:3350742/93‑1 (MQ=255)
                                                                            aaGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGcc                 >  1:3753022/1‑93 (MQ=255)
                                                                            aaGGCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGcc                 >  1:621964/1‑93 (MQ=255)
                                                                              ggCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTg               >  2:4668521/1‑93 (MQ=255)
                                                                               gCTCTGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGt              >  1:6613959/1‑93 (MQ=255)
                                                                                 tctGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGttt            <  2:1940945/93‑1 (MQ=255)
                                                                                 tctGTGGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGttt            >  2:6356277/1‑93 (MQ=255)
                                                                                   tgtgGCAGCACTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGa          <  1:4179859/93‑1 (MQ=255)
                                                                                    gtgGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGaa         <  1:5152925/93‑1 (MQ=255)
                                                                                    gtgGCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGaa         <  1:2832760/93‑1 (MQ=255)
                                                                                     tgGCAGTGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAag        <  1:2639701/93‑1 (MQ=255)
                                                                                      ggCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAaga       <  1:7350681/93‑1 (MQ=255)
                                                                                      ggCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAaga       <  1:4265301/93‑1 (MQ=255)
                                                                                      ggCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAaga       <  1:1486726/93‑1 (MQ=255)
                                                                                       gCAGCGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAagag      <  2:2275707/93‑1 (MQ=255)
                                                                                          gTGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGc   <  2:3393083/93‑1 (MQ=255)
                                                                                           tGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCCGTTTGAAGAGGGcc  <  2:7485290/93‑1 (MQ=255)
                                                                                           |                                                                                            
ACATTCATAAGTACCCATCCAAGAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAGACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGCC  >  NC_000913/3483815‑3483997

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: