BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,609,245	T→C	L54L (TTA→TTG)	yhhS ←	putative transport

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,609,245	0	T	C	84.1%	698.3 / 111.2	303	L54L (TTA→TTG)	yhhS	putative transport
Reads supporting (aligned to +/- strand): ref base T (26/22); new base C (120/134); total (146/157)
Fisher's exact test for biased strand distribution p-value = 4.32e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 304 total aligned reads displayed.

GCGGCTCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGTAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCAATCCGTTTAG  >  NC_000913/3609155‑3609337

gcggcTCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCaa                                                                                            <  2:4606864/93‑1 (MQ=255)

 cggcTCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGTAAt                                                                                           >  1:3138532/1‑93 (MQ=255)

  ggcTCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGTAATa                                                                                          <  1:3817807/93‑1 (MQ=255)

  ggcTCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGTAATa                                                                                          <  1:744409/93‑1 (MQ=255)

  ggcTCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGTAATa                                                                                          >  1:2257230/1‑93 (MQ=255)

  ggcTCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATa                                                                                          >  1:1359950/1‑93 (MQ=255)

  ggcTCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCAGCAATa                                                                                          >  1:4472114/1‑93 (MQ=255)

   gcTCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCAGCAATAc                                                                                         <  1:195342/93‑1 (MQ=255)

     tCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACag                                                                                       <  2:2313247/93‑1 (MQ=255)

     tCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACag                                                                                       >  1:958873/1‑93 (MQ=255)

     tCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACag                                                                                       <  1:1041152/93‑1 (MQ=255)

      cAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGTAATACagc                                                                                      >  1:1577685/1‑93 (MQ=255)

      cAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACagc                                                                                      <  2:2545008/93‑1 (MQ=255)

          aaGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACagcgagc                                                                                  >  1:1719784/1‑93 (MQ=255)

          aaGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACagcgagc                                                                                  <  2:1959552/93‑1 (MQ=255)

           aGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGTAATACagcgagcg                                                                                 <  1:436255/93‑1 (MQ=255)

           aGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACagcgagcg                                                                                 <  2:2757011/93‑1 (MQ=255)

            ngTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCng                                                                                >  2:5951273/2‑93 (MQ=255)

             gTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGc                                                                               <  2:1878101/93‑1 (MQ=255)

                gCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAAc                                                                            <  2:1927127/93‑1 (MQ=255)

                 cGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAAcc                                                                           <  2:1686197/93‑1 (MQ=255)

                  gAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGTAATACAGCGAGCGGCAAccc                                                                          <  2:87101/93‑1 (MQ=255)

                  gAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGTAATACAGCGAGCGGCAAccc                                                                          <  1:3978118/93‑1 (MQ=255)

                  gAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAAccc                                                                          >  1:83058/1‑93 (MQ=255)

                  gAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAAccc                                                                          <  2:1147255/93‑1 (MQ=255)

                  gAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCAGCAATACAGCGAGCGGCAAccc                                                                          >  2:4934347/1‑93 (MQ=255)

                    aaTATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGa                                                                        >  2:655011/1‑93 (MQ=255)

                     atatTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGAt                                                                       <  1:3688094/93‑1 (MQ=255)

                       atTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCAGCAATACAGCGAGCGGCAACCCGATgg                                                                     >  2:2955017/1‑93 (MQ=255)

                          gCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGa                                                                  >  2:80030/1‑93 (MQ=255)

                          gCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCAGCAATACAGCGAGCGGCAACCCGATGGTGa                                                                  >  1:2577782/1‑93 (MQ=255)

                            aGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAgg                                                                <  1:4118442/93‑1 (MQ=255)

                            aGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAgg                                                                >  2:1341319/1‑93 (MQ=255)

                            aGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAgg                                                                <  1:6072593/93‑1 (MQ=255)

                            aGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCAGCAATACAGCGAGCGGCAACCCGATGGTGAgg                                                                <  1:2063974/93‑1 (MQ=255)

                             ggCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCAGCAATACAGCGAGCGGCAACCCGATGGTGAGGt                                                               <  1:3028533/93‑1 (MQ=255)

                              gCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTa                                                              <  2:1481534/93‑1 (MQ=255)

                                tGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGTAATACAGCGAGCGGCAACCCGATGGTGAGGTAGc                                                            >  1:1074199/1‑93 (MQ=255)

                                tGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGc                                                            <  2:2839836/93‑1 (MQ=255)

                                tGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCAGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGc                                                            >  2:1310431/1‑93 (MQ=255)

                                 gATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCt                                                           >  2:2058236/1‑93 (MQ=255)

                                 gATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCAGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCt                                                           >  2:5767805/1‑93 (MQ=255)

                                  aNAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCAGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTg                                                          <  2:6662184/93‑1 (MQ=255)

                                    aaCCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGc                                                        <  2:3667377/93‑1 (MQ=255)

                                     aCCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCg                                                       >  2:5054839/1‑93 (MQ=255)

                                      ccAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGa                                                      <  2:7194502/93‑1 (MQ=255)

                                      ccAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCAGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGa                                                      >  2:3435133/1‑93 (MQ=255)

                                        aaTCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAg                                                    >  1:4802868/1‑93 (MQ=255)

                                        aaTCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCAGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAg                                                    <  1:1458129/93‑1 (MQ=255)

                                         aTCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGt                                                   <  1:6624658/93‑1 (MQ=255)

                                          tCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGtt                                                  <  2:1801099/93‑1 (MQ=255)

                                           ccTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCAGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTa                                                 <  2:220325/93‑1 (MQ=255)

                                             tGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGTAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTaaa                                               <  2:6879498/93‑1 (MQ=255)

                                             tGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTaaa                                               >  1:1231049/1‑93 (MQ=255)

                                             tGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTaaa                                               <  1:5813549/93‑1 (MQ=255)

                                               cccAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCAGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACa                                             >  2:14588/1‑93 (MQ=255)

                                               cccAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCAGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACa                                             <  1:7334127/93‑1 (MQ=255)

                                                ccAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGTAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACAt                                            <  2:3507211/93‑1 (MQ=255)

                                                ccAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACAt                                            >  1:5002566/1‑93 (MQ=255)

                                                ccAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACAt                                            <  1:6653818/93‑1 (MQ=255)

                                                ccAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACAt                                            <  1:5133873/93‑1 (MQ=255)

                                                ccAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACAt                                            <  1:3923356/93‑1 (MQ=255)

                                                 cAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATg                                           >  1:454591/1‑93 (MQ=255)

                                                  aGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGa                                          >  2:223961/1‑93 (MQ=255)

                                                   gAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGAc                                         <  1:7424721/93‑1 (MQ=255)

                                                      ggCGCTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACtat                                      <  1:4274171/93‑1 (MQ=255)

                                                      ggCGCTAAAGCCCATCACATCATGGACATAGCCCAGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACtat                                      <  2:4828069/93‑1 (MQ=255)

                                                       gcgcTAAAGCCCATCACATCATGGACATAGCCCAGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACtata                                     <  1:2999961/93‑1 (MQ=255)

                                                         gcTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATaga                                   >  2:775384/1‑93 (MQ=255)

                                                         gcTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATaga                                   <  2:3360429/93‑1 (MQ=255)

                                                         gcTAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATaga                                   <  2:5546362/93‑1 (MQ=255)

                                                           tAAAGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAgaga                                 >  2:3178811/1‑93 (MQ=255)

                                                            aaaGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGAc                                <  1:1187973/93‑1 (MQ=255)

                                                            aaaGCCCATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGAc                                <  1:3355899/93‑1 (MQ=255)

                                                              aGCCCATCACATCATGGACATAGCCCAGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACaa                              <  2:4446257/93‑1 (MQ=255)

                                                                 ccATCACATCATGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATgc                           >  1:5485908/1‑93 (MQ=255)

                                                                   atcacatcaTGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATgcgc                         >  1:6954629/1‑93 (MQ=255)

                                                                    tcacatcaTGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCa                        >  2:4060515/1‑93 (MQ=255)

                                                                      acatcaTGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCaaa                      >  1:6525360/1‑93 (MQ=255)

                                                                        atcatGGACATAGCCCGGTAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAAtt                    <  1:2803090/93‑1 (MQ=255)

                                                                          catGGACATAGCCCGGTAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCa                  >  1:6359207/1‑93 (MQ=255)

                                                                          catGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCa                  >  2:4416020/1‑93 (MQ=255)

                                                                          catGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCa                  <  2:5234304/93‑1 (MQ=255)

                                                                          catGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCa                  <  1:3449611/93‑1 (MQ=255)

                                                                           atGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAg                 <  2:2264355/93‑1 (MQ=255)

                                                                           atGGACATAGCCCGAAAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAACCATGACTATAGAGACAATGCGCAAATTCAg                 <  1:5881934/93‑1 (MQ=255)

                                                                           atGGACATAGCCCAGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAg                 >  2:265687/1‑93 (MQ=255)

                                                                           atGGACATAGCCCAGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAg                 <  1:2519574/93‑1 (MQ=255)

                                                                            tGGACATAGCCCGGCAATACAGCGAGCGGTAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAgg                >  1:597788/1‑93 (MQ=255)

                                                                            tGGACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAgg                >  2:7076210/1‑93 (MQ=255)

                                                                             ggACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGgc               <  2:305615/93‑1 (MQ=255)

                                                                             ggACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGgc               <  1:6300152/93‑1 (MQ=255)

                                                                             ggACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGgc               <  2:4564445/93‑1 (MQ=255)

                                                                              gACATAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGgcg              >  1:7139323/1‑93 (MQ=255)

                                                                               aCATAGCCCAGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGgcgc             >  2:6776812/1‑93 (MQ=255)

                                                                                 aTAGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCaa           <  1:182794/93‑1 (MQ=255)

                                                                                   aGCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCAATc         <  2:4246564/93‑1 (MQ=255)

                                                                                    gCCCGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCAATcc        <  2:7422970/93‑1 (MQ=255)

                                                                                     cccGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCAATCCg       <  1:6766861/93‑1 (MQ=255)

                                                                                       cGGCAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCAATCCGtt     <  2:3701407/93‑1 (MQ=255)

GCGGCTCAGCAAGGTGGCGAAATATTGCAGGCTGATAACCAATCCTGCCCAGAAGGCGCTAAAGCCCATCACATCATGGACATAGCCCGGTAATACAGCGAGCGGCAACCCGATGGTGAGGTAGCTGGCGAAGTTAAACATGACTATAGAGACAATGCGCAAATTCAGGCGCAATCCGTTTAG  >  NC_000913/3609155‑3609337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`