BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,878,432	A→G	C140R (TGC→CGC)	recF ←	RecF

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,878,432	0	A	G	85.6%	710.3 / 107.6	307	C140R (TGC→CGC)	recF	RecF
Reads supporting (aligned to +/- strand): ref base A (20/24); new base G (111/151); total (131/176)
Fisher's exact test for biased strand distribution p-value = 7.43e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.48e-01

Only 100 of 307 total aligned reads displayed.

CGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTG  >  NC_000913/3878341‑3878522

 gtgtCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTc                                                                                          <  1:1774983/93‑1 (MQ=255)

 gtgtCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTc                                                                                          >  1:2616559/1‑93 (MQ=255)

  tgtCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTcc                                                                                         <  2:566219/93‑1 (MQ=255)

  tgtCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTcc                                                                                         >  2:4633964/1‑93 (MQ=255)

      aCCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAg                                                                                     <  2:1523045/93‑1 (MQ=255)

      aCCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAg                                                                                     >  2:5712095/1‑93 (MQ=255)

       ccTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGt                                                                                    >  2:736435/1‑93 (MQ=255)

       ccTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGt                                                                                    <  2:4067583/93‑1 (MQ=255)

       ccTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGt                                                                                    >  2:5091979/1‑93 (MQ=255)

        cTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTc                                                                                   >  1:243534/1‑93 (MQ=255)

          ggCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGa                                                                                 <  1:5822274/93‑1 (MQ=255)

           gcgcAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAg                                                                                <  2:1857164/93‑1 (MQ=255)

           gcgcAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAg                                                                                <  1:6630043/93‑1 (MQ=255)

            cgcAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAgg                                                                               <  2:7063816/93‑1 (MQ=255)

            cgcAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCACTCGAgg                                                                               <  2:4719325/93‑1 (MQ=255)

             gcAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGa                                                                              <  1:5182385/93‑1 (MQ=255)

              cAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCTCCAGTCGAGGaa                                                                             <  1:3735004/93‑1 (MQ=255)

              cAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGaa                                                                             <  2:2362085/93‑1 (MQ=255)

              cAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGaa                                                                             >  1:4834496/1‑93 (MQ=255)

                 cgccgcATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGc                                                                          >  1:4631662/1‑93 (MQ=255)

                  gccgcATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGct                                                                         >  2:1685110/1‑93 (MQ=255)

                   ccgcATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGGAAGCGTCCCCAGTCGAGGAATGctc                                                                        >  2:75532/1‑93 (MQ=255)

                   ccgcATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGctc                                                                        <  1:7276857/93‑1 (MQ=255)

                     gcATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCtctt                                                                      >  2:1292791/1‑93 (MQ=255)

                      cATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCtcttc                                                                     <  1:6274315/93‑1 (MQ=255)

                      cATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCtcttc                                                                     <  1:3476277/93‑1 (MQ=255)

                      cATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCtcttc                                                                     >  1:1945814/1‑93 (MQ=255)

                       aTTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCtcttct                                                                    >  2:3552912/1‑93 (MQ=255)

                       aTTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCtcttct                                                                    >  1:2146519/1‑93 (MQ=255)

                        ttGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTg                                                                   >  1:3246436/1‑93 (MQ=255)

                          gcgcTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTa                                                                 <  2:309057/93‑1 (MQ=255)

                            gctgctTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTAtt                                                               <  2:6358181/93‑1 (MQ=255)

                            gctgctTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTAtt                                                               <  2:2433678/93‑1 (MQ=255)

                             ctgctTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTAttt                                                              <  2:6965313/93‑1 (MQ=255)

                             ctgctTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTAttt                                                              <  1:1352667/93‑1 (MQ=255)

                              tgctTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTg                                                             >  2:5348292/1‑93 (MQ=255)

                              tgctTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTg                                                             <  1:2696612/93‑1 (MQ=255)

                              tgctTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTg                                                             <  2:212944/93‑1 (MQ=255)

                               gctTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTgg                                                            >  2:7172967/1‑93 (MQ=255)

                               gctTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTgg                                                            <  1:5287483/93‑1 (MQ=255)

                                  tGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGgc                                                         <  2:2194337/93‑1 (MQ=255)

                                      cAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGgccgcc                                                     >  2:4850083/1‑93 (MQ=255)

                                           gCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGa                                                <  2:6031366/93‑1 (MQ=255)

                                           gCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGa                                                <  1:5460786/93‑1 (MQ=255)

                                            cTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGag                                               >  1:3713204/1‑93 (MQ=255)

                                             ttGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGagt                                              <  2:3879999/93‑1 (MQ=255)

                                               gagaTTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGagtaa                                            <  1:4991534/93‑1 (MQ=255)

                                               gagaTTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGagtaa                                            >  2:6312373/1‑93 (MQ=255)

                                                agaTTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGagtaaa                                           <  1:953778/93‑1 (MQ=255)

                                                   ttGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGagtaaagta                                        <  2:3414408/93‑1 (MQ=255)

                                                     gCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGagtaaagtann                                      >  1:355973/1‑91 (MQ=255)

                                                     gCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAgtaaagtaaa                                      >  2:1009108/1‑93 (MQ=255)

                                                     gCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAgtaaagtaaa                                      >  2:3268157/1‑93 (MQ=255)

                                                     gCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAgtaaagtaaa                                      <  1:3931159/93‑1 (MQ=255)

                                                     gCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAgtaaagtaaa                                      >  2:5805641/1‑93 (MQ=255)

                                                      cTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAAc                                     <  2:6448232/93‑1 (MQ=255)

                                                      cTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAAc                                     <  1:3881089/93‑1 (MQ=255)

                                                       tCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAAcc                                    >  2:6593842/1‑93 (MQ=255)

                                                         cAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCt                                  >  2:6794326/1‑93 (MQ=255)

                                                         cAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCt                                  <  1:460239/93‑1 (MQ=255)

                                                         cAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCt                                  >  2:4944126/1‑93 (MQ=255)

                                                           ggCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTc                                <  2:3148879/93‑1 (MQ=255)

                                                           ggCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTc                                >  1:4369057/1‑93 (MQ=255)

                                                           ggCGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTc                                <  2:545996/93‑1 (MQ=255)

                                                             cGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTg                              <  2:7304884/93‑1 (MQ=255)

                                                             cGGTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTg                              >  1:844695/1‑93 (MQ=255)

                                                              ggTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTgg                             >  1:2758436/1‑93 (MQ=255)

                                                              ggTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTgg                             <  1:5100781/93‑1 (MQ=255)

                                                              ggTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTgg                             <  2:1201562/93‑1 (MQ=255)

                                                               gTGAAAAATCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGc                            <  2:3488522/93‑1 (MQ=255)

                                                                  aaaaaTCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGtt                         <  2:4425332/93‑1 (MQ=255)

                                                                   aaaaTCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTa                        <  1:1142954/93‑1 (MQ=255)

                                                                   aaaaTCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTa                        >  2:3783738/1‑93 (MQ=255)

                                                                    aaaTCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTAt                       >  1:1053049/1‑93 (MQ=255)

                                                                     aaTCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATc                      <  2:3721024/93‑1 (MQ=255)

                                                                       tCCGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCaa                    >  2:3578681/1‑93 (MQ=255)

                                                                        ccGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCCTCTGGCGTTATCAAc                   >  2:2514809/1‑93 (MQ=255)

                                                                         cGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACt                  <  2:1756079/93‑1 (MQ=255)

                                                                         cGGGTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACt                  <  2:6640526/93‑1 (MQ=255)

                                                                          gggTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTg                 <  1:1531497/93‑1 (MQ=255)

                                                                            gTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCa               <  2:3370403/93‑1 (MQ=255)

                                                                            gTTCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCa               >  2:5886036/1‑93 (MQ=255)

                                                                             ttCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCAt              <  1:5591044/93‑1 (MQ=255)

                                                                             ttCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCAt              <  2:7487767/93‑1 (MQ=255)

                                                                              tCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCAtt             <  2:5404537/93‑1 (MQ=255)

                                                                              tCGTTGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCAtt             <  1:3068517/93‑1 (MQ=255)

                                                                              tCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCAtt             <  1:7440583/93‑1 (MQ=255)

                                                                              tCGTTATGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCAtt             <  1:648389/93‑1 (MQ=255)

                                                                               cGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTg            <  1:3679406/93‑1 (MQ=255)

                                                                                 ttGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGc          >  2:2704418/1‑93 (MQ=255)

                                                                                 ttGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGc          >  1:6094125/1‑93 (MQ=255)

                                                                                 ttGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGc          <  2:6197704/93‑1 (MQ=255)

                                                                                 ttGTGAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGc          >  1:7318953/1‑93 (MQ=255)

                                                                                   gtgAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCAt        >  1:4228724/1‑93 (MQ=255)

                                                                                   gtgAAAGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCAt        <  1:6889178/93‑1 (MQ=255)

                                                                                      aaaGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAg     <  1:600418/93‑1 (MQ=255)

                                                                                      aaaGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAg     >  2:5253247/1‑93 (MQ=255)

                                                                                       aaGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAgg    <  1:4810959/93‑1 (MQ=255)

                                                                                       aaGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAgg    >  1:6680140/1‑93 (MQ=255)

                                                                                        aGCGTCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGt   >  1:1042957/1‑93 (MQ=255)

CGTGTCACCTGGCGCAGCGCCGCATTGCGCTGCTTGAGCAATCGCTTGAGATTGCTCCAGGCGGTGAAAAATCCGGGTTCGTTGTGAAAGCATCCCCAGTCGAGGAATGCTCTTCTGTATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTG  >  NC_000913/3878341‑3878522

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`