Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,888,054 A→G N64D (AAT→GAT)  tnaB → low affinity tryptophan permease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,888,0540AG86.2% 726.0 / 101.2 296N64D (AAT→GAT) tnaBlow affinity tryptophan permease
Reads supporting (aligned to +/- strand):  ref base A (24/17);  new base G (132/123);  total (156/140)
Fisher's exact test for biased strand distribution p-value = 5.01e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.20e-01

Only 100 of 299 total aligned reads displayed.

TCTTGCCGGTGCCTGGTTTTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTGGAACATTATCAGCGGTATTACCGTTGCC  >  NC_000913/3887963‑3888146
                                                                                           |                                                                                            
 cTTGCCGGTGCCTGGTTTTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGAt                                                                                            <  2:2549086/93‑1 (MQ=255)
  ttGCCGGTGCCTGGTTTTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGAtt                                                                                           <  1:5441217/93‑1 (MQ=255)
   tGCCGGTGCCTGGTTTTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAAAttt                                                                                          <  2:1944915/93‑1 (MQ=255)
    gCCGGTGCCTGGTTTTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTa                                                                                         >  2:1479833/1‑93 (MQ=255)
     ccGGTGCCTGGTTTTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTaa                                                                                        >  2:1791207/1‑93 (MQ=255)
      cGGTGCCTGGTTTTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTaaa                                                                                       <  2:5947399/93‑1 (MQ=255)
        gTGCCTGGTTTTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAAtt                                                                                     >  2:6509804/1‑93 (MQ=255)
         tGCCTGGTTTTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTa                                                                                    <  2:2159263/93‑1 (MQ=255)
         tGCCTGGTTTTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTa                                                                                    <  2:5271645/93‑1 (MQ=255)
         tGCCTGGTTTTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTa                                                                                    <  1:1943074/93‑1 (MQ=255)
          gCCTGGTTTTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTAt                                                                                   <  2:6045337/93‑1 (MQ=255)
           ccTGGTTTTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATc                                                                                  <  1:3505641/93‑1 (MQ=255)
           ccTGGTTTTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAAATTTAAATTATc                                                                                  <  1:6479058/93‑1 (MQ=255)
            cTGGTTTTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATcc                                                                                 >  2:5023404/1‑93 (MQ=255)
             tGGTTTTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATccc                                                                                >  1:1997518/1‑93 (MQ=255)
             tGGTTTTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATccc                                                                                >  1:2957896/1‑93 (MQ=255)
             tGGTTTTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATccc                                                                                >  1:7409325/1‑93 (MQ=255)
             tGGTTTTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAAATTTAAATTATccc                                                                                >  1:3750365/1‑93 (MQ=255)
              ggTTTTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCg                                                                               <  1:7124361/93‑1 (MQ=255)
               gTTTTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGt                                                                              >  2:5495989/1‑93 (MQ=255)
               gTTTTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGt                                                                              >  2:2844281/1‑93 (MQ=255)
                tttttCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTc                                                                             <  1:4655690/93‑1 (MQ=255)
                       ggggTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCa                                                                      <  2:405136/93‑1 (MQ=255)
                         ggTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGt                                                                    >  2:6558250/1‑93 (MQ=255)
                         ggTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGt                                                                    <  2:727047/93‑1 (MQ=255)
                          gTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGtt                                                                   >  2:6791496/1‑93 (MQ=255)
                           tGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGttt                                                                  >  1:751706/1‑93 (MQ=255)
                            gCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGtttt                                                                 >  1:5542768/1‑93 (MQ=255)
                            gCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGttnn                                                                 >  1:1297794/1‑91 (MQ=255)
                              cTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTaa                                                               <  2:6379805/93‑1 (MQ=255)
                              cTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTaa                                                               >  1:3609087/1‑93 (MQ=255)
                               tttATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAac                                                              <  2:673700/93‑1 (MQ=255)
                               tttATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAac                                                              >  2:3807022/1‑93 (MQ=255)
                               tttATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAac                                                              >  1:4784295/1‑93 (MQ=255)
                               tttATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAac                                                              >  1:6689311/1‑93 (MQ=255)
                               tttATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAac                                                              >  2:2949328/1‑93 (MQ=255)
                                ttATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAaca                                                             >  1:3913903/1‑93 (MQ=255)
                                   tCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCa                                                          >  1:5938621/1‑93 (MQ=255)
                                    ccTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCAt                                                         >  2:4923629/1‑93 (MQ=255)
                                     cTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATc                                                        <  2:1156678/93‑1 (MQ=255)
                                       tATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCAc                                                      >  2:3250890/1‑93 (MQ=255)
                                         tCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCa                                                    >  1:1471488/1‑93 (MQ=255)
                                         tCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCa                                                    <  1:4853492/93‑1 (MQ=255)
                                          cATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCaa                                                   >  1:6818491/1‑93 (MQ=255)
                                           aTTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCaaa                                                  <  2:697284/93‑1 (MQ=255)
                                            ttGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAg                                                 >  1:2642795/1‑93 (MQ=255)
                                              gCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGAt                                               >  1:1156167/1‑93 (MQ=255)
                                               ccTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGAtt                                              >  1:6259387/1‑93 (MQ=255)
                                               ccTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGAtt                                              <  1:3036531/93‑1 (MQ=255)
                                                cTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGAttt                                             >  2:1426845/1‑93 (MQ=255)
                                                cTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGAttt                                             >  1:3550773/1‑93 (MQ=255)
                                                cTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGAttt                                             >  2:612889/1‑93 (MQ=255)
                                                  ggTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTaa                                           <  1:2348134/93‑1 (MQ=255)
                                                   gTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAAt                                          <  1:841257/93‑1 (MQ=255)
                                                   gTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAAt                                          >  2:3435167/1‑93 (MQ=255)
                                                     tttCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCg                                        <  2:5911893/93‑1 (MQ=255)
                                                       ttaaTTCTTCCTTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGGCGGCTCCAATTTTAACACCATCGCCAAAGATTTAATCGGt                                      <  1:5734700/91‑1 (MQ=255)
                                                       tCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGt                                      >  1:6376124/1‑93 (MQ=255)
                                                       tCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGt                                      >  1:7274976/1‑93 (MQ=255)
                                                        cAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTACCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTa                                     <  1:7003895/93‑1 (MQ=255)
                                                         aaTGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTaa                                    <  2:7344161/93‑1 (MQ=255)
                                                         aaTGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTaa                                    >  2:5582578/1‑93 (MQ=255)
                                                         aaTGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTaa                                    >  2:3160700/1‑93 (MQ=255)
                                                         aaTGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTaa                                    >  1:7480697/1‑93 (MQ=255)
                                                           tGCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAaca                                  >  2:1066011/1‑93 (MQ=255)
                                                            gCTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAacac                                 >  2:5781990/1‑93 (MQ=255)
                                                            gCTTCATTCCGGGTTATTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAacac                                 >  2:5673635/1‑93 (MQ=255)
                                                             cTTCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACAcc                                <  1:4200244/93‑1 (MQ=255)
                                                              ttCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCt                               >  2:271951/1‑93 (MQ=255)
                                                              ttCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCt                               >  1:2132800/1‑93 (MQ=255)
                                                               tCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTg                              <  2:1700476/93‑1 (MQ=255)
                                                               tCATTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTg                              <  1:434391/93‑1 (MQ=255)
                                                               tCATTCCGGGTTATTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTg                              <  2:4634514/93‑1 (MQ=255)
                                                                 aTTCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTGGa                            <  2:2230487/93‑1 (MQ=255)
                                                                  ttCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTGGaa                           >  1:5667436/1‑93 (MQ=255)
                                                                  ttCCGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTGGaa                           >  2:4790326/1‑93 (MQ=255)
                                                                    ccGGGTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTGGAACa                         <  1:5143758/93‑1 (MQ=255)
                                                                      gggTTATTGTTATTAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTGGAACAtt                       >  1:7376101/1‑93 (MQ=255)
                                                                        gttattgttattAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTGGAACATTAt                     >  2:2102479/1‑93 (MQ=255)
                                                                        gttattgttattAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTGGAACATTAt                     >  1:3193923/1‑93 (MQ=255)
                                                                         ttattgttattAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTGGAACATTATc                    <  2:3676139/93‑1 (MQ=255)
                                                                            ttgttattAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTGGAACATTATCAGc                 >  2:6227441/1‑93 (MQ=255)
                                                                            ttgttattAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTGGAACATTATCAGc                 <  1:1594094/93‑1 (MQ=255)
                                                                             tgttattAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTGGAACATTATCAGCg                <  1:2779395/93‑1 (MQ=255)
                                                                              gttattAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTGGAACATTATCAGCgg               >  2:75204/1‑93 (MQ=255)
                                                                              gttattAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTGGAACATTATCAGCgg               <  2:4703680/93‑1 (MQ=255)
                                                                              gttattAGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTGGAACATTATCAGCgg               >  1:4071288/1‑93 (MQ=255)
                                                                                tattaGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTGGAACATTATCAGCGGTa             <  2:1239245/93‑1 (MQ=255)
                                                                                 attaGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTGGAACATTATCAGCGGTAt            <  2:6181575/93‑1 (MQ=255)
                                                                                 attaGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTGGAACATTATCAGCGGTAt            <  2:3993556/93‑1 (MQ=255)
                                                                                  ttaGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTGGAACATTATCAGCGGTAtt           >  1:3293805/1‑93 (MQ=255)
                                                                                   taGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTGGAACATTATCAGCGGTATTa          <  2:4865201/93‑1 (MQ=255)
                                                                                    aGAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTGGAACATTATCAGCGGTATTAc         <  2:1670169/93‑1 (MQ=255)
                                                                                     gAAGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTGGAACATTATCAGCGGTATTAcc        >  2:6894373/1‑93 (MQ=255)
                                                                                      aaGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTGGAACATTATCAGCGGTATTACCg       <  2:2797480/93‑1 (MQ=255)
                                                                                       aGCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTGGAACATTATCAGCGGTATTACCGt      >  2:1558300/1‑93 (MQ=255)
                                                                                        gCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTGGAACATTATCAGCGGTATTACCGtt     <  2:4151931/93‑1 (MQ=255)
                                                                                        gCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTGGAACATTATCAGCGGTATTACCGtt     <  2:3565467/93‑1 (MQ=255)
                                                                                        gCAGATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTGGAACATTATCAGCGGTATTACCGtt     >  1:103760/1‑93 (MQ=255)
                                                                                           aaTTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTGGAACATTATCAGCGGTATTACCGTTGcc  >  2:5200336/1‑93 (MQ=255)
                                                                                           |                                                                                            
TCTTGCCGGTGCCTGGTTTTTCTGGGGTGCCTTTATCCTTATCATTGCCTGGTTTTCAATGCTTCATTCCGGGTTATTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCGGTAACACCTGGAACATTATCAGCGGTATTACCGTTGCC  >  NC_000913/3887963‑3888146

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: