Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,911,336 T→C intergenic (‑40/+122) glmS ← / ← glmU L‑glutamine:D‑fructose‑6‑phosphate aminotransferase/N‑acetyl glucosamine‑1‑phosphate uridyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,911,3360TC83.9% 694.3 / 130.8 316intergenic (‑40/+122)glmS/glmUL‑glutamine:D‑fructose‑6‑phosphate aminotransferase/N‑acetyl glucosamine‑1‑phosphate uridyltransferase
Reads supporting (aligned to +/- strand):  ref base T (26/25);  new base C (129/136);  total (155/161)
Fisher's exact test for biased strand distribution p-value = 8.79e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.99e-01

Only 100 of 316 total aligned reads displayed.

GAAGGATTTCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTATCTCCTC  >  NC_000913/3911245‑3911427
                                                                                           |                                                                                           
gaagGATTTCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTa                                                                                            >  1:381971/1‑93 (MQ=255)
 aagGATTTCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCAt                                                                                           >  1:5688650/1‑93 (MQ=255)
 aagGATTTCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCAt                                                                                           <  2:2506861/93‑1 (MQ=255)
 aagGATTTCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCAt                                                                                           >  1:2112870/1‑93 (MQ=255)
    gATTTCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGcc                                                                                        <  1:18833/93‑1 (MQ=255)
        tCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGtt                                                                                    <  1:4896384/93‑1 (MQ=255)
        tCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGtt                                                                                    >  2:847374/1‑93 (MQ=255)
         cTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGttt                                                                                   >  1:3428538/1‑93 (MQ=255)
         cTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGttt                                                                                   >  1:2743701/1‑93 (MQ=255)
           gCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGttttt                                                                                 >  1:5826168/1‑93 (MQ=255)
             tACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATGTCGTTGTCGGTCAACCTGTATGCCCGTTTTTTc                                                                               <  2:322806/93‑1 (MQ=255)
             tACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTc                                                                               >  1:5290898/1‑93 (MQ=255)
                 tCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGgc                                                                           <  1:2069141/93‑1 (MQ=255)
                 tCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGgc                                                                           <  2:2765434/93‑1 (MQ=255)
                   aCGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGgcgc                                                                         >  2:4714766/1‑93 (MQ=255)
                   aCGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGgcgc                                                                         >  2:3704461/1‑93 (MQ=255)
                    cGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGcc                                                                        <  2:3250308/93‑1 (MQ=255)
                     gTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGccc                                                                       <  2:1779708/93‑1 (MQ=255)
                      ttGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGcccc                                                                      <  1:6953021/93‑1 (MQ=255)
                      ttGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGcccc                                                                      >  2:3091541/1‑93 (MQ=255)
                        gcgcGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGa                                                                    <  1:5011608/93‑1 (MQ=255)
                           cgATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGcc                                                                 <  2:4926675/93‑1 (MQ=255)
                           cgATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGcc                                                                 <  2:2349149/93‑1 (MQ=255)
                            gATCGCGCCAACAATTCCACACATCGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCt                                                                <  2:4789852/93‑1 (MQ=255)
                             aTCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCtt                                                               >  2:6979723/1‑93 (MQ=255)
                             aTCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCtt                                                               <  1:2807066/93‑1 (MQ=255)
                             aTCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCtt                                                               <  1:254042/93‑1 (MQ=255)
                                gcgcCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTa                                                            >  1:3063440/1‑93 (MQ=255)
                                gcgcCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTa                                                            <  2:5252804/93‑1 (MQ=255)
                                gcgcCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTa                                                            <  1:832331/93‑1 (MQ=255)
                                 cgcCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTag                                                           <  2:1194878/93‑1 (MQ=255)
                                  gcCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTaga                                                          <  1:5957120/93‑1 (MQ=255)
                                  gcCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTaga                                                          >  2:6009330/1‑93 (MQ=255)
                                  gcCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTaga                                                          <  1:448148/93‑1 (MQ=255)
                                   ccAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTagag                                                         <  2:6406083/93‑1 (MQ=255)
                                   ccAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTagag                                                         >  1:1154936/1‑93 (MQ=255)
                                   ccAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTagag                                                         >  2:4433923/1‑93 (MQ=255)
                                    caacaaTTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTagaga                                                        >  2:2055339/1‑93 (MQ=255)
                                    caacaaTTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTagaga                                                        >  2:6677246/1‑93 (MQ=255)
                                    caacaaTTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTagaga                                                        <  1:1849850/93‑1 (MQ=255)
                                     aacaaTTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTagagag                                                       >  1:1997756/1‑93 (MQ=255)
                                     aacaaTTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTagagag                                                       >  1:4682328/1‑93 (MQ=255)
                                      acaaTTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGt                                                      >  2:646317/1‑93 (MQ=255)
                                      acaaTTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGt                                                      <  1:1950515/93‑1 (MQ=255)
                                        aaTTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTgg                                                    <  1:2437438/93‑1 (MQ=255)
                                          ttCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTgggg                                                  >  1:6387539/1‑93 (MQ=255)
                                              acacaTAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTAt                                              >  2:5090084/1‑93 (MQ=255)
                                              acacaTAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTAt                                              >  2:1908990/1‑93 (MQ=255)
                                                acaTAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTAttt                                            >  2:4252028/1‑93 (MQ=255)
                                                acaTAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTAttt                                            >  1:2685084/1‑93 (MQ=255)
                                                 caTAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTAttnn                                           >  2:1477385/1‑91 (MQ=255)
                                                 caTAGTTTTTGATTCCGATTTACATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGATAtttt                                           >  2:5902834/1‑93 (MQ=255)
                                                   tAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTta                                         <  2:7022376/93‑1 (MQ=255)
                                                   tAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTta                                         >  2:3843719/1‑93 (MQ=255)
                                                   tAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTta                                         >  2:1965263/1‑93 (MQ=255)
                                                   tAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTta                                         <  2:101490/93‑1 (MQ=255)
                                                     gTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTtata                                       <  1:3653389/93‑1 (MQ=255)
                                                      tttttGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAg                                      <  2:2001906/93‑1 (MQ=255)
                                                      tttttGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAg                                      <  2:4822882/93‑1 (MQ=255)
                                                      tttttGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAg                                      >  2:1640367/1‑93 (MQ=255)
                                                       ttttGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGt                                     <  1:3292720/93‑1 (MQ=255)
                                                          tGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTAc                                  >  1:922169/1‑93 (MQ=255)
                                                           gATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACt                                 <  2:5420061/93‑1 (MQ=255)
                                                           gATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACt                                 >  1:1741217/1‑93 (MQ=255)
                                                            aTTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCTCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTg                                >  2:5631107/1‑93 (MQ=255)
                                                            aTTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTg                                >  1:1579353/1‑93 (MQ=255)
                                                             ttCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGc                               <  1:1062100/93‑1 (MQ=255)
                                                             ttCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGc                               >  2:4642542/1‑93 (MQ=255)
                                                              tCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCt                              <  2:824625/93‑1 (MQ=255)
                                                              tCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCt                              <  2:6083122/93‑1 (MQ=255)
                                                                 gATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTtgt                           >  2:5835645/1‑93 (MQ=255)
                                                                 gATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTtgt                           <  1:1416695/93‑1 (MQ=255)
                                                                  aTTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTtgtg                          <  1:406947/93‑1 (MQ=255)
                                                                  aTTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTtgtg                          >  1:3950033/1‑93 (MQ=255)
                                                                   tttATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTgg                         <  2:6800043/93‑1 (MQ=255)
                                                                     tataTCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTggga                       >  2:4019786/1‑93 (MQ=255)
                                                                      atatCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTgggag                      <  1:1723608/93‑1 (MQ=255)
                                                                       tatCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTgggagg                     >  2:7376024/1‑93 (MQ=255)
                                                                       tatCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTgggagg                     >  1:2847781/1‑93 (MQ=255)
                                                                        atCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTgggaggg                    >  2:2422961/1‑93 (MQ=255)
                                                                        atCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTgggaggg                    >  1:6827042/1‑93 (MQ=255)
                                                                        atCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTgggaggg                    >  1:6551017/1‑93 (MQ=255)
                                                                        atCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTgggaggg                    >  1:6641589/1‑93 (MQ=255)
                                                                         tCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTgggaggga                   <  1:752688/93‑1 (MQ=255)
                                                                         tCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGGGGGGTTATTTTTATAGTTACTGCTTGTgggaggga                   >  1:7063877/1‑93 (MQ=255)
                                                                           gTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGgaga                 <  2:3053030/93‑1 (MQ=255)
                                                                            ttGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGAt                >  1:2343560/1‑93 (MQ=255)
                                                                            ttGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGAt                <  2:4553059/93‑1 (MQ=255)
                                                                             tGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGAtt               >  1:6085091/1‑93 (MQ=255)
                                                                              gTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTa              >  2:3612373/1‑93 (MQ=255)
                                                                                 ggTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGt           >  1:5642173/1‑93 (MQ=255)
                                                                                  gTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGtt          <  1:354394/93‑1 (MQ=255)
                                                                                   tCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTa         >  2:6538442/1‑93 (MQ=255)
                                                                                   tCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTa         >  2:4389434/1‑93 (MQ=255)
                                                                                    cAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTAt        <  2:337008/93‑1 (MQ=255)
                                                                                    cAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTAt        >  2:7179845/1‑93 (MQ=255)
                                                                                     aaCCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTAtc       <  2:1812570/93‑1 (MQ=255)
                                                                                      aCCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTAtct      >  1:3173406/1‑93 (MQ=255)
                                                                                        cTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTATctcc    <  2:5503395/93‑1 (MQ=255)
                                                                                        cTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTATctcc    <  2:4168809/93‑1 (MQ=255)
                                                                                           |                                                                                           
GAAGGATTTCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTATCTCCTC  >  NC_000913/3911245‑3911427

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: