Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,916,949 A→G A179A (GCT→GCC atpA ← membrane‑bound ATP synthase, F1 sector, alpha‑subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,916,9490AG84.1% 624.6 / 116.2 276A179A (GCT→GCCatpAmembrane‑bound ATP synthase, F1 sector, alpha‑subunit
Reads supporting (aligned to +/- strand):  ref base A (24/20);  new base G (121/111);  total (145/131)
Fisher's exact test for biased strand distribution p-value = 8.70e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.62e-01

Only 100 of 276 total aligned reads displayed.

GTACCACGTTAGAAATGGTGGACGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAAC  >  NC_000913/3916858‑3917040
                                                                                           |                                                                                            
  aCCACGTTAGAAATGGTGGACGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGcc                                                                                           >  2:5185453/1‑93 (MQ=255)
  aCCACGTTAGAAATGGTGGACGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGcc                                                                                           >  1:6905448/1‑93 (MQ=255)
    cACGTTAGAAATGGTGGACGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAg                                                                                         <  1:7389473/93‑1 (MQ=255)
       gTTAGAAATGGTGGACGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGc                                                                                      <  2:1016052/93‑1 (MQ=255)
        ttAGAAATGGTGGACGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCg                                                                                    >  1:2570314/1‑93 (MQ=255)
         tAGAAATGGTGGACGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCgg                                                                                   <  2:1452657/93‑1 (MQ=255)
         tAGAAATGGTGGACGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCgg                                                                                   >  2:5679327/1‑93 (MQ=255)
         tAGAAATGGTGGACGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCgg                                                                                   <  1:885559/93‑1 (MQ=255)
           gAAATGGTGGACGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGtt                                                                                 <  2:7165742/93‑1 (MQ=255)
            aaaTGGTGGACGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGttt                                                                                <  2:2586647/93‑1 (MQ=255)
            aaaTGGTGGACGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGttt                                                                                <  1:2683733/93‑1 (MQ=255)
               tggtggACGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTAc                                                                             <  1:3601968/93‑1 (MQ=255)
                ggtggACGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTAcc                                                                            <  2:3031566/93‑1 (MQ=255)
                ggtggACGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTAcc                                                                            <  2:5228030/93‑1 (MQ=255)
                  tggACGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTg                                                                          <  2:2951716/93‑1 (MQ=255)
                   ggACGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGt                                                                         >  1:5667519/1‑93 (MQ=255)
                   ggACGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGt                                                                         <  1:1165561/93‑1 (MQ=255)
                    gACGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTc                                                                        <  2:5988877/93‑1 (MQ=255)
                     aCGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCt                                                                       <  1:6991527/93‑1 (MQ=255)
                     aCGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCt                                                                       <  1:514445/93‑1 (MQ=255)
                      cGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTg                                                                      >  1:5444005/1‑93 (MQ=255)
                       gCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGGTGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCTGa                                                                     <  2:6120464/93‑1 (MQ=255)
                       gCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGa                                                                     <  2:6854322/93‑1 (MQ=255)
                       gCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGa                                                                     <  2:5318018/93‑1 (MQ=255)
                       gCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGa                                                                     >  1:4238474/1‑93 (MQ=255)
                       gCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGa                                                                     >  1:2286635/1‑93 (MQ=255)
                       gCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGa                                                                     <  1:3858108/93‑1 (MQ=255)
                       gCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCTGa                                                                     >  2:5466176/1‑93 (MQ=255)
                        cTTTCTGGCCGATAGCGACATAGATACGTTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGAc                                                                    >  2:6421260/1‑93 (MQ=255)
                         tttCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGGTTTTACTTGTCTGAc                                                                    >  1:6166153/1‑93 (MQ=255)
                         tttCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCTGACg                                                                   <  2:5795109/93‑1 (MQ=255)
                           tCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGt                                                                 >  1:2232116/1‑93 (MQ=255)
                              ggCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCAc                                                              <  2:3922352/93‑1 (MQ=255)
                               gCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCAcc                                                             >  1:1996968/1‑93 (MQ=255)
                                 cGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCga                                                           <  2:7056706/93‑1 (MQ=255)
                                  gATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCgat                                                          <  2:2048964/93‑1 (MQ=255)
                                  gATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCgat                                                          >  2:4121983/1‑93 (MQ=255)
                                   aTAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCgatg                                                         <  1:4550124/93‑1 (MQ=255)
                                    tAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCgatga                                                        <  1:373001/93‑1 (MQ=255)
                                    tAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCgatga                                                        <  1:7512354/93‑1 (MQ=255)
                                     aGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCgatgat                                                       >  2:3864390/1‑93 (MQ=255)
                                      gCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATc                                                      >  2:7249463/1‑93 (MQ=255)
                                      gCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATc                                                      <  2:4770337/93‑1 (MQ=255)
                                      gCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATc                                                      >  2:3110810/1‑93 (MQ=255)
                                         aCATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAAt                                                   >  1:4592849/1‑93 (MQ=255)
                                         aCATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAAt                                                   >  2:3547243/1‑93 (MQ=255)
                                          cATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAAtt                                                  >  1:6083750/1‑93 (MQ=255)
                                           aTAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTc                                                 >  1:6764730/1‑93 (MQ=255)
                                            tAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCa                                                >  2:6942685/1‑93 (MQ=255)
                                              gATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACg                                              >  2:1328546/1‑93 (MQ=255)
                                               aTACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGc                                             <  1:3229810/93‑1 (MQ=255)
                                               aTACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGc                                             <  1:5260259/93‑1 (MQ=255)
                                                tACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCt                                            >  1:5063233/1‑93 (MQ=255)
                                                tACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCt                                            <  1:4674564/93‑1 (MQ=255)
                                                tACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCt                                            >  2:470846/1‑93 (MQ=255)
                                                  cATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGa                                          >  2:1129254/1‑93 (MQ=255)
                                                  cATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGa                                          <  1:1556152/93‑1 (MQ=255)
                                                  cATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGa                                          >  1:2385570/1‑93 (MQ=255)
                                                   aTTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGAc                                         >  2:720772/1‑93 (MQ=255)
                                                   aTTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGAc                                         >  1:136301/1‑93 (MQ=255)
                                                      tGATACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCAc                                      <  2:1819262/93‑1 (MQ=255)
                                                        aTACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGa                                    <  2:512532/93‑1 (MQ=255)
                                                         tACCGGAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGAc                                   <  2:5251934/93‑1 (MQ=255)
                                                         tACCGGAATCGCGCTGGTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGAc                                   >  2:7029965/1‑93 (MQ=255)
                                                             ggAATCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGAt                               >  1:6926541/1‑93 (MQ=255)
                                                               aaTCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTg                             <  1:3104147/93‑1 (MQ=255)
                                                               aaTCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTg                             <  2:4537408/93‑1 (MQ=255)
                                                               aaTCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTg                             <  2:4628373/93‑1 (MQ=255)
                                                               aaTCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTg                             <  1:5194987/93‑1 (MQ=255)
                                                                aTCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTgg                            >  2:5892651/1‑93 (MQ=255)
                                                                aTCGCGCTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTgg                            <  1:2896999/93‑1 (MQ=255)
                                                                   gcgcTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGAt                         >  1:1001634/1‑93 (MQ=255)
                                                                   gcgcTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGAt                         >  2:2542839/1‑93 (MQ=255)
                                                                     gcTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCa                       >  1:4867416/1‑93 (MQ=255)
                                                                      cTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCAt                      <  1:4114486/93‑1 (MQ=255)
                                                                      cTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCAt                      <  1:5555533/93‑1 (MQ=255)
                                                                      cTGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCAt                      >  1:2471848/1‑93 (MQ=255)
                                                                      cTGGTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCAt                      <  2:896217/93‑1 (MQ=255)
                                                                       tGGTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATg                     >  2:7391162/1‑93 (MQ=255)
                                                                        ggTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATgg                    <  2:5000503/93‑1 (MQ=255)
                                                                        ggTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATgg                    <  1:3205691/93‑1 (MQ=255)
                                                                         gTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGa                   >  2:265818/1‑93 (MQ=255)
                                                                         gTTGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACCGTCTCCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGa                   <  1:948402/93‑1 (MQ=255)
                                                                         gTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGa                   >  2:7455586/1‑93 (MQ=255)
                                                                          ttGATGATGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAg                  >  2:1156262/1‑93 (MQ=255)
                                                                            gatgatGGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTc                >  1:7044567/1‑93 (MQ=255)
                                                                             atgatgGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCa               <  1:1026802/93‑1 (MQ=255)
                                                                               gatgGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAAc             <  2:6323679/93‑1 (MQ=255)
                                                                                atgGCATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACg            <  1:1288092/93‑1 (MQ=255)
                                                                                atgGCATCGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACg            >  2:4850353/1‑93 (MQ=255)
                                                                                    cATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCtt        <  1:3488950/93‑1 (MQ=255)
                                                                                    cATCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCtt        >  2:1837056/1‑93 (MQ=255)
                                                                                     aTCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCttt       >  1:6272381/1‑93 (MQ=255)
                                                                                      tCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTta      >  1:6458875/1‑93 (MQ=255)
                                                                                      tCGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTta      <  2:3764627/93‑1 (MQ=255)
                                                                                       cGATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTtat     <  1:1385037/93‑1 (MQ=255)
                                                                                        gATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTtata    >  2:3189012/1‑93 (MQ=255)
                                                                                        gATGGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTtata    >  2:4315710/1‑93 (MQ=255)
                                                                                        gATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTtata    >  1:5995698/1‑93 (MQ=255)
                                                                                         aTAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATaa   >  2:6515091/1‑93 (MQ=255)
                                                                                           |                                                                                            
GTACCACGTTAGAAATGGTGGACGCTTTCTGGCCGATAGCGACATAGATACATTTGATACCGGAATCGCGCTGGTTGATGATGGCATCGATAGCCAGTGCGGTTTTACCTGTCTGACGGTCACCGATGATCAATTCACGCTGACCACGACCGATTGGGATCATGGAGTCAACGGCTTTATAAC  >  NC_000913/3916858‑3917040

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: