Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 531,406 C→T A14T (GCT→ACT)  ybbS ← putative transcriptional regulator LYSR‑type

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913531,4060CT91.0% 1022.2 / 52.3 322A14T (GCT→ACT) ybbSputative transcriptional regulator LYSR‑type
Reads supporting (aligned to +/- strand):  ref base C (12/17);  new base T (153/140);  total (165/157)
Fisher's exact test for biased strand distribution p-value = 3.31e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.02e-01

Only 100 of 324 total aligned reads displayed.

GGTATTCTCTTCCAGAAGTTTAATGCGATAACTGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGCAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCAAGTTGCGTGATTTTCTTATCCTC  >  NC_000913/531314‑531495
                                                                                            |                                                                                         
ggTATTCTCTTCCAGAAGTTTAATGCGATAACTGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGc                                                                                           >  2:2960280/1‑93 (MQ=255)
   aTTCTCTTCCAGAAGTTTAATGCGATAACTGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAAc                                                                                        >  2:779746/1‑93 (MQ=255)
    ttCTCTTCCAGAAGTTTAATGCGATAACTGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAAcc                                                                                       >  1:6663975/1‑93 (MQ=255)
    ttCTCTTCCAGAAGTTTAATGCGATAACTGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAAcc                                                                                       >  1:5403974/1‑93 (MQ=255)
    ttCTCTTCCAGAAGTTTAATGCGATAACTGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAAcc                                                                                       >  2:5338323/1‑93 (MQ=255)
     tctcTTCCAGAAGTTTAATGCGATAACTGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCg                                                                                      >  1:4358570/1‑93 (MQ=255)
     tctcTTCCAGAAGTTTAATGCGATAACTGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCg                                                                                      >  2:5655443/1‑93 (MQ=255)
      ctctTCCAGAAGTTTAATGCGATAACTGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGc                                                                                     <  2:4174092/93‑1 (MQ=255)
       tctTCCAGAAGTTTAATGCGATAACTGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCa                                                                                    >  1:342678/1‑93 (MQ=255)
         ttCCAGAAGTTTAATGCGATAACTGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAAt                                                                                  >  2:7366341/1‑93 (MQ=255)
         ttCCAGAAGTTTAATGCGATAACTGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAAt                                                                                  <  1:4927726/93‑1 (MQ=255)
          tCCAGAAGTTTAATGCGATAACTGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATg                                                                                 >  1:3600846/1‑93 (MQ=255)
           ccAGAAGTTTAATGCGATAACTGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGCAACCGCAATGa                                                                                >  2:337627/1‑93 (MQ=255)
             aGAAGTTTAATGCGATAACTGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGaaa                                                                              >  2:6952302/1‑93 (MQ=255)
              gAAGTTTAATGCGATAACTGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAg                                                                             <  2:4652455/93‑1 (MQ=255)
                  tttAATGCGATAACTGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCg                                                                         >  2:834256/1‑93 (MQ=255)
                       tGCGATAACTGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAgg                                                                    <  2:6306202/93‑1 (MQ=255)
                           aTAACTGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTc                                                                >  2:5301497/1‑93 (MQ=255)
                            tAACTGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCt                                                               <  1:4602825/93‑1 (MQ=255)
                            tAACTGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCt                                                               >  2:7101121/1‑93 (MQ=255)
                             aaCTGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTg                                                              <  1:5310080/93‑1 (MQ=255)
                             aaCTGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTg                                                              <  1:7385971/93‑1 (MQ=255)
                              aCTGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTgg                                                             >  1:3160823/1‑93 (MQ=255)
                              aCTGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTgg                                                             >  2:7168798/1‑93 (MQ=255)
                               cTGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGa                                                            >  2:3178298/1‑93 (MQ=255)
                               cTGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGa                                                            >  2:2029918/1‑93 (MQ=255)
                               cTGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGa                                                            >  2:1210731/1‑93 (MQ=255)
                               cTGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGa                                                            >  2:5866162/1‑93 (MQ=255)
                                tGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGAt                                                           <  1:2537425/93‑1 (MQ=255)
                                 gATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATc                                                          >  2:935798/1‑93 (MQ=255)
                                 gATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATc                                                          >  1:1865792/1‑93 (MQ=255)
                                    cgtcgCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGaa                                                       <  1:642148/93‑1 (MQ=255)
                                     gtcgCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAAc                                                      <  1:803705/93‑1 (MQ=255)
                                     gtcgCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGCAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAAc                                                      <  1:7410550/93‑1 (MQ=255)
                                      tcgCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACa                                                     >  1:587871/1‑93 (MQ=255)
                                      tcgCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACa                                                     <  2:5025969/93‑1 (MQ=255)
                                       cgCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACAt                                                    <  2:496192/93‑1 (MQ=255)
                                        gCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGCAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATc                                                   >  1:121779/1‑93 (MQ=255)
                                         ccGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCt                                                  >  2:3832729/1‑93 (MQ=255)
                                          cGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCtt                                                 >  1:4867082/1‑93 (MQ=255)
                                           gTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTc                                                <  2:1148448/93‑1 (MQ=255)
                                           gTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTc                                                >  1:2659120/1‑93 (MQ=255)
                                            tGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCa                                               <  2:5070457/93‑1 (MQ=255)
                                            tGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCa                                               <  2:7510005/93‑1 (MQ=255)
                                            tGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCa                                               >  2:1813702/1‑93 (MQ=255)
                                            tGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCa                                               >  1:2918456/1‑93 (MQ=255)
                                            tGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCa                                               <  2:3626370/93‑1 (MQ=255)
                                            tGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCa                                               <  1:5133552/93‑1 (MQ=255)
                                            tGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCa                                               <  2:6385211/93‑1 (MQ=255)
                                              gTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAgg                                             <  2:6647653/93‑1 (MQ=255)
                                              gTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAgg                                             >  2:7208289/1‑93 (MQ=255)
                                               ttttACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGt                                            >  2:3072961/1‑93 (MQ=255)
                                                tttACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTa                                           >  1:1574359/1‑93 (MQ=255)
                                                 ttACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTAt                                          >  2:7325289/1‑93 (MQ=255)
                                                  tACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATc                                         >  1:5992372/1‑93 (MQ=255)
                                                  tACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATc                                         <  1:1119748/93‑1 (MQ=255)
                                                   aCATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATcc                                        >  1:4429490/1‑93 (MQ=255)
                                                    cATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATccc                                       >  2:4031864/1‑93 (MQ=255)
                                                    cATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATccc                                       <  2:3770151/93‑1 (MQ=255)
                                                    cATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATccc                                       >  1:2831822/1‑93 (MQ=255)
                                                      tAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCt                                     >  2:1561349/1‑93 (MQ=255)
                                                       aaTCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCtt                                    >  1:2457787/1‑93 (MQ=255)
                                                       aaTCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCtt                                    <  2:5569280/93‑1 (MQ=255)
                                                       aaTCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGAATCCCCtt                                    >  2:1645691/1‑93 (MQ=255)
                                                        aTCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCttt                                   <  2:7266394/93‑1 (MQ=255)
                                                        aTCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCttt                                   >  1:4633017/1‑93 (MQ=255)
                                                          cGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTa                                 <  2:1743851/93‑1 (MQ=255)
                                                            ttCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTaaa                               <  1:978126/93‑1 (MQ=255)
                                                             tCTGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAAt                              <  2:3270773/93‑1 (MQ=255)
                                                               tGCCGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATcc                            <  1:2393464/93‑1 (MQ=255)
                                                                  cGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCa                         <  2:3683274/93‑1 (MQ=255)
                                                                  cGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCa                         >  1:1377128/1‑93 (MQ=255)
                                                                  cGCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCa                         <  1:6185624/93‑1 (MQ=255)
                                                                   gCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCaa                        >  1:7177155/1‑93 (MQ=255)
                                                                   gCTTTTGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCaa                        >  2:5781171/1‑93 (MQ=255)
                                                                     ttttGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCAAGt                      <  2:1585518/93‑1 (MQ=255)
                                                                     ttttGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCAAGt                      <  1:6936336/93‑1 (MQ=255)
                                                                      tttGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCAAGtt                     <  1:2331483/93‑1 (MQ=255)
                                                                        tGAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCAAGTTGc                   <  1:396405/93‑1 (MQ=255)
                                                                         gAAAAACTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCAAGTTGCg                  <  1:5522411/93‑1 (MQ=255)
                                                                            aaaCTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCAAGTTGCGTGa               >  2:2531958/1‑93 (MQ=255)
                                                                            aaaCTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCAAGTTGCGTGa               <  1:761332/93‑1 (MQ=255)
                                                                            aaaCTTCCTGTTTCAGCAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCAAGTTGCGTGa               <  2:2747283/93‑1 (MQ=255)
                                                                              aCTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCAAGTTGCGTGAtt             <  2:5936215/93‑1 (MQ=255)
                                                                              aCTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCAAGTTGCGTGAtt             <  2:4302114/93‑1 (MQ=255)
                                                                              aCTTCCTGTTTCAGCAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCAAGTTGCGTGAtt             <  1:1042133/93‑1 (MQ=255)
                                                                               cTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCAAGTTGCGTGAttt            >  2:6190134/1‑93 (MQ=255)
                                                                               cTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCAAGTTGCGTGAttt            <  1:2012876/93‑1 (MQ=255)
                                                                               cTTCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCAAGTTGCGTGAttt            >  2:2151164/1‑93 (MQ=255)
                                                                                ttCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCAAGTTGCGTGAtttt           <  1:5720031/93‑1 (MQ=255)
                                                                                 tCCTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCAAGTTGCGTGATTTTc          <  1:1139909/93‑1 (MQ=255)
                                                                                  ccTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCAAGTTGCGTGATTTTCt         <  1:682601/93‑1 (MQ=255)
                                                                                  ccTGTTTCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCAAGTTGCGTGATTTTCt         >  1:3282716/1‑93 (MQ=255)
                                                                                    tGTTTCAGCAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCAAGTTGCGTGATTTTCTTa       <  1:1081014/93‑1 (MQ=255)
                                                                                      tttCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCAAGTTGCGTGATTTTCTTATc     >  1:3769992/1‑93 (MQ=255)
                                                                                      tttCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCAAGTTGCGTGATTTTCTTATc     <  2:4808266/93‑1 (MQ=255)
                                                                                       ttCAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCAAGTTGCGTGATTTTCTTATcc    <  2:5147955/93‑1 (MQ=255)
                                                                                         cAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCAAGTTGCGTGATTTTCTTATCctc  <  2:2253500/93‑1 (MQ=255)
                                                                                         cAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCAAGTTGCGTGATTTTCTTATCctc  <  1:1798949/93‑1 (MQ=255)
                                                                                         cAGTAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCAAGTTGCGTGATTTTCTTATCctc  <  2:1438477/93‑1 (MQ=255)
                                                                                            |                                                                                         
GGTATTCTCTTCCAGAAGTTTAATGCGATAACTGATCGTCGCCGTGGTTTTACATAATCGTTCTGCCGCTTTTGAAAAACTTCCTGTTTCAGCAACCGCAATGAAAGTCCGCAAGGTTTCTGGATCGAACATCTTCAGGTATCCCCTTTTAAATCCGCAAGTTGCGTGATTTTCTTATCCTC  >  NC_000913/531314‑531495

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: