Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,001,421 2 bp→GC coding (381‑382/903 nt) rarD ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,001,4210CG99.8% 1753.8 / NA 458G128R (GGA→CGA) rarDhypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (0/1);  new base G (241/215);  total (241/217)
Fisher's exact test for biased strand distribution p-value = 4.73e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*NC_0009134,001,4220GC100.0% 1772.5 / NA 458D127E (GAC→GAG) rarDhypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base C (241/217);  total (241/217)

Only 100 of 480 total aligned reads displayed.

CGATAATAGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCCGTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTTCAC  >  NC_000913/4001331‑4001511
                                                                                          ||                                                                                         
 gATAATAGGTAGCGACCCAAAAGTCCCCAGCTGGACTAACACGCCACCTATCGCCAGAATCCCCGCCAGCCATTGCATCCGGCGGAATCGCTCGcc                                                                                      <  2:3870627/96‑1 (MQ=255)
  ataataGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCg                                                                                     >  1:9138515/1‑96 (MQ=255)
   taataGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGa                                                                                    >  2:8755932/1‑96 (MQ=255)
    aataGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAg                                                                                   <  2:14335175/96‑1 (MQ=255)
    aataGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAg                                                                                   >  2:934384/1‑96 (MQ=255)
    aataGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAg                                                                                   >  2:5278396/1‑96 (MQ=255)
     ataGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAgg                                                                                  >  1:3596686/1‑96 (MQ=255)
     ataGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAgg                                                                                  >  2:6638190/1‑96 (MQ=255)
     ataGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAgg                                                                                  <  2:6435142/96‑1 (MQ=255)
       aGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGaa                                                                                >  2:3628329/1‑96 (MQ=255)
         gTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGaaaa                                                                              <  2:11476895/96‑1 (MQ=255)
         gTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGaaaa                                                                              >  2:619368/1‑96 (MQ=255)
         gTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGaaaa                                                                              >  2:2525549/1‑96 (MQ=255)
          tAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAat                                                                             <  2:4842295/96‑1 (MQ=255)
          tAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAat                                                                             >  1:5754410/1‑96 (MQ=255)
          tAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAat                                                                             >  1:10827751/1‑96 (MQ=255)
           aGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAatc                                                                            >  2:13956819/1‑96 (MQ=255)
           aGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAatc                                                                            >  2:3175754/1‑96 (MQ=255)
            gCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAatca                                                                           <  1:3421774/96‑1 (MQ=255)
            gCGAACCAAAAGTCCACAGCTGAAATAAAACGCCTCATTTCGCCAGAATAACCGCCAGCAATTGCATCCGGCGGAATCGCTCGCCGAGGAAAatca                                                                           <  2:4715737/96‑1 (MQ=255)
              gacccAAAAGTCCCAAGCTGCACTAACACGCCAAATATCTCCAGAATCACCGCCAGCCCTTGCATCCGGCGGAATCGCTCGCCGAGGAAAatcatc                                                                         <  1:2826321/93‑1 (MQ=255)
              gAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAatcatc                                                                         >  1:9852233/1‑96 (MQ=255)
              gAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAatcatc                                                                         >  2:3371269/1‑96 (MQ=255)
                aCCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATccc                                                                       <  1:10229718/96‑1 (MQ=255)
                  cAAAAGCCCCCAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCa                                                                     <  1:1877672/96‑1 (MQ=255)
                     aaGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGca                                                                  >  2:5171840/1‑96 (MQ=255)
                      aGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGcac                                                                 <  1:6020904/96‑1 (MQ=255)
                      aGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGcac                                                                 <  1:8755932/96‑1 (MQ=255)
                       gTCCCCAGCTGGACTAACACGCCCCATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGcaca                                                                <  1:6411995/96‑1 (MQ=255)
                       gTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGcaca                                                                >  1:3293664/1‑96 (MQ=255)
                        tCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACaa                                                               >  2:916631/1‑96 (MQ=255)
                         ccACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAAt                                                              >  2:2378710/1‑96 (MQ=255)
                          cacaGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATg                                                             >  1:5450133/1‑96 (MQ=255)
                          cacaGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATg                                                             <  2:8875830/96‑1 (MQ=255)
                          cacaGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCAACCCCAGCACAATg                                                             >  1:7103771/1‑96 (MQ=255)
                          cacaGCTGGACTAACACGCCACATATCGCCAGAATCAACGCCAGCCATTGCATCCTGCGGAATCGCTCGCCGAGGAAAGTCATCCCCAGCACAATg                                                             >  1:3871294/1‑96 (MQ=255)
                           acaGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGt                                                            <  1:13926880/96‑1 (MQ=255)
                            caGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGtt                                                           >  1:3103247/1‑96 (MQ=255)
                             aGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTc                                                          >  2:12525161/1‑96 (MQ=255)
                              gCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCa                                                         >  1:8406966/1‑96 (MQ=255)
                               cTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCAc                                                        <  1:13313150/96‑1 (MQ=255)
                                tGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCAcc                                                       >  2:13593556/1‑96 (MQ=255)
                                   aCTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGc                                                    >  2:73914/1‑96 (MQ=255)
                                    cTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAgag                                                   <  1:10689447/96‑3 (MQ=255)
                                     tAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAACTCATCCCCACCACAATGTTCACGAGCgg                                                  >  2:1927925/1‑96 (MQ=255)
                                     tAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCgg                                                  >  1:6566157/1‑96 (MQ=255)
                                     tAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCgg                                                  >  1:4299528/1‑96 (MQ=255)
                                     tAACACGCCACATATCCCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCgg                                                  <  1:14171729/96‑1 (MQ=255)
                                     tAACACGCCACATATCACAAGACTCACCGCCAGCCACTGCCTCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCCCCAGCgg                                                  <  1:12437208/96‑1 (MQ=255)
                                      aaCACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCggg                                                 <  1:1465958/96‑1 (MQ=255)
                                      aaCACGCCACATATCGACAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCggg                                                 <  1:12794265/96‑1 (MQ=255)
                                       acacGCCACATATCGCCAGAATCACCGCCAGCCATTGAATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGt                                                >  1:10000107/1‑96 (MQ=255)
                                        cacGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGtt                                               >  2:13142793/1‑96 (MQ=255)
                                        cacGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGtt                                               <  2:12375240/96‑1 (MQ=255)
                                          cGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTtaa                                             <  2:794378/96‑1 (MQ=255)
                                           gCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTtaat                                            >  2:7657757/1‑96 (MQ=255)
                                           gCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTtaat                                            >  1:6193049/1‑96 (MQ=255)
                                            ccACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTtaata                                           >  1:1205069/1‑96 (MQ=255)
                                             cacaTATCGCCAGAATCCCCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTtaataa                                          <  2:2133666/96‑1 (MQ=255)
                                                atatCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGt                                       >  2:273777/1‑96 (MQ=255)
                                                 tatCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTa                                      <  2:156326/96‑1 (MQ=255)
                                                 tatCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTa                                      <  1:1591742/96‑1 (MQ=255)
                                                   tCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAAc                                    <  1:4170088/96‑1 (MQ=255)
                                                     gCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCa                                  >  1:2056248/1‑96 (MQ=255)
                                                     gCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGAAACCa                                  >  2:10233853/1‑96 (MQ=255)
                                                      ccAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAAccta                                 <  1:10516369/96‑3 (MQ=255)
                                                       cAGAATCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCaat                                <  1:11346075/96‑2 (MQ=255)
                                                          aaTCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCt                             <  2:5450133/96‑1 (MQ=255)
                                                          aaTCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCt                             <  1:1152374/96‑1 (MQ=255)
                                                           aTCACCTCCAGCCATTGCATCCGGCGGAATCCCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTc                            <  2:4197148/96‑1 (MQ=255)
                                                           aTCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTc                            >  2:7099456/1‑96 (MQ=255)
                                                           aTCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTc                            <  1:7512793/96‑1 (MQ=255)
                                                           aTCACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTc                            <  2:8494535/96‑1 (MQ=255)
                                                             cACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTcgc                          >  1:857684/1‑94 (MQ=255)
                                                             cACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTcgc                          >  1:7401329/1‑94 (MQ=255)
                                                             cACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTcgc                          <  1:5278396/96‑3 (MQ=255)
                                                             cACCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTcgc                          >  1:268203/1‑94 (MQ=255)
                                                              aCCGCCAGCCATTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTcgct                         >  1:9594138/1‑93 (MQ=255)
                                                                 gccagccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTcc                      >  2:3769878/1‑96 (MQ=255)
                                                                 gccagccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACAAAGGCTCGGTTcc                      >  1:4713490/1‑96 (MQ=255)
                                                                  ccagccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCa                     <  1:7737660/96‑1 (MQ=255)
                                                                  ccagccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCa                     <  2:9789900/96‑1 (MQ=255)
                                                                  ccagccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCa                     <  2:116580/96‑1 (MQ=255)
                                                                    agccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGc                   <  2:294029/96‑1 (MQ=255)
                                                                    agccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGc                   <  2:1062498/96‑1 (MQ=255)
                                                                    agccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGc                   >  2:10487463/1‑96 (MQ=255)
                                                                     gccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGGTAATAAAGTAACCAAGGCTCGCGTCCAGCa                  >  1:258580/1‑96 (MQ=255)
                                                                      ccaTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCATAATGTTCACCAGCGGGTTAATAAAGTAACCAAGTCTCGCCTCCAGCat                 >  2:9507721/1‑96 (MQ=255)
                                                                       caTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCata                >  1:8043636/1‑96 (MQ=255)
                                                                       caTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCata                >  2:8339408/1‑96 (MQ=255)
                                                                        aTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCatat               <  1:12569093/96‑1 (MQ=255)
                                                                        aTTGCATCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCatat               <  1:13605256/96‑1 (MQ=255)
                                                                              tCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAt         <  1:7917492/96‑1 (MQ=255)
                                                                              tCCGGCGGAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGAt         >  2:1208278/1‑96 (MQ=255)
                                                                                cggcggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTTATTg       >  2:5788381/1‑96 (MQ=255)
                                                                                  gcggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGtt     >  1:6891130/1‑96 (MQ=255)
                                                                                   cggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTc    >  2:10941323/1‑96 (MQ=255)
                                                                                    ggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCa   <  1:2409453/96‑1 (MQ=255)
                                                                                    ggAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGGAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCa   >  1:489864/1‑96 (MQ=255)
                                                                                     gAATCGCTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCGCTTCCAGCATATGGTGATTGTTCAc  >  2:11048558/1‑96 (MQ=255)
                                                                                          ||                                                                                         
CGATAATAGGTAGCGAACCAAAAGTCCACAGCTGGACTAACACGCCACATATCGCCAGAATCACCGCCAGCCATTGCATCCGGCGGAATCCGTCGCCGAGGAAAATCATCCCCAGCACAATGTTCACCAGCGGGTTAATAAAGTAACCAAGGCTCCGTTCCAGCATATGGTGATTGTTCAC  >  NC_000913/4001331‑4001511

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑