BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,389,812	Δ1 bp	intergenic (‑149/+4151)	tldD ← / ← cafA	TldD/CafA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,389,811	0	C	.	100.0%	481.6 / NA	139	intergenic (‑148/+4152)	tldD/cafA	TldD/CafA
Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (73/66); total (73/66)

Only 100 of 167 total aligned reads displayed.

CGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAAC  >  NC_000913/3389719‑3389890

cggcgTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGc                                                                                 <  2:3999768/93‑1 (MQ=255)

 ggcgTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGcg                                                                                <  1:4518954/93‑2 (MQ=255)

  gcgTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGcgg                                                                               >  2:6982858/1‑91 (MQ=255)

  gcgTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGcgg                                                                               >  2:4874510/1‑91 (MQ=255)

   cgTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGcggc                                                                              <  1:7561843/93‑4 (MQ=255)

   cgTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGcggc                                                                              <  1:6583212/93‑4 (MQ=255)

   cgTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGcggc                                                                              <  1:5884441/93‑4 (MQ=255)

   cgTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGcggc                                                                              <  2:2596246/93‑4 (MQ=255)

   cgTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGcggc                                                                              <  2:3028023/93‑4 (MQ=255)

   cgTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGcggc                                                                              <  2:5437693/93‑4 (MQ=255)

    gTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGGCGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGcggcg                                                                             >  2:547387/1‑89 (MQ=255)

    gTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGcggcg                                                                             >  2:4808993/1‑89 (MQ=255)

    gTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGcggcg                                                                             >  1:4160770/1‑89 (MQ=255)

    gTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGcggcg                                                                             >  1:5612753/1‑89 (MQ=255)

     tGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTATGCCTGATAAGACGCACAGCGTCGCATCAGGCAACCGCTGTCGCATCCCgcgt                                                                            >  1:7081810/1‑90 (MQ=18)

     tGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGt                                                                           >  1:2806357/1‑93 (MQ=255)

     tGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGt                                                                           >  1:2830547/1‑93 (MQ=255)

     tGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGt                                                                           >  1:4117632/1‑93 (MQ=255)

       aaCGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTaa                                                                         >  1:1396973/1‑93 (MQ=255)

       aaCGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTaa                                                                         <  1:4717417/93‑1 (MQ=255)

       aaCGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTaa                                                                         <  2:2968695/93‑1 (MQ=255)

        aCGCCCTATCCAGCCTCCGGTTATGTTCCGGTTTGTAGGCCTGATAAGCCGCACAGCGTCGCATCAGCCAACGGCTGTCGGATG‑CGGCGTaaa                                                                        <  1:6821518/93‑1 (MQ=14)

        aCGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTaaa                                                                        <  2:61766/93‑1 (MQ=255)

        aCGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTaaa                                                                        <  2:7292550/93‑1 (MQ=255)

         cccccTATCCAGCGTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGAACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAAc                                                                       <  2:1691963/91‑1 (MQ=14)

         cGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAAc                                                                       <  1:4245518/93‑1 (MQ=255)

         cGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAAc                                                                       <  1:1506151/93‑1 (MQ=255)

         cGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAAc                                                                       <  1:4527602/93‑1 (MQ=255)

         cGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAAc                                                                       >  1:1790892/1‑93 (MQ=255)

         cGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAAc                                                                       <  1:4643813/93‑1 (MQ=255)

         cGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAAc                                                                       >  2:2107822/1‑93 (MQ=255)

         cGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTCTCGGATG‑CGGCGTAAAc                                                                       >  1:6786445/1‑93 (MQ=255)

           cccTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGc                                                                     >  1:2357152/1‑93 (MQ=255)

           cccTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGc                                                                     >  2:7344/1‑93 (MQ=255)

           cccTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGc                                                                     >  2:4155240/1‑93 (MQ=255)

           cccTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGGAAACGc                                                                     >  1:6436316/1‑93 (MQ=255)

            ccTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGcc                                                                    <  1:3106950/93‑1 (MQ=255)

             cTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCt                                                                   <  1:5270609/93‑1 (MQ=255)

              taaccAGCCTACGGTTTTGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAATCGCCtt                                                                  >  2:7043724/4‑93 (MQ=14)

              tATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTTATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGTC‑GTGTAAACGCGtt                                                                  >  1:2457331/1‑93 (MQ=14)

              tATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCtt                                                                  >  1:4909398/1‑93 (MQ=255)

              tATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCtt                                                                  >  1:5835106/1‑93 (MQ=255)

              tATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCtt                                                                  >  2:2870242/1‑93 (MQ=255)

              tATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCtt                                                                  >  2:3776085/1‑93 (MQ=255)

              tATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCtt                                                                  <  1:2549844/93‑1 (MQ=255)

              tATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCAGATG‑CGGAGTAAACGCAtt                                                                  >  1:234250/1‑93 (MQ=14)

               attcAGCCTACGGTTATGTTTCGGTTTGTAGGCCTGATTAGACGCACAGCGTCGCATCTGGCAACGGCTGTCGGATG‑CGGCGGATACGCCCTa                                                                 >  1:6995074/4‑93 (MQ=14)

               aTCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTa                                                                 >  2:6865978/1‑93 (MQ=255)

               aTCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTa                                                                 >  2:5573933/1‑93 (MQ=255)

               aTCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTa                                                                 <  1:1020971/93‑1 (MQ=255)

               aTCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTa                                                                 <  1:5761445/93‑1 (MQ=255)

               aTCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTa                                                                 >  1:6658722/1‑93 (MQ=255)

                tCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTAt                                                                <  1:2130587/93‑1 (MQ=255)

                tCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTAt                                                                <  1:3911884/93‑1 (MQ=255)

                tCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTAt                                                                >  2:2834063/1‑93 (MQ=255)

                tCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTAt                                                                <  1:1181918/93‑1 (MQ=255)

                 ccAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATc                                                               <  2:1972007/93‑1 (MQ=255)

                 ccAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATc                                                               <  1:974183/93‑1 (MQ=255)

                  cAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑GGGCGTAAACGCCTTATcc                                                              >  2:2784514/1‑93 (MQ=255)

                  cAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATcc                                                              <  2:2397037/93‑1 (MQ=255)

                  cAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATcc                                                              <  1:5353010/93‑1 (MQ=255)

                  cAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCCTATcc                                                              >  2:4270299/1‑93 (MQ=255)

                   aGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCg                                                             >  2:1946961/1‑93 (MQ=255)

                   aGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCg                                                             >  1:50852/1‑93 (MQ=255)

                   aGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCg                                                             >  2:6846270/1‑93 (MQ=255)

                    gCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGa                                                            >  1:900419/1‑93 (MQ=255)

                    gCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGa                                                            <  1:160214/93‑1 (MQ=255)

                     ccTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGAc                                                           <  1:5481355/93‑1 (MQ=19)

                     ccTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGAc                                                           >  2:3856806/1‑93 (MQ=19)

                      cTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGAcc                                                          <  2:1431543/93‑1 (MQ=255)

                      cTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGAcc                                                          >  1:2502546/1‑93 (MQ=19)

                       tACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCt                                                         >  1:4620863/1‑93 (MQ=19)

                       tACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCt                                                         >  1:7859561/1‑93 (MQ=19)

                       tACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCt                                                         >  2:4672680/1‑93 (MQ=19)

                        aCGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTa                                                        <  2:7766854/93‑1 (MQ=255)

                        aCGGTTATGTTCCGGTTTGTAGGCCTGAGAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTa                                                        <  2:7424251/93‑1 (MQ=255)

                          ggTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACg                                                      <  2:6886152/93‑1 (MQ=19)

                           gTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACgg                                                     >  2:3688352/1‑93 (MQ=19)

                           gTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACgg                                                     >  2:4411559/1‑93 (MQ=19)

                           gTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACgg                                                     >  2:1559589/1‑93 (MQ=19)

                            ttATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGt                                                    >  1:7221163/1‑93 (MQ=19)

                            ttATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGt                                                    <  2:2685608/93‑1 (MQ=19)

                            ttATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGt                                                    >  1:7646561/1‑93 (MQ=19)

                             tATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGtt                                                   >  1:2792393/1‑93 (MQ=19)

                             tATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGtt                                                   <  2:6487983/93‑1 (MQ=19)

                             tATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCCGATG‑CGGCGTAAACGCCTTATCCGACCTACGGtt                                                   >  2:5311827/1‑93 (MQ=255)

                              aTGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGttt                                                  >  1:1045863/1‑92 (MQ=255)

                              aTGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGTTa                                                  <  2:2589719/93‑1 (MQ=19)

                              aTGTGCCGGTTTGTAGACCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGTTa                                                  <  2:5043673/93‑1 (MQ=11)

                               tGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGTTAt                                                 >  1:7758614/1‑93 (MQ=19)

                               tGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGTTAt                                                 <  1:641540/93‑1 (MQ=19)

                               tGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGTTAt                                                 <  1:6161271/93‑1 (MQ=19)

                                gTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGTTATg                                                >  2:3420144/1‑93 (MQ=19)

                                gTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGTTATg                                                <  1:4167732/93‑1 (MQ=19)

                                 ttCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGTTATGt                                               <  2:2300676/93‑1 (MQ=16)

                                 ttCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGTTATGt                                               >  2:6964045/1‑93 (MQ=16)

                                 ttCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGTTATGt                                               <  1:1465151/93‑1 (MQ=16)

                                  tCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGCCCTACGTTTATGtt                                              >  2:6382618/1‑93 (MQ=11)

                                  tCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGTTATGtt                                              <  1:3545439/93‑1 (MQ=12)

                                    cGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGTTATGTTcc                                            >  2:2208420/1‑93 (MQ=0)

CGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAAC  >  NC_000913/3389719‑3389890

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`