BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	959,388	(T)_8→7	intergenic (+70/‑75)	aroA → / → ycaL	5‑enolpyruvylshikimate‑3‑phosphate synthetase/putative heat shock protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	959,381	0	T	.	100.0%	610.0 / NA	136	intergenic (+63/‑82)	aroA/ycaL	5‑enolpyruvylshikimate‑3‑phosphate synthetase/putative heat shock protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (43/93); total (43/93)

Only 100 of 150 total aligned reads displayed.

GCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTA  >  NC_000913/959291‑959469

  tGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGttttt                                                                                      <  1:1654344/93‑1 (MQ=255)

   ggCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGtttttt                                                                                     <  1:1267915/93‑1 (MQ=255)

    gcgcGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGttttttt                                                                                    <  2:383916/93‑1 (MQ=255)

    gcgcGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGttttttt                                                                                    <  2:2576870/93‑1 (MQ=255)

     cgtggATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGtttttttc                                                                                   <  1:6143697/90‑2 (MQ=255)

        ggATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGtttttttcgga                                                                                >  1:4805820/1‑89 (MQ=255)

        ggATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGtttttttcgga                                                                                <  2:4501092/93‑5 (MQ=255)

        ggATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGtttttttcgga                                                                                <  1:2528768/93‑5 (MQ=255)

         gATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGAc                                                                              >  2:5388711/1‑93 (MQ=255)

         gATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGAc                                                                              >  2:7762488/1‑93 (MQ=255)

           ttAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCt                                                                            <  1:5717053/93‑1 (MQ=255)

             aGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTtg                                                                          <  2:212388/93‑1 (MQ=255)

                cAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGa                                                                       >  2:2733692/1‑93 (MQ=255)

                cAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGa                                                                       >  1:5667523/1‑93 (MQ=255)

                 aGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAg                                                                      <  1:6857063/93‑1 (MQ=255)

                 aGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAg                                                                      <  2:6023024/93‑1 (MQ=255)

                  ggCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGt                                                                     >  2:1229859/1‑93 (MQ=255)

                      gCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCAtt                                                                 <  1:6177471/93‑1 (MQ=255)

                       ccTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCAttt                                                                <  1:583597/93‑1 (MQ=255)

                       ccTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCAttt                                                                >  1:4747909/1‑93 (MQ=255)

                         tgaatgaaCAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTg                                                              >  1:5870857/1‑93 (MQ=255)

                          gaatgaaCAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGa                                                             <  1:1095476/93‑1 (MQ=255)

                           aatgaaCAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGAt                                                            >  1:7294505/1‑93 (MQ=255)

                           aatgaaCAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGAt                                                            <  1:1962898/93‑1 (MQ=255)

                             tgaaCAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTa                                                          >  2:4037967/1‑93 (MQ=255)

                              gaaCAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTaa                                                         <  2:2849102/93‑1 (MQ=255)

                              gaaCAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTaa                                                         <  1:3496536/93‑1 (MQ=255)

                               aacaacGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAAt                                                        >  1:3027212/1‑93 (MQ=255)

                               aacaacGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAAt                                                        >  1:3027211/1‑93 (MQ=255)

                                  aacGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGt                                                     >  2:6500544/1‑93 (MQ=255)

                                   acGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTa                                                    <  2:5903933/93‑1 (MQ=255)

                                    cGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAg                                                   <  1:7804854/93‑1 (MQ=255)

                                    cGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAg                                                   <  1:2650426/93‑1 (MQ=255)

                                     gggCAATAAATGGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATTGTAGc                                                  >  2:4568949/1‑93 (MQ=255)

                                      ggCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCg                                                 <  2:3135463/93‑1 (MQ=255)

                                      ggCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCg                                                 <  2:3485773/93‑1 (MQ=255)

                                         aataaataGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCg                                              >  2:2688510/1‑93 (MQ=255)

                                          ataaataGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGc                                             >  1:505836/1‑93 (MQ=255)

                                          ataaataGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGc                                             >  1:6839950/1‑93 (MQ=255)

                                            aaataGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCtt                                           <  2:7718968/93‑1 (MQ=255)

                                               taGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTc                                        <  1:668250/93‑1 (MQ=255)

                                               taGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTc                                        >  2:5569446/1‑93 (MQ=255)

                                               taGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTc                                        >  2:1508701/1‑93 (MQ=255)

                                                 gCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCaa                                      <  1:4679514/93‑1 (MQ=255)

                                                 gCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCaa                                      <  1:5451074/93‑1 (MQ=255)

                                                 gCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCaa                                      <  1:453385/93‑1 (MQ=255)

                                                 gCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCaa                                      <  1:190252/93‑1 (MQ=255)

                                                  ccAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAAt                                     <  1:1249152/93‑1 (MQ=255)

                                                  ccAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAAt                                     <  2:7290882/93‑1 (MQ=255)

                                                   cAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATg                                    <  2:561120/93‑1 (MQ=255)

                                                   cAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATg                                    >  2:7011796/1‑93 (MQ=255)

                                                   cAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATg                                    <  1:1332058/93‑1 (MQ=255)

                                                   cAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATg                                    <  1:1332059/93‑1 (MQ=255)

                                                    aaaTCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGt                                   <  1:188289/93‑1 (MQ=255)

                                                    aaaTCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGt                                   <  2:2994598/93‑1 (MQ=255)

                                                     aaTCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTa                                  >  1:4805011/1‑93 (MQ=255)

                                                     aaTCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTa                                  <  1:7495365/93‑1 (MQ=255)

                                                      aTCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTaa                                 <  1:4519981/93‑1 (MQ=255)

                                                      aTCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTaa                                 <  1:2099523/93‑1 (MQ=255)

                                                      aTCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTaa                                 >  1:14417/1‑93 (MQ=255)

                                                       tctttcttTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAg                                <  1:4172174/93‑1 (MQ=255)

                                                       tctttcttTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAg                                <  1:5059417/93‑1 (MQ=255)

                                                       tctttcttTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAg                                >  2:3214951/1‑93 (MQ=255)

                                                       tctttcttTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAg                                <  1:964911/93‑1 (MQ=255)

                                                          ttctttATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgttg                             <  2:1028419/93‑1 (MQ=255)

                                                            ctttATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgttgtt                           <  2:5829721/93‑1 (MQ=255)

                                                            ctttATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgttgtt                           >  2:7436149/1‑93 (MQ=255)

                                                            ctttATCAAAACGTCGGCACATTGCCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgttgtt                           <  2:711523/93‑1 (MQ=255)

                                                             tttATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGttgttg                          <  2:1626964/93‑1 (MQ=255)

                                                              ttATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGa                         <  2:5387191/93‑1 (MQ=255)

                                                              ttATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGa                         <  2:4451246/93‑1 (MQ=255)

                                                                aTCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATa                       <  2:7337044/93‑1 (MQ=255)

                                                                aTCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATa                       <  1:3949246/93‑1 (MQ=255)

                                                                aTCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATa                       <  1:2679305/93‑1 (MQ=255)

                                                                  cAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACa                     <  1:823082/93‑1 (MQ=255)

                                                                  cAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACa                     <  1:2310283/93‑1 (MQ=255)

                                                                  cAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACa                     <  1:6977790/93‑1 (MQ=255)

                                                                  cAAAACGGCGGCACATTGTAGGC‑TGTTTTTGCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCCCTTGTCAATGTAAGTTGTTGATACa                     <  1:823084/93‑1 (MQ=255)

                                                                   aaaaCGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGCTGTTGATACat                    >  2:7506351/1‑93 (MQ=255)

                                                                    aaaCGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACata                   >  2:7107387/1‑93 (MQ=255)

                                                                       cGTCGGCTCATTGTCGGCG‑TGTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACataata                <  2:6413380/93‑1 (MQ=255)

                                                                       cGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACataata                >  2:2568067/1‑93 (MQ=255)

                                                                       cGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACataata                <  1:1738978/93‑1 (MQ=255)

                                                                       cGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACataata                <  2:6413381/93‑1 (MQ=255)

                                                                        gTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAatat               >  2:4908056/1‑93 (MQ=255)

                                                                         tCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATAtt              <  2:2008406/93‑1 (MQ=255)

                                                                          cGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATAttt             <  1:3724156/93‑1 (MQ=255)

                                                                           ggCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTta            <  1:4057539/93‑1 (MQ=255)

                                                                           ggCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTta            <  2:5229588/93‑1 (MQ=255)

                                                                           ggCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTta            <  1:4157607/93‑1 (MQ=255)

                                                                           ggCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTta            <  1:1448091/93‑1 (MQ=255)

                                                                           ggCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGATTGTCAATGTAAGTTGTTGATACATAATATTta            >  1:1095751/1‑93 (MQ=255)

                                                                             cacaTTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTtata          >  2:1662015/1‑93 (MQ=255)

                                                                              acaTTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTtatat         >  1:7203028/1‑93 (MQ=255)

                                                                                aTTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTatatat       >  2:2285085/1‑93 (MQ=255)

                                                                                aTTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTatatat       <  1:5456964/93‑1 (MQ=255)

                                                                                 ttGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATg      <  2:2429263/93‑1 (MQ=255)

                                                                                  tGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGa     <  1:7762489/93‑1 (MQ=255)

                                                                                    tCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGAtt   >  1:652870/1‑93 (MQ=255)

                                                                                     cGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTa  <  2:3387345/93‑1 (MQ=255)

GCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGATTA  >  NC_000913/959291‑959469

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`