BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,212,032	Δ1 bp	coding (299/405 nt)	ycgX ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,212,029	0	A	.	99.4%	767.7 / ‑2.8	171	coding (302/405 nt)	ycgX	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/1); new base . (68/102); total (68/103)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.24e-01

Only 100 of 190 total aligned reads displayed.

GTTTATTATTTTCTACATCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGAAAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCTTTTATTTTAG  >  NC_000913/1211937‑1212116

gTTTATTATTTTCTACATCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGa                                                                                         <  1:899180/93‑1 (MQ=255)

  ttattaTTTTCTACATCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGaaa                                                                                       <  2:5115470/93‑1 (MQ=255)

  ttattaTTTTCTACATCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGaaa                                                                                       <  1:2393986/93‑1 (MQ=255)

  ttattaTTTTCTACATCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGaaa                                                                                       >  2:3064830/1‑93 (MQ=255)

    attattTTCTACATCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGaaacg                                                                                     <  1:7875063/93‑3 (MQ=255)

          ttCTACATCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCcgcg                                                                              >  1:4116578/1‑93 (MQ=255)

              aCATCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTg                                                                          >  2:5801951/1‑93 (MQ=255)

                aTCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGcc                                                                        >  1:3138723/1‑93 (MQ=255)

                 tCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCa                                                                       <  2:3986170/93‑1 (MQ=255)

                 tCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCa                                                                       >  2:1031951/1‑93 (MQ=255)

                  cTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAg                                                                      <  1:5410753/93‑1 (MQ=255)

                   ttCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAgt                                                                     <  1:2339649/93‑1 (MQ=255)

                    tCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAgtg                                                                    <  1:4594669/93‑1 (MQ=255)

                     cAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAgtgt                                                                   <  1:1045576/93‑1 (MQ=255)

                     cAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAgtgt                                                                   >  2:1517163/1‑93 (MQ=255)

                     cAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAgtgt                                                                   <  2:2552900/93‑1 (MQ=255)

                     cAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAgtgt                                                                   <  1:1164844/93‑1 (MQ=255)

                      aaTATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGtt                                                                  >  2:5213199/1‑93 (MQ=255)

                       atatatAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTg                                                                 >  2:5463177/1‑93 (MQ=255)

                         atataAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGaa                                                               <  2:1489225/93‑1 (MQ=255)

                          tataAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAAc                                                              <  2:3807016/93‑1 (MQ=255)

                          tataAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAAc                                                              >  1:7600597/1‑93 (MQ=255)

                          tataAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAAc                                                              >  1:745819/1‑93 (MQ=255)

                          tataAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAAc                                                              <  2:5557903/93‑1 (MQ=255)

                          tataAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTCATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAAc                                                              <  1:491518/93‑1 (MQ=255)

                           ataAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACa                                                             <  2:3538170/93‑1 (MQ=255)

                           ataAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACa                                                             <  2:7683244/93‑1 (MQ=255)

                           ataAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACa                                                             <  1:4674714/93‑1 (MQ=255)

                             aaaaGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGt                                                           >  2:6298678/1‑93 (MQ=255)

                              aaaGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTa                                                          <  1:1599912/93‑1 (MQ=255)

                               aaGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTAt                                                         <  1:6054375/93‑1 (MQ=255)

                                aGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTAtt                                                        >  1:2363079/1‑93 (MQ=255)

                                aGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTAtt                                                        >  2:4682586/1‑93 (MQ=255)

                                aGCGTATTATAAATGGCGTAGTAACTGGGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTAtt                                                        <  1:6238601/93‑1 (MQ=255)

                                   gTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTccc                                                     <  1:3039096/93‑1 (MQ=255)

                                   gTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTccc                                                     <  1:4087379/93‑1 (MQ=255)

                                    tattatCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCg                                                    >  2:4878604/1‑93 (MQ=255)

                                      ttatCAATGGCGTAGTAACTGCGTTTGTTATGCTTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGATCAGTATTCCCGaa                                                  >  1:5030152/1‑93 (MQ=255)

                                      ttatCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGaa                                                  >  2:6453605/1‑93 (MQ=255)

                                      ttatCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGaa                                                  >  1:5030151/1‑93 (MQ=255)

                                        atCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAAt                                                <  2:1471519/93‑1 (MQ=255)

                                        accAATGGCGTAGTAGCTGCGTTTGTTATGATTAACATCAGTAACCCGCCGG‑AAACGCCCTCGCCTGCCAGTGTTGAACAGTATTCCCGAAAt                                                <  1:3738195/91‑1 (MQ=255)

                                         tCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATg                                               >  1:108469/1‑93 (MQ=255)

                                         tCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATg                                               >  1:7175801/1‑93 (MQ=255)

                                         tCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATg                                               >  2:2998674/1‑93 (MQ=255)

                                         tCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATg                                               >  1:5319027/1‑93 (MQ=255)

                                            aTGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAg                                            <  1:6946245/93‑1 (MQ=255)

                                            aTGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAg                                            <  1:6085207/93‑1 (MQ=255)

                                            aTGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAg                                            <  1:1453104/93‑1 (MQ=255)

                                             tGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGa                                           <  1:2996832/93‑1 (MQ=255)

                                             tGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGa                                           >  2:4232988/1‑93 (MQ=255)

                                              ggCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGAt                                          <  1:4809823/93‑1 (MQ=255)

                                              ggCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGAt                                          <  1:6886012/93‑1 (MQ=255)

                                               gCGTATTAACTGCTTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGAtt                                         <  2:2796941/93‑1 (MQ=255)

                                               gCGTAGTAACTGCTTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGAtt                                         <  1:388588/93‑1 (MQ=255)

                                                 gtagtaACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAATGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGAtttt                                       >  1:5859905/1‑93 (MQ=255)

                                                 gtagtaACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGAtttt                                       >  2:4530818/1‑93 (MQ=255)

                                                 gtagtaACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGAtttt                                       >  2:4924935/1‑93 (MQ=255)

                                                  tagtaACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTc                                      >  2:3309968/1‑93 (MQ=255)

                                                   agtaACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTcc                                     <  2:5388369/93‑1 (MQ=255)

                                                    gtaACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCg                                    <  1:3962261/93‑1 (MQ=255)

                                                       aCTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCaa                                 >  1:2498778/1‑93 (MQ=255)

                                                        cTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCaaa                                <  2:1986518/93‑1 (MQ=255)

                                                          gCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAata                              <  2:7443879/93‑1 (MQ=255)

                                                            gTTTGTTATGATTAACATCAGTAACCCCCCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATg                            >  1:686243/1‑93 (MQ=255)

                                                            gTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATg                            >  1:2223897/1‑93 (MQ=255)

                                                             tttGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAatataa                           >  1:6144509/1‑91 (MQ=255)

                                                             tttGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGa                           <  1:7559176/93‑1 (MQ=255)

                                                               tGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAg                         >  2:6683823/1‑93 (MQ=255)

                                                                tttATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGc                        <  2:4989021/92‑1 (MQ=255)

                                                                gTTATGATTAACATCAGTAGCCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGc                        <  2:1094558/93‑1 (MQ=255)

                                                                gTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAga                        >  1:1516836/1‑92 (MQ=255)

                                                                gTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGc                        <  1:5801952/93‑1 (MQ=255)

                                                                gTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGc                        >  2:6299040/1‑93 (MQ=255)

                                                                 ttATGATTAACATCAGTAACCCACCGGAAAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGc                        <  1:4294090/93‑1 (MQ=255)

                                                                  tATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCaa                      <  1:64358/93‑1 (MQ=255)

                                                                  tATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCaa                      <  2:6450521/93‑1 (MQ=255)

                                                                  tATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCaa                      <  1:4686127/93‑1 (MQ=255)

                                                                   aTGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAAt                     <  2:5097782/93‑1 (MQ=255)

                                                                   aTGATTAACATCAGTAACCCACCGG‑AAACGCCCGCACCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAAt                     <  2:3414806/93‑1 (MQ=255)

                                                                    tGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATg                    >  1:5979540/1‑93 (MQ=255)

                                                                    tGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATg                    >  2:1399558/1‑93 (MQ=255)

                                                                     gATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGc                   >  1:1769599/1‑93 (MQ=255)

                                                                      aTTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCg                  <  2:3989172/93‑1 (MQ=255)

                                                                       ttAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCgg                 <  1:7701271/93‑1 (MQ=255)

                                                                          aCATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCct              >  1:6350255/1‑93 (MQ=255)

                                                                            aTCAGTAACCCAGCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCctct            <  2:2137352/93‑1 (MQ=255)

                                                                             tCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAGCAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCtt           >  1:2550098/1‑93 (MQ=255)

                                                                             tCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCtt           <  2:4722979/93‑1 (MQ=255)

                                                                             tCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCtt           <  1:3538075/93‑1 (MQ=255)

                                                                               aGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCtttt         >  1:7615727/1‑93 (MQ=255)

                                                                                gTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCtttta        <  1:5565259/93‑1 (MQ=255)

                                                                                gTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCtttta        <  2:71744/93‑1 (MQ=255)

                                                                                 tAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCttttat       <  2:3138607/93‑1 (MQ=255)

                                                                                  aaCCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTTCGCAAATATGAAGCAATGCGGCCTCttttatt      >  1:1363792/1‑93 (MQ=255)

                                                                                   aCCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCttttattt     <  2:7322043/93‑1 (MQ=255)

                                                                                     ccACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCttttatttta   <  2:1708803/93‑1 (MQ=255)

                                                                                     ccACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCttttatttta   <  1:3769947/93‑1 (MQ=255)

                                                                                      cACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCTTTTATTTTAg  >  1:7798169/1‑93 (MQ=255)

                                                                                      cACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAAGGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCTTTTATTTTAg  >  2:7546323/1‑93 (MQ=255)

GTTTATTATTTTCTACATCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGAAAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCTTTTATTTTAG  >  NC_000913/1211937‑1212116

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`