BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,483,335	(C)_6→5	coding (942/3594 nt)	evgS →	EvgS

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,483,330	0	C	.	99.5%	913.1 / ‑4.3	203	coding (937/3594 nt)	evgS	EvgS
Reads supporting (aligned to +/- strand): ref base C (0/1); new base . (107/95); total (107/96)
Fisher's exact test for biased strand distribution p-value = 4.73e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 230 total aligned reads displayed.

CCTTTCTGAACAAACCATTAGAACTCACTGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCGCCCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAATATTATTACCTTGCAAACAGGTTTAAA  >  NC_000913/2483238‑2483418

 cTTTCTGAACAAACCATTAGAACTCACTGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCGcc                                                                                         >  2:5046361/1‑93 (MQ=255)

 cTTTCTGAACAAACCATTAGAACTCACTGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCGcc                                                                                         >  2:28543/1‑93 (MQ=255)

  tttCTGAACAAACCATTAGAACTCACTGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCGccc                                                                                        >  1:7838851/1‑93 (MQ=255)

  tttCTGAACAAACCATTAGAACTCACTGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCGccc                                                                                        >  1:3407434/1‑93 (MQ=255)

  tttCTGAACAAACCATTAGAACTCACTGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCGccc                                                                                        >  2:576424/1‑93 (MQ=255)

   ttCTGAACAAACCATTAGAACTCACTGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCGcccc                                                                                       >  2:5354828/1‑93 (MQ=255)

     cTGAACAAACCATTAGAACTCACTGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCGccccct                                                                                     <  1:5139727/93‑2 (MQ=255)

      tGAACAAACCATTAGAACTCACTGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCGcccccta                                                                                    >  1:6154734/1‑91 (MQ=255)

      tGAACAAACCATTAGAACTCACTGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCGcccccta                                                                                    >  2:4252437/1‑91 (MQ=255)

       gaacgaacCATTAGAACTCACTGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCGccccctat                                                                                   >  2:5203498/1‑90 (MQ=255)

       gAACAAACCATTAGAACTCACTGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCGccccctat                                                                                   >  1:1240735/1‑90 (MQ=255)

        aaCAAACCATTAGAACTCACTGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCGccccctatt                                                                                  <  1:4877842/93‑5 (MQ=255)

           aaaCCATTAGAACTCACTGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTa                                                                              >  1:1972533/1‑93 (MQ=255)

            aaCCATTAGAACTCACTGAACATGAAAAACAGTGGATTAATCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTAt                                                                             >  1:4327817/1‑93 (MQ=255)

            aaCCATTAGAACTCACTGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAACATCCTTACTCG‑CCCCCTATTCTAt                                                                             >  2:636384/1‑93 (MQ=255)

            aaCCATTAGAACTCACTGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTAt                                                                             <  2:6767618/93‑1 (MQ=255)

            aaCCATTAGAACTCACTGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTAt                                                                             >  2:2232134/1‑93 (MQ=255)

             aCCATTAGAACTCACTGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATg                                                                            >  1:583746/1‑93 (MQ=255)

                 ttAGAACTCACTGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACgg                                                                        >  2:2318377/1‑93 (MQ=255)

                 ttAGAACTCACTGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACgg                                                                        >  1:2256328/1‑93 (MQ=255)

                   aGAACTCACTGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGAt                                                                      >  2:3804721/1‑93 (MQ=255)

                    gAACTCACTGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATg                                                                     >  1:3976840/1‑93 (MQ=255)

                       cTCACTGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGaaa                                                                  >  2:5961429/1‑93 (MQ=255)

                        tCACTGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGaaaa                                                                 >  1:6212996/1‑93 (MQ=255)

                         cACTGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAAt                                                                <  2:482783/93‑1 (MQ=255)

                         cACTGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAAt                                                                <  2:6991962/93‑1 (MQ=255)

                          aCTGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATg                                                               >  2:7049564/1‑93 (MQ=255)

                           cTGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGTTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATgg                                                              <  1:1630505/93‑1 (MQ=255)

                            tGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGc                                                             <  1:4340944/93‑1 (MQ=255)

                             gAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCt                                                            <  1:6258737/93‑1 (MQ=255)

                              aaCATGAAAANCAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTc                                                           <  2:864777/93‑1 (MQ=255)

                              aaCATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTc                                                           >  2:921149/1‑93 (MQ=255)

                              aaCATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTc                                                           <  1:3528640/93‑1 (MQ=255)

                               aCATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCg                                                          >  2:1714202/1‑93 (MQ=255)

                                 aTGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGt                                                        >  1:6319256/1‑93 (MQ=255)

                                  tGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGtt                                                       >  2:412086/1‑93 (MQ=255)

                                  tGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGtt                                                       >  2:7879484/1‑93 (MQ=255)

                                  tGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGtt                                                       <  1:6384503/93‑1 (MQ=255)

                                   gAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTc                                                      >  2:2460915/1‑93 (MQ=255)

                                    aaaaaCAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCg                                                     >  1:1442452/1‑93 (MQ=255)

                                       aaCAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCgggg                                                  <  2:3538624/93‑1 (MQ=255)

                                        aCAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGc                                                 >  1:5733087/1‑93 (MQ=255)

                                        aCAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGc                                                 >  1:2424494/1‑93 (MQ=255)

                                        aCAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGc                                                 >  1:1471754/1‑93 (MQ=255)

                                          aGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGt                                               >  2:3994659/1‑93 (MQ=255)

                                          aGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGt                                               >  2:5685783/1‑93 (MQ=255)

                                           gTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGtt                                              <  1:460212/93‑1 (MQ=255)

                                           gTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCACCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGtt                                              >  1:7568906/1‑93 (MQ=255)

                                            tGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTa                                             <  2:239315/93‑1 (MQ=255)

                                            tGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTa                                             <  2:2334742/93‑1 (MQ=255)

                                              gATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATg                                           <  1:2908922/93‑1 (MQ=255)

                                              gATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATg                                           <  2:5188080/93‑1 (MQ=255)

                                              gATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATg                                           <  1:2634523/93‑1 (MQ=255)

                                               aTTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATgg                                          <  1:7674897/93‑1 (MQ=255)

                                                 tAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATgggg                                        <  1:5399326/93‑1 (MQ=255)

                                                 tAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATgggg                                        >  2:5125861/1‑93 (MQ=255)

                                                  tagcagcATCCCAATTTAAAGGTGCTGGAAAATCCTTACTC‑CCCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATggggg                                       <  1:4441581/92‑1 (MQ=255)

                                                   agcagcATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGa                                      <  2:325106/93‑1 (MQ=255)

                                                    gcagcaTCCCAATTTAAAGGTGCTGGAAAATCCATACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTTTGGGGGAc                                     >  2:4552089/1‑93 (MQ=255)

                                                     cagcaTCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACa                                    >  2:135996/1‑93 (MQ=255)

                                                        caTCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTc                                 >  2:1185774/1‑93 (MQ=255)

                                                         aTCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCt                                <  1:1261712/93‑1 (MQ=255)

                                                          tCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCtt                               >  2:6549748/1‑93 (MQ=255)

                                                          tCCCAATTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCtt                               >  2:2798278/1‑93 (MQ=255)

                                                              aaTTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGGCATTCTTAata                           >  2:774114/1‑93 (MQ=255)

                                                              aaTTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAata                           <  1:870128/93‑1 (MQ=255)

                                                               aTTTAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAatat                          >  1:3220565/1‑93 (MQ=255)

                                                                tttAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAAtatt                         >  1:7405380/1‑93 (MQ=255)

                                                                 ttAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAAtatta                        <  2:3614119/93‑1 (MQ=255)

                                                                 ttAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAAtatta                        <  1:6826205/93‑1 (MQ=255)

                                                                  tAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAAtattat                       <  2:2068247/93‑1 (MQ=255)

                                                                  tAAAGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAAtattat                       <  2:4961257/93‑1 (MQ=255)

                                                                   aaaGGGGCTGTAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAATattatt                      <  1:7244262/93‑1 (MQ=255)

                                                                    aaGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAATAttatta                     >  1:2987130/1‑93 (MQ=255)

                                                                    aaGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAATAttatta                     <  1:1837480/93‑1 (MQ=255)

                                                                     aGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAATATTATTAc                    <  2:5814049/93‑1 (MQ=255)

                                                                     aGGTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAATATTATTAc                    >  1:1185749/1‑93 (MQ=255)

                                                                      ggTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAATATTATTAcc                   <  1:6050269/93‑1 (MQ=255)

                                                                      ggTGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAATATTATTAcc                   >  2:7579815/1‑93 (MQ=255)

                                                                        tGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAATATTATTACCtt                 <  2:7879002/93‑1 (MQ=255)

                                                                        tGCTGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAATATTATTACCtt                 <  1:268198/93‑1 (MQ=255)

                                                                           tGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGGCATTCTTAATATTATTACCTTGCa              >  1:4311853/1‑93 (MQ=255)

                                                                           tGGAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAATATTATTACCTTGCa              >  1:5863011/1‑93 (MQ=255)

                                                                            ggAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAATATTATTACCTTGCaa             >  2:2702252/1‑93 (MQ=255)

                                                                            ggAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAATATTATTACCTTGCaa             >  1:2053615/1‑93 (MQ=255)

                                                                            ggAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAATATTATTACCTTGCaa             <  2:3898116/93‑1 (MQ=255)

                                                                             gAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAATATTATTACCTTGCaaa            <  1:745061/93‑1 (MQ=255)

                                                                             gAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAATATTATTACCTTGCaaa            >  2:3956988/1‑93 (MQ=255)

                                                                             gAAAATCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAATATTATTACCTTGCaaa            >  2:1495835/1‑93 (MQ=255)

                                                                              aaaaTCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAATATTATTACCTTGCAAAc           <  1:1040326/93‑1 (MQ=255)

                                                                               aaaTCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAATATTATTACCTTGCAAACa          <  1:5516737/93‑1 (MQ=255)

                                                                               aaaTCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAATATTATTACCTTGCAAACa          <  1:636384/93‑1 (MQ=255)

                                                                                 aTCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAATATTATTACCTTGCAAACAgg        <  1:2740738/93‑1 (MQ=255)

                                                                                 aTCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAATATTATTACCTTGCAAACAgg        >  2:7287924/1‑93 (MQ=255)

                                                                                 aTCCTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAATATTATTACCTTGCAAACAgg        >  1:6499507/1‑93 (MQ=255)

                                                                                    cTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAATATTATTACCTTGCAAACAGGttt     >  1:3097071/1‑93 (MQ=255)

                                                                                    cTTACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAATATTATTACCTTGCAAACAGGttt     >  1:4217596/1‑93 (MQ=255)

                                                                                     ttACTCG‑CTCCCTATTCTATGATGTATTTAAATTGCTCGGTTTTTGGCGTTATGTTGGACATTCTTAATATTATTACCCTGCTAACAGGTGTa    >  1:6999759/1‑93 (MQ=255)

                                                                                     ctACTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAATATTATTACCTTGCAAACAGGTTTa    <  1:2423214/92‑1 (MQ=255)

                                                                                       aCTCG‑CCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAATATTATTACCTTGCAAACAGGTTTaaa  <  1:5367988/93‑1 (MQ=255)

CCTTTCTGAACAAACCATTAGAACTCACTGAACATGAAAAACAGTGGATTAAGCAGCATCCCAATTTAAAGGTGCTGGAAAATCCTTACTCGCCCCCCTATTCTATGACGGATGAAAATGGCTCGGTTCGGGGCGTTATGGGGGACATTCTTAATATTATTACCTTGCAAACAGGTTTAAA  >  NC_000913/2483238‑2483418

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`