| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,008,400 | +GAAA | coding (483/516 nt) | b4555 → | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,008,398 | 1 | . | A | 98.9% | 329.1 / ‑5.5 | 94 | E161K (GAA→AAA) | b4555 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); major base A (34/59); minor base G (1/0); total (35/59) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.72e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01 | |||||||||||
| * | NC_000913 | 4,008,398 | 2 | . | A | 98.9% | 335.9 / ‑3.3 | 94 | coding (481/516 nt) | b4555 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base A (35/58); total (35/59) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.29e-01 | |||||||||||
| * | NC_000913 | 4,008,398 | 3 | . | G | 98.9% | 285.4 / ‑3.4 | 94 | coding (481/516 nt) | b4555 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (35/58); total (35/59) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.57e-01 | |||||||||||
| * | NC_000913 | 4,008,398 | 4 | . | A | 98.9% | 331.9 / ‑3.3 | 94 | coding (481/516 nt) | b4555 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base A (35/58); total (35/59) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.36e-01 | |||||||||||
Only 100 of 113 total aligned reads displayed.
GCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGC‑‑‑G‑‑‑‑AAC‑T‑GGCTACAG‑CTGAAGGATT‑G‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTG > NC_000913/4008309‑4008458 |||| gCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTTA‑AAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑G‑‑‑‑a > 1:6021564/1‑93 (MQ=255) cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑G‑‑‑‑aa < 2:5876197/93‑1 (MQ=255) cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑G‑‑‑‑aa < 2:1756023/93‑1 (MQ=255) cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑G‑‑‑‑aa < 2:3476810/93‑1 (MQ=255) cGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑GTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑G‑‑‑‑aa > 2:7825112/1‑93 (MQ=255) gATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑G‑‑‑‑aag > 2:6168524/1‑92 (MQ=255) aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGGAGCGGTGGC‑‑‑G‑‑‑‑aaga > 1:3816411/1‑91 (MQ=255) aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑G‑‑‑‑aaga < 2:1742079/93‑3 (MQ=255) aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGAGATGGCGGGCTGCG‑TTTCAAAAGGCCTCGCGCTGGAAGCGGTGGC‑‑‑G‑‑‑‑aaga > 2:6243978/1‑91 (MQ=255) aTCGCGTCAACGTCAGTGTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑G‑‑‑‑aaga < 2:5679147/93‑3 (MQ=255) tCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑G‑‑‑‑aagaa < 2:6345123/93‑4 (MQ=255) cgcgTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑G‑‑‑‑aagaaa < 1:6645153/93‑5 (MQ=255) cgcgTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑G‑‑‑‑aagaaa > 2:6900205/1‑89 (MQ=255) cgcgTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑G‑‑‑‑aagaaa < 1:6133066/93‑5 (MQ=255) cgcgTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑G‑‑‑‑aagaaa < 1:7277068/93‑5 (MQ=255) cgcgTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑G‑‑‑‑aagaaa < 2:5096779/93‑5 (MQ=255) cgcgTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑G‑‑‑‑aagaaa < 1:6133067/93‑5 (MQ=255) cgcgTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑G‑‑‑‑aagaaa < 2:7537857/93‑5 (MQ=255) gcTGGAAGTGATGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGtt < 1:2469917/92‑1 (MQ=255) cTGGAAGTGATGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGttt < 2:5755912/93‑2 (MQ=255) cTGGAAGTGATGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGttt < 1:1059237/93‑2 (MQ=255) cTGGAAGTGATGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGttt < 1:6824227/93‑2 (MQ=255) tGGAAGTGATGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGtttg < 2:5036371/93‑3 (MQ=255) tGGAAGTGATGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGtttg < 1:6350927/93‑3 (MQ=255) ggAAGTGATGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGtttgg > 2:1261370/1‑90 (MQ=255) ggAAGTGATGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGtttgg < 1:1061422/93‑4 (MQ=255) ggAAGTGATGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGtttgg < 1:176140/93‑4 (MQ=255) ggAAGTGATGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGtttgg < 1:251791/93‑4 (MQ=255) ggAAGTGATGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGtttgg > 2:137114/1‑90 (MQ=255) gAAGTGATGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGtttggg > 1:2317758/1‑89 (MQ=255) aTGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACggg > 2:502144/1‑93 (MQ=255) aTGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACggg < 2:3772951/93‑1 (MQ=255) aTGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACggg > 2:3179687/1‑93 (MQ=255) tGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGa < 2:4595843/93‑1 (MQ=255) tGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGa < 1:7051633/93‑1 (MQ=255) tGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGa < 1:3177291/93‑1 (MQ=255) tGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGa < 1:3150267/93‑1 (MQ=255) tGGCGGGCGGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGa < 1:2285960/93‑1 (MQ=255) ggcgggcgGCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGAt < 2:5824838/93‑1 (MQ=255) gcgggcggGG‑TTTCAAAACGCCATGCGCTGGAAGCGGTGGCTAAGA‑‑‑AAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATg < 2:2141291/93‑1 (MQ=255) cgggcggCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGa < 1:2852182/93‑1 (MQ=255) gggcggCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGaa < 2:4150200/93‑1 (MQ=255) gggcggCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGaa < 1:6448749/93‑1 (MQ=255) gggcggCG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGaa > 1:7618833/1‑93 (MQ=255) ggcggcG‑TTTCAAAAGGCCATGCGGTGGAAGCGGTGGC‑‑‑GAAGAAACGG‑GGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAac < 1:7078414/93‑1 (MQ=255) ggcggcG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAac < 2:5450451/93‑1 (MQ=255) ggcggcG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAac > 1:2114222/1‑93 (MQ=255) ggcggcG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAac < 1:7078413/93‑1 (MQ=255) ggcggcG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAac < 1:2454381/93‑1 (MQ=255) ggcggcG‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGAGGAac > 2:2476240/1‑93 (MQ=255) gcggcg‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacg > 2:2387781/1‑93 (MQ=255) gcggcg‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacg < 2:7488011/93‑1 (MQ=255) cggcg‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacga < 1:3005645/93‑1 (MQ=255) cggcg‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacga < 1:1673796/93‑1 (MQ=255) cggcg‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacga < 1:4611868/93‑1 (MQ=255) ggcg‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacgac > 1:4823526/1‑93 (MQ=255) gcg‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacgacg > 1:3319815/1‑93 (MQ=255) gcg‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAacgacc > 1:5719364/1‑92 (MQ=255) cg‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGc < 1:3574992/93‑1 (MQ=255) cg‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGc < 2:5618425/93‑1 (MQ=255) cg‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GAATTGCGTTTGGTGACGGGATGAACGACGc < 2:2986547/93‑1 (MQ=255) g‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGcg > 1:1056564/1‑92 (MQ=255) g‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGcc < 1:2079819/93‑1 (MQ=255) g‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGcc > 1:2358208/1‑93 (MQ=255) g‑TTTCAAAAGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGcc < 2:6601284/93‑1 (MQ=255) g‑TTTCAAAAGGCCATGCGCTGGAAGCGGCGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGcg > 2:5160899/1‑92 (MQ=255) ttcaaaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGa < 2:4918077/89‑1 (MQ=255) tcaaaaGGCCATGCGCTGGAAGTGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGaa > 1:1052812/4‑93 (MQ=255) tcaaaaGGCCATGCGCTGGAAGTGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGaa > 1:4635586/4‑93 (MQ=255) tcaaaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGaa > 2:1515050/4‑93 (MQ=255) tcaaaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGaa < 2:6658377/90‑1 (MQ=255) caaaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa < 1:5041729/91‑1 (MQ=255) caaaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa < 2:1777780/91‑1 (MQ=255) caaaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa < 2:7352998/91‑1 (MQ=255) caaaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa < 2:1472139/91‑1 (MQ=255) caaaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa > 1:3649935/3‑93 (MQ=255) caaaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa < 1:4433613/91‑1 (MQ=255) caaaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa < 1:4920707/91‑1 (MQ=255) caaaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa < 1:7277919/91‑1 (MQ=255) caaaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa < 1:5401855/91‑1 (MQ=255) caaaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa > 1:553209/3‑93 (MQ=255) aaaaGGCCATGCGCTGGAAGCGGTTGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt < 1:975371/92‑1 (MQ=255) aaaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GGAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACCACGCCGAAAt > 2:6936036/2‑93 (MQ=255) aaaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt < 1:5409834/92‑1 (MQ=255) aaaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt > 2:4664414/2‑93 (MQ=255) aaaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAAAGACGCCGAAAt > 2:3481560/2‑93 (MQ=255) aaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGCCGCCGAAATg > 2:2449115/1‑93 (MQ=255) aaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg > 1:7112816/1‑93 (MQ=255) aaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg < 1:6346996/93‑1 (MQ=255) aaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg > 2:3147096/1‑93 (MQ=255) aaaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg > 1:6421733/1‑93 (MQ=255) aaGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGc > 2:7165808/1‑93 (MQ=255) aGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATTGG‑ATTGAGTTTGGGGACGGGATGAACGACGCCGAAGTGCt > 1:6774615/1‑93 (MQ=255) aGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt > 2:3129636/1‑93 (MQ=255) aGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt > 2:4224177/1‑93 (MQ=255) aGGCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt < 1:48196/93‑1 (MQ=255) ggCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTg < 1:2850945/93‑1 (MQ=255) ggCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTg < 1:642075/93‑1 (MQ=255) ggCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTg < 1:4692973/93‑1 (MQ=255) ggCCATGCGCTGGAAGCGGTGGC‑‑‑GAAGAAAC‑TGGGCTACAGCCTGAAGGATT‑GTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTg < 1:6027781/93‑1 (MQ=255) |||| GCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCG‑TTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGC‑‑‑G‑‑‑‑AAC‑T‑GGCTACAG‑CTGAAGGATT‑G‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTG > NC_000913/4008309‑4008458 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |