Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,439,191 T→C H41R (CAC→CGC)  rpsD ← 30S ribosomal subunit protein S4

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,439,1910TC99.5% 1274.8 / ‑5.1 408H41R (CAC→CGC) rpsD30S ribosomal subunit protein S4
Reads supporting (aligned to +/- strand):  ref base T (0/2);  new base C (185/221);  total (185/223)
Fisher's exact test for biased strand distribution p-value = 5.03e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 420 total aligned reads displayed.

TGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGTGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCACGACGGCTC  >  NC_000913/3439101‑3439280
                                                                                          |                                                                                         
tGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCgcgc                                                                                         >  1:1560294/1‑93 (MQ=255)
 taCGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCt                                                                                        <  1:2626427/92‑1 (MQ=255)
  aCGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTg                                                                                       >  2:3939384/1‑93 (MQ=255)
    gCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGc                                                                                     >  2:7752136/1‑93 (MQ=255)
     cTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGcc                                                                                    <  1:5021959/93‑1 (MQ=255)
      tCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCa                                                                                   <  2:758154/93‑1 (MQ=255)
        cAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAgg                                                                                 >  2:2603757/1‑93 (MQ=255)
        cAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAgg                                                                                 >  1:797150/1‑93 (MQ=255)
         aGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGa                                                                                <  1:139454/93‑1 (MQ=255)
         aGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGa                                                                                >  1:7644979/1‑93 (MQ=255)
          gCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAg                                                                               >  1:7758307/1‑93 (MQ=255)
          gCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAg                                                                               <  2:6362464/93‑1 (MQ=255)
            acacCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCt                                                                             >  2:624181/1‑93 (MQ=255)
            acacCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCt                                                                             >  1:32381/1‑93 (MQ=255)
            acacCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCt                                                                             >  1:7773398/1‑93 (MQ=255)
            acacCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCt                                                                             <  2:3601364/93‑1 (MQ=255)
            acacCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCt                                                                             >  2:2451215/1‑93 (MQ=255)
            acacCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCAAGGAGCt                                                                             >  2:7271438/1‑93 (MQ=255)
             cacCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCtt                                                                            <  1:233787/93‑1 (MQ=255)
             cacCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCtt                                                                            <  1:3706598/93‑1 (MQ=255)
             cacCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCtt                                                                            >  1:7419002/1‑93 (MQ=255)
                cATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGtt                                                                         >  1:1142109/1‑93 (MQ=255)
                 aTAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTc                                                                        >  1:5554251/1‑93 (MQ=255)
                  tAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCa                                                                       >  2:156212/1‑93 (MQ=255)
                    gATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAAt                                                                     <  1:4037279/93‑1 (MQ=255)
                    gATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAAt                                                                     >  2:1762345/1‑93 (MQ=255)
                    gATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAAt                                                                     >  1:4687250/1‑93 (MQ=255)
                     aTACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAAtt                                                                    <  1:1983945/93‑1 (MQ=255)
                      tACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAAttt                                                                   <  2:3019599/93‑1 (MQ=255)
                         ggCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTac                                                                >  2:6792233/1‑93 (MQ=255)
                          gCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACGGACGCGGTTTACGCGCACCGCGCTGCCCAGGAGCTTGTTCAATTTTaca                                                               <  1:5351048/93‑1 (MQ=255)
                          gCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTaca                                                               <  1:3606518/93‑1 (MQ=255)
                          gCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTaca                                                               <  2:5654167/93‑1 (MQ=255)
                           cGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTacac                                                              <  2:3242254/93‑1 (MQ=255)
                            gAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACt                                                             <  1:7898795/93‑1 (MQ=255)
                            gAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACt                                                             >  1:6371946/1‑93 (MQ=255)
                            gAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACt                                                             <  1:4902140/93‑1 (MQ=255)
                             aaCTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACtt                                                            >  2:2055933/1‑93 (MQ=255)
                             aaCTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACtt                                                            <  2:1363764/93‑1 (MQ=255)
                             aaCTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACtt                                                            <  2:1596322/93‑1 (MQ=255)
                              aCTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTg                                                           <  1:6571343/93‑1 (MQ=255)
                              aCTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTg                                                           <  1:971655/93‑1 (MQ=255)
                              aCTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTg                                                           <  1:5224036/93‑1 (MQ=255)
                                tttttGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGt                                                         >  2:3776061/1‑93 (MQ=255)
                                tttttGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGt                                                         >  1:4955454/1‑93 (MQ=255)
                                 ttttGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTa                                                        <  2:214642/93‑1 (MQ=255)
                                 ttttGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTa                                                        <  2:6940273/93‑1 (MQ=255)
                                  tttGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTat                                                       <  2:3395587/93‑1 (MQ=255)
                                   ttGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTatc                                                      <  1:2718368/93‑1 (MQ=255)
                                     gCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTatcga                                                    <  2:1680093/93‑1 (MQ=255)
                                     gCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTatcga                                                    >  1:4361887/1‑93 (MQ=255)
                                      cTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTatcgat                                                   <  2:6634923/93‑1 (MQ=255)
                                      cTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTatcgat                                                   <  1:680449/93‑1 (MQ=255)
                                      cTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTatcgat                                                   <  2:3679922/93‑1 (MQ=255)
                                      cTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTatcgat                                                   >  1:6422575/1‑93 (MQ=255)
                                             cGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGa                                            <  2:4069695/93‑1 (MQ=255)
                                              gCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGaa                                           <  1:6294796/93‑1 (MQ=255)
                                              gCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGaa                                           <  2:5802072/93‑1 (MQ=255)
                                              gCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTGGTTCAATTTTACACTTGGTATCGATCGCGCGaa                                           <  1:168572/93‑1 (MQ=255)
                                                 aCTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGc                                        >  2:1082894/1‑93 (MQ=255)
                                                 aCTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGc                                        <  2:2757764/93‑1 (MQ=255)
                                                  cTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGcg                                       >  1:5126806/1‑92 (MQ=255)
                                                   tGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCa                                      >  1:3125209/1‑93 (MQ=255)
                                                    gCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAg                                     >  1:2942826/1‑93 (MQ=255)
                                                         ccATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTa                                <  2:5440246/93‑1 (MQ=255)
                                                          cATAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTaa                               <  2:6109818/93‑1 (MQ=255)
                                                           aTAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAg                              >  2:4896201/1‑93 (MQ=255)
                                                            tAGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAgg                             <  2:5014521/93‑1 (MQ=255)
                                                             aGTCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGa                            <  2:7108946/93‑1 (MQ=255)
                                                               tCAGACAGACGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAAt                          <  2:3852904/93‑1 (MQ=255)
                                                                cagacagaCGCGGTTTACGCGCAACGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATa                         <  2:4352357/93‑1 (MQ=255)
                                                                 aggcagacGCGGTTTACGCGCACCGGGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATaa                        <  2:6585631/90‑1 (MQ=255)
                                                                 agacagacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATaa                        <  2:4528351/93‑1 (MQ=255)
                                                                  gacagacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAg                       >  1:1290659/1‑93 (MQ=255)
                                                                   acagacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGt                      >  1:3344456/1‑93 (MQ=255)
                                                                   acagacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGt                      >  1:1820475/1‑93 (MQ=255)
                                                                     agacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCg                    >  2:7895210/1‑93 (MQ=255)
                                                                      gacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCgg                   <  2:4272155/93‑1 (MQ=255)
                                                                      gacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCgg                   >  1:2255385/1‑93 (MQ=255)
                                                                      gacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCgg                   >  1:2101243/1‑93 (MQ=255)
                                                                      gacGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCgg                   <  2:4810384/93‑1 (MQ=255)
                                                                       acGCGGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGt                  <  2:5232308/93‑1 (MQ=255)
                                                                          cgGTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGcc               >  1:1015875/1‑93 (MQ=255)
                                                                           ggTTTACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGccc              >  2:5951232/1‑93 (MQ=255)
                                                                             tttACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTc            >  1:4300479/1‑93 (MQ=255)
                                                                             tttACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTc            <  2:5527887/93‑1 (MQ=255)
                                                                             tttACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTc            >  1:2491761/1‑93 (MQ=255)
                                                                             tttACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTc            >  1:7597747/1‑93 (MQ=255)
                                                                              ttACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCa           >  1:5986523/1‑93 (MQ=255)
                                                                              ttACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCa           <  1:6194518/93‑1 (MQ=255)
                                                                               tACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCac          <  2:1235239/93‑1 (MQ=255)
                                                                               tACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCac          <  1:7048047/93‑1 (MQ=255)
                                                                               tACGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCac          <  1:5702565/93‑1 (MQ=255)
                                                                                aCGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCacg         >  2:5104292/1‑93 (MQ=255)
                                                                                aCGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCacg         >  1:7245734/1‑93 (MQ=255)
                                                                                aCGCGCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCacg         >  1:3018613/1‑93 (MQ=255)
                                                                                 cgcgCACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCacga        <  2:462522/93‑1 (MQ=255)
                                                                                  gcgcACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCacgac       <  1:6665386/93‑1 (MQ=255)
                                                                                  gcgcACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCacgac       >  1:1213169/1‑93 (MQ=255)
                                                                                   cgcACCGCGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCacgacg      <  1:4770614/93‑1 (MQ=255)
                                                                                          |                                                                                         
TGACGCTCCAGCACACCATAGATACGGCGAACTTTTTGCTTTTCACGCAACTGCACACCATAGTCAGACAGACGCGGTTTACGCGCACCGTGCTGGCCAGGAGCTTGTTCAATTTTACACTTGGTATCGATCGCGCGAACGCCAGACTTAAGGAATAAGTCGGTGCCCTCACGACGGCTC  >  NC_000913/3439101‑3439280

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑