Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,704,865 T→C K157R (AAG→AGG)  dppA ← dipeptide transport protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,704,8650TC99.8% 1293.2 / ‑5.1 409K157R (AAG→AGG) dppAdipeptide transport protein
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (199/209);  total (200/209)
Fisher's exact test for biased strand distribution p-value = 4.89e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.77e-01

Only 100 of 424 total aligned reads displayed.

GACAGAATAGAGGCGAAGTCCATTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCTTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTATGGTACGGGTTTTGCGCG  >  NC_000913/3704775‑3704954
                                                                                          |                                                                                         
gACAGAATAGAGGCGAAGTCCATTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCctt                                                                                         >  1:5507015/1‑93 (MQ=255)
 aCAGAATAGAGGCGAAGTCCATTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCcttt                                                                                        >  1:3412447/1‑93 (MQ=255)
 aCAGAATAGAGGCGAAGTCCATTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCcttt                                                                                        <  1:2538506/93‑1 (MQ=255)
   aGAATAGAGGCGAAGTCCATTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTttc                                                                                      >  1:4599941/1‑93 (MQ=255)
    gAATAGAGGCGAAGTCCATTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTttca                                                                                     >  2:3352762/1‑93 (MQ=255)
    gAATAGAGGCGAAGTCCATTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTttca                                                                                     >  1:4395552/1‑93 (MQ=255)
     aaTAGAGGCGAAGTCCATTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTttcac                                                                                    <  1:7542284/93‑1 (MQ=255)
      aTAGAGGCGAAGTCCATTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTttcact                                                                                   >  1:1438664/1‑93 (MQ=255)
        agagGCGAAGTCCATTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTttcacttc                                                                                 >  1:3910208/1‑93 (MQ=255)
         gagGCGAAGTCCATTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTttcccttca                                                                                >  2:1600724/1‑93 (MQ=255)
         gagGCGAAGTCCATTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTttcacttca                                                                                >  1:2311919/1‑93 (MQ=255)
           ggCGAAGTCCATTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTtcacttcact                                                                              >  1:954828/1‑93 (MQ=255)
           ggCGAAGTCCATTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTtcacttcact                                                                              <  1:5116135/93‑1 (MQ=255)
            gCGAAGTCCCTTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTg                                                                             <  2:6579670/93‑1 (MQ=255)
            gCGAAGTCCATTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTg                                                                             >  2:3262838/1‑93 (MQ=255)
            gCGAAGTCCATTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTg                                                                             <  1:6997593/93‑1 (MQ=255)
            gCGAAGTCCATTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTg                                                                             <  1:157051/93‑1 (MQ=255)
             cGAAGTCCATTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGa                                                                            <  1:7616260/93‑1 (MQ=255)
             cGAAGTCCATTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGa                                                                            <  1:3183059/93‑1 (MQ=255)
               aaGTCCATTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATc                                                                          >  2:5359501/1‑93 (MQ=255)
                aGTCCATTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCa                                                                         >  2:5037330/1‑93 (MQ=255)
                 gTCCATTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAg                                                                        >  2:7738245/1‑93 (MQ=255)
                 gTCCATTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAg                                                                        >  1:6420284/1‑93 (MQ=255)
                  tCCATTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGc                                                                       <  1:414543/93‑1 (MQ=255)
                    cATTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGctc                                                                     <  1:3271654/93‑1 (MQ=255)
                    cATTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGctc                                                                     <  2:6948056/93‑1 (MQ=255)
                     aTTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGctct                                                                    >  1:6088145/1‑93 (MQ=255)
                     aTTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGctct                                                                    <  1:2047838/93‑1 (MQ=255)
                     aTTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGctct                                                                    <  2:7284057/93‑1 (MQ=255)
                     aTTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGctct                                                                    >  1:4013865/1‑93 (MQ=255)
                      ttGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTg                                                                   >  2:1678240/1‑93 (MQ=255)
                      ttGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTg                                                                   >  1:1290449/1‑93 (MQ=255)
                      ttGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGGGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTg                                                                   >  1:7734530/1‑93 (MQ=255)
                          cAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCaa                                                               >  1:6612281/1‑93 (MQ=255)
                           aGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAg                                                              >  2:799963/1‑93 (MQ=255)
                             gTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGcc                                                            >  2:4228057/1‑93 (MQ=255)
                               cAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCa                                                          <  2:5310723/93‑1 (MQ=255)
                                aGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCAt                                                         >  1:3508388/1‑93 (MQ=255)
                                aGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCAt                                                         <  2:7180203/93‑1 (MQ=255)
                                 gcgcGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATg                                                        <  2:2918392/93‑1 (MQ=255)
                                 gCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATg                                                        >  2:4566805/1‑93 (MQ=255)
                                 gCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATg                                                        <  1:2841572/93‑1 (MQ=255)
                                    aGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCt                                                     >  1:6763292/1‑93 (MQ=255)
                                    aGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCt                                                     >  2:4094235/1‑93 (MQ=255)
                                    aGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCATTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCt                                                     <  1:194189/93‑1 (MQ=255)
                                     ggAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGGGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGGAAGCCCATGCCtt                                                    >  2:1070741/1‑93 (MQ=255)
                                      taaCGGCGCATCCGGGCTAGTCAGCACAAACTGAACGGTGTTGTCGTCCTCCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTc                                                   >  2:7046900/2‑93 (MQ=255)
                                      gAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCGNCTCTGGCAAGCCCATGCCTTc                                                   >  1:5903062/1‑93 (MQ=255)
                                      gAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTc                                                   <  2:6048830/93‑1 (MQ=255)
                                        aCGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGa                                                 <  2:1156742/93‑1 (MQ=255)
                                        aCGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGCTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGa                                                 >  2:6217941/1‑93 (MQ=255)
                                         cGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTTATCAGCTCTGGCAAGCCCATGCCTTCGaa                                                <  1:6691646/93‑1 (MQ=255)
                                         cGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGaa                                                <  1:5043271/93‑1 (MQ=255)
                                              cTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTAtt                                           >  2:2051335/1‑93 (MQ=255)
                                              cTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTAtt                                           <  1:1164758/93‑1 (MQ=255)
                                               ttCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTc                                          >  1:4780128/1‑93 (MQ=255)
                                                tCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCg                                         >  1:3778632/1‑93 (MQ=255)
                                                tCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCg                                         <  1:651933/93‑1 (MQ=255)
                                                 ccGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGt                                        <  2:5211933/93‑1 (MQ=255)
                                                   gggCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAg                                      <  2:1427777/93‑1 (MQ=255)
                                                      cGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTg                                   <  1:1045309/93‑1 (MQ=255)
                                                       gAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTgc                                  >  1:4851174/1‑93 (MQ=255)
                                                        aGTCAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTgcc                                 >  2:3087436/1‑93 (MQ=255)
                                                           cAGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTgccgcc                              <  1:1664438/93‑1 (MQ=255)
                                                            aGCACAAACTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCa                             >  2:2248534/1‑93 (MQ=255)
                                                                 aaaCTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAAc                        <  2:7499356/93‑1 (MQ=255)
                                                                 aaaCTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAAc                        <  2:3987845/93‑1 (MQ=255)
                                                                  aaCTGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGAAAGCCCATGCCTTCGAAGGATTCGTAGCTGCCGCCAGaacat                       >  2:2350153/1‑90 (MQ=255)
                                                                     tGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTa                    <  2:1299634/93‑1 (MQ=255)
                                                                     tGAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTa                    <  1:4108385/93‑1 (MQ=255)
                                                                      gAACGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTAt                   <  2:6731712/93‑1 (MQ=255)
                                                                       aaCGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTATg                  <  2:1886125/93‑1 (MQ=255)
                                                                       aaCGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTATg                  <  2:4749364/93‑1 (MQ=255)
                                                                        aCGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTATgg                 >  2:6837040/1‑93 (MQ=255)
                                                                         cGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCGAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTATGGt                <  1:7409432/93‑1 (MQ=255)
                                                                         cGGTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTATGGt                <  2:271254/93‑1 (MQ=255)
                                                                          ggTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTATGGTa               <  2:4363196/93‑1 (MQ=255)
                                                                          ggTGTTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTATGGTa               <  1:3044058/93‑1 (MQ=255)
                                                                           gtgtTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTATGGTAc              <  1:5725580/93‑1 (MQ=255)
                                                                           gtgtTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTATGGTAc              <  2:1330313/93‑1 (MQ=255)
                                                                           gtgtTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTATGGTAc              <  1:3574217/93‑1 (MQ=255)
                                                                           gtgtTGTCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTATGGTAc              <  2:6522445/93‑1 (MQ=255)
                                                                            tgttgtCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTATGGTACg             >  1:7830410/1‑93 (MQ=255)
                                                                             gttgtCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTATGGTACgg            >  2:5960272/1‑93 (MQ=255)
                                                                             gttgtCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTATGGTACgg            <  1:5250375/93‑1 (MQ=255)
                                                                             gttgtCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTATGGTACgg            >  1:4331541/1‑93 (MQ=255)
                                                                             gttgtCGGCCACCCTTTTCACTGCACTGATCAGCTCTTGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTATGGTACgg            <  2:6356490/93‑1 (MQ=255)
                                                                              ttgtCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTATGGTACggg           <  1:5619585/93‑1 (MQ=255)
                                                                               tgtCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTATGGTACGGGt          <  2:2477286/93‑1 (MQ=255)
                                                                               tgtCGTCCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTATGGTACGGGt          <  1:6918738/93‑1 (MQ=255)
                                                                                 tcgtcCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTATGGTACGGGttt        <  2:2990371/93‑1 (MQ=255)
                                                                                  cgtcCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTATGGTACGGGtttt       <  2:3754265/93‑1 (MQ=255)
                                                                                   gtcCACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTATGGTACGGGTTTTg      >  1:1880575/1‑93 (MQ=255)
                                                                                     ccACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTATGGTACGGGTTTTgcg    >  2:2083667/1‑93 (MQ=255)
                                                                                     ccACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTATGGTACGGGTTTTgcg    >  1:1397680/1‑93 (MQ=255)
                                                                                     ccACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTATGGTACGGGTTTTgcg    >  2:7770668/1‑93 (MQ=255)
                                                                                      cACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCGGAAACTTTATGGTACGGGTGTTgcgc   >  1:6414486/1‑93 (MQ=255)
                                                                                      cACCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTATGGGACGGGTTTTgcg  >  1:2108669/1‑92 (MQ=255)
                                                                                       aCCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTATGGTACGGGTTTTGcgcg  >  2:3507122/1‑93 (MQ=255)
                                                                                       aCCCTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTATGGTACGGGTTTTGcgcg  >  2:5580737/1‑93 (MQ=255)
                                                                                          |                                                                                         
GACAGAATAGAGGCGAAGTCCATTGCCAGGTCAGCGAGGAACGGCGCTTCCGGGCGAGTCAGCACAAACTGAACGGTGTTGTCGTCCACCTTTTTCACTTCACTGATCAGCTCTGGCAAGCCCATGCCTTCGAAGTATTCGTAGCTGCCGCCAGAAACTTTATGGTACGGGTTTTGCGCG  >  NC_000913/3704775‑3704954

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: