BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	411,562	T→C	A76A (GCA→GCG)	araJ ←	AraJ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	411,562	0	T	C	100.0%	828.6 / NA	266	A76A (GCA→GCG)	araJ	AraJ
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (152/114); total (152/114)

Only 100 of 283 total aligned reads displayed.

GCACAACGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTC  >  NC_000913/411472‑411651

gCACAACGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAgcgc                                                                                         >  1:991219/1‑93 (MQ=255)

 cacaACGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCa                                                                                        <  1:6955661/93‑1 (MQ=255)

  acaACGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGGGCGATGATTGGCGCACCGACCACCACCCCCAGCGCat                                                                                       >  1:6738679/1‑93 (MQ=255)

   caACGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCata                                                                                      >  2:4743288/1‑93 (MQ=255)

     aCGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCataat                                                                                    >  1:5163625/1‑93 (MQ=255)

       gCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATAc                                                                                  <  1:6860095/93‑1 (MQ=255)

       cccaccaGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATAc                                                                                  <  2:5906090/92‑1 (MQ=255)

        ccaccaGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACg                                                                                 >  2:3144011/1‑93 (MQ=255)

          accaGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACgag                                                                               >  2:7546594/1‑93 (MQ=255)

          accaGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACgag                                                                               >  1:149918/1‑93 (MQ=255)

          accaGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACgag                                                                               >  1:5649056/1‑93 (MQ=255)

           ccaGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACgaga                                                                              >  1:474605/1‑93 (MQ=255)

            caGAAACAACAAGTTATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGAt                                                                             >  1:7618296/1‑93 (MQ=255)

            caGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGAt                                                                             >  2:1612466/1‑93 (MQ=255)

            caGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGAt                                                                             <  1:5996481/93‑1 (MQ=255)

            caGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGAt                                                                             >  1:2530839/1‑93 (MQ=255)

             aGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATc                                                                            >  1:4657640/1‑93 (MQ=255)

              gAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCa                                                                           <  1:1160446/93‑1 (MQ=255)

              gAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCa                                                                           <  2:7306450/93‑1 (MQ=255)

              gAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCa                                                                           >  2:7378063/1‑93 (MQ=255)

               aaaCAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCat                                                                          >  1:2708022/1‑93 (MQ=255)

                aacaacAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCata                                                                         <  2:1871166/93‑1 (MQ=255)

                aacaacAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCata                                                                         <  1:7149419/93‑1 (MQ=255)

                 acaacaAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCatat                                                                        >  2:5971956/1‑93 (MQ=255)

                 acaacaAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCatat                                                                        <  2:5864793/93‑1 (MQ=255)

                  caacaaGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATg                                                                       <  1:104380/93‑1 (MQ=255)

                   aacaaGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGc                                                                      >  2:742676/1‑93 (MQ=255)

                   aacaaGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGc                                                                      >  2:352849/1‑93 (MQ=255)

                   aacaaGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGc                                                                      <  1:3657683/93‑1 (MQ=255)

                    acaaGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGcc                                                                     >  2:5310042/1‑93 (MQ=255)

                      aaGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCcg                                                                   >  2:6841483/1‑93 (MQ=255)

                      aaGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGGGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCcg                                                                   >  2:5903038/1‑93 (MQ=255)

                       aGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCcgg                                                                  <  2:3810091/93‑1 (MQ=255)

                       aGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCcgg                                                                  >  1:5067003/1‑93 (MQ=255)

                         atatGTTTGAGTGAGTAGCGGCTGGGAAAGAGAGCGATGATTGGCGCACCGACCACCACCCCCATCGCATCATACGGGATCCTATGCCcggcg                                                                >  1:4242064/1‑93 (MQ=255)

                          tatGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCcggcgg                                                               >  2:2908848/1‑93 (MQ=255)

                             gTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAg                                                            >  1:2367152/1‑93 (MQ=255)

                             gTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAg                                                            <  2:7090752/93‑1 (MQ=255)

                             gTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAg                                                            >  1:911197/1‑93 (MQ=255)

                                 gagtgagtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAAt                                                        <  1:1736688/93‑1 (MQ=255)

                                   gtgagtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCg                                                      >  1:3604442/1‑93 (MQ=255)

                                    tgagtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGa                                                     >  1:3201122/1‑93 (MQ=255)

                                     gagtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATTCCCGGCGGCAGGAATcaca                                                    >  1:7733154/1‑90 (MQ=255)

                                      agtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGaaa                                                   >  1:1783052/1‑93 (MQ=255)

                                      agtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGaaa                                                   <  2:50072/93‑1 (MQ=255)

                                         aGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTc                                                >  2:7411126/1‑93 (MQ=255)

                                         aGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTc                                                >  2:2453949/1‑93 (MQ=255)

                                            ggCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTa                                             >  1:163421/1‑93 (MQ=255)

                                            ggCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTa                                             <  2:4679364/93‑1 (MQ=255)

                                             gCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTAc                                            <  2:7643321/93‑1 (MQ=255)

                                             gCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTAc                                            <  1:1899574/93‑1 (MQ=255)

                                              cTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACg                                           >  1:207377/1‑93 (MQ=255)

                                               tGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGt                                          >  1:7473697/1‑93 (MQ=255)

                                                 gAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTa                                        >  1:238881/1‑93 (MQ=255)

                                                 gAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTa                                        <  2:1770131/93‑1 (MQ=255)

                                                 gAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTa                                        >  1:3929757/1‑93 (MQ=255)

                                                  aaaaGAGTGCGATGATTGGCGCACCGACCACCCCCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTAt                                       >  2:3523774/1‑93 (MQ=255)

                                                  aaaaGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTAt                                       >  1:6460696/1‑93 (MQ=255)

                                                   aaaGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATg                                      <  2:5709967/93‑1 (MQ=255)

                                                     agagTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATgcc                                    >  2:5075272/1‑92 (MQ=255)

                                                      gagTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATgcgc                                   <  2:129680/93‑1 (MQ=255)

                                                       agTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGcc                                  <  2:935205/93‑1 (MQ=255)

                                                        gTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCa                                 >  2:880121/1‑93 (MQ=255)

                                                        gTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCa                                 <  1:7868198/93‑1 (MQ=255)

                                                         tGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAg                                >  1:461700/1‑93 (MQ=255)

                                                         tGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAg                                >  2:1145356/1‑93 (MQ=255)

                                                            gatgatTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTc                             <  2:6987458/93‑1 (MQ=255)

                                                             atgatTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTcc                            <  2:6691147/93‑1 (MQ=255)

                                                             atgatTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTcc                            >  1:7377774/1‑93 (MQ=255)

                                                             atgatTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTcc                            >  2:1484757/1‑93 (MQ=255)

                                                              tgatTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCg                           >  1:1205305/1‑93 (MQ=255)

                                                              tgatTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCg                           >  2:2821817/1‑93 (MQ=255)

                                                               gatTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGt                          >  2:7875004/1‑93 (MQ=255)

                                                                 ttGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGa                        <  1:4209307/93‑1 (MQ=255)

                                                                 ttGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGa                        <  2:5593566/93‑1 (MQ=255)

                                                                  tGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAg                       <  1:4467383/93‑1 (MQ=255)

                                                                   ggCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGc                      >  1:4835342/1‑93 (MQ=255)

                                                                     cgcACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCAc                    <  2:7746704/93‑1 (MQ=255)

                                                                      gcACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACg                   >  2:4425670/1‑93 (MQ=255)

                                                                        cccGACCACCCCCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGcc                 <  2:2543347/92‑1 (MQ=255)

                                                                        aCCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGcc                 <  1:1951933/93‑1 (MQ=255)

                                                                        aCCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGcc                 >  1:5034068/1‑93 (MQ=255)

                                                                            accaccaccCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATa             <  1:651678/93‑1 (MQ=255)

                                                                             ccaccaccCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATaa            <  1:7105831/93‑1 (MQ=255)

                                                                               accaccCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCCTAAta          >  2:5374363/1‑92 (MQ=255)

                                                                               accaccCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATg          >  2:645023/1‑93 (MQ=255)

                                                                                ccaccCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGc         <  2:7217264/93‑1 (MQ=255)

                                                                                ccaccCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGc         >  1:5365903/1‑93 (MQ=255)

                                                                                ccaccCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGc         >  2:6255215/1‑93 (MQ=255)

                                                                                ccaccCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGc         >  1:822344/1‑93 (MQ=255)

                                                                                 caccCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGcc        >  2:4520177/1‑93 (MQ=255)

                                                                                    ccccAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCaaa     >  2:4244410/1‑93 (MQ=255)

                                                                                      ccAGCGCATAATACGAGATGAGATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAAtt   <  2:1264286/93‑1 (MQ=255)

                                                                                      ccAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAAtt   <  1:4115176/93‑1 (MQ=255)

                                                                                      ccAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAAtt   >  1:1308194/1‑93 (MQ=255)

                                                                                      ccAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAAtt   >  2:2337254/1‑93 (MQ=255)

                                                                                      ccAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAAtt   <  2:2708021/93‑1 (MQ=255)

                                                                                       cAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTc  >  2:6105681/1‑93 (MQ=255)

                                                                                       cAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTc  >  1:6354012/1‑93 (MQ=255)

                                                                                       cAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTc  >  2:2161235/1‑93 (MQ=255)

GCACAACGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTC  >  NC_000913/411472‑411651

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`