BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	431,405	C→T	intergenic (‑168/+131)	tsx ← / ← yajI	Tsx/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	431,405	0	C	T	100.0%	1141.9 / NA	310	intergenic (‑168/+131)	tsx/yajI	Tsx/hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (182/128); total (182/128)

Only 100 of 325 total aligned reads displayed.

GGAGCCTATTATAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGG  >  NC_000913/431315‑431494

ggagCCTATTATAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACatat                                                                                         <  2:4217785/93‑1 (MQ=255)

 gagCCTATTATAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATAtt                                                                                        >  2:5271102/1‑93 (MQ=255)

 gagCCTATTATAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATAtt                                                                                        <  2:5333737/93‑1 (MQ=255)

 gagCCTATTATAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATAtt                                                                                        <  2:6396928/93‑1 (MQ=255)

  agCCTATTATAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTc                                                                                       >  1:6822125/1‑93 (MQ=255)

   gCCTATTATAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTcg                                                                                      <  2:443940/93‑1 (MQ=255)

    ccTATTATAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTcgg                                                                                     <  2:3760199/93‑1 (MQ=255)

    ccTATTATAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTcgg                                                                                     >  1:6280142/1‑93 (MQ=255)

    ccTATTATAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTcgg                                                                                     <  1:4728874/93‑1 (MQ=255)

      tattatAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTcgggc                                                                                   >  1:2820551/1‑93 (MQ=255)

      tattatAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTcgggc                                                                                   >  1:3339190/1‑93 (MQ=255)

      tattatAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTcgggc                                                                                   >  1:4482190/1‑93 (MQ=255)

       attatAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTcgggcg                                                                                  >  2:6825499/1‑93 (MQ=255)

       attatAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTcgggcg                                                                                  <  1:4274824/93‑1 (MQ=255)

        ttatAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTcgggcgg                                                                                 >  1:7862876/1‑93 (MQ=255)

        ttatAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTcgggcgg                                                                                 >  2:4536582/1‑93 (MQ=255)

         tataAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTcgggcggg                                                                                >  2:2265088/1‑93 (MQ=255)

          ataAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCgggg                                                                               >  2:1671486/1‑93 (MQ=255)

           taAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGa                                                                              <  1:5866354/93‑1 (MQ=255)

            aaaaaTCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGAt                                                                             >  1:6139809/1‑93 (MQ=255)

            aaaaaTCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGAt                                                                             >  1:774539/1‑93 (MQ=255)

             aaaaTCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGAtt                                                                            >  1:3189485/1‑93 (MQ=255)

             aaaaTCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGAtt                                                                            >  2:5071947/1‑93 (MQ=255)

              aaaTCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTg                                                                           >  2:2844845/1‑93 (MQ=255)

                 tCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTAc                                                                        >  1:3684829/1‑93 (MQ=255)

                 tCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTAc                                                                        >  2:4051663/1‑93 (MQ=255)

                  cATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTTCACATATTCGGGCGGGGATTGTACt                                                                       >  1:1508563/1‑93 (MQ=255)

                   aTTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTg                                                                      >  2:5519150/1‑93 (MQ=255)

                    ttGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGa                                                                     <  1:4292531/93‑1 (MQ=255)

                     ttcacacaAAAATTTGTTTTTTTGAAAATTTCTATCGTTTACGTAATGGTTTGCGTTCACGTTTACACATATCCGGGGGGGGTTTGTCCGGAc                                                                    <  2:7014218/89‑1 (MQ=255)

                     tGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGAc                                                                    <  2:213196/93‑1 (MQ=255)

                       cTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACtt                                                                  >  2:1878183/1‑93 (MQ=255)

                         cacaAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTc                                                                <  2:6900993/93‑1 (MQ=255)

                          acaAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCg                                                               >  1:3518814/1‑93 (MQ=255)

                           caAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTCCTGACTTTCGc                                                              >  1:7482225/1‑93 (MQ=255)

                           caAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGc                                                              <  2:2945050/93‑1 (MQ=255)

                            aaaaaTATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGcc                                                             >  2:4762214/1‑93 (MQ=255)

                                 tatGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCttgt                                                        >  2:2519458/1‑93 (MQ=255)

                                 tatGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCttgt                                                        >  1:7917097/1‑93 (MQ=255)

                                 tatGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCttgt                                                        >  1:2479847/1‑93 (MQ=255)

                                  atGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCttgtt                                                       >  1:1448053/1‑93 (MQ=255)

                                   tGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCttgttg                                                      >  2:6099022/1‑93 (MQ=255)

                                   tGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCttgttc                                                      >  1:5227051/1‑92 (MQ=255)

                                     tttcgtttcACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCa                                                    >  2:3109453/1‑93 (MQ=255)

                                         gtttcACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACt                                                >  2:4839826/1‑93 (MQ=255)

                                          tttcACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACtt                                               <  1:7350092/93‑1 (MQ=255)

                                          tttcACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACtt                                               >  2:1769699/1‑93 (MQ=255)

                                           ttcACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACttt                                              <  2:565940/93‑1 (MQ=255)

                                           ttcACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTATACTGACTTTCGACCTTGTTGCAAACttt                                              >  1:1901533/1‑93 (MQ=255)

                                            tcACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACtttt                                             >  2:7912493/1‑93 (MQ=255)

                                            tcACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACtttt                                             >  1:7299151/1‑93 (MQ=255)

                                            tcACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACtttt                                             >  1:5013781/1‑93 (MQ=255)

                                             cacaGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTa                                            >  2:1161670/1‑93 (MQ=255)

                                              acaGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTAc                                           >  1:7231446/1‑93 (MQ=255)

                                              acaGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCATTGTTGCAAACTTTTAc                                           >  2:1382665/1‑93 (MQ=255)

                                                aGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTa                                         >  2:822788/1‑93 (MQ=255)

                                                  ttCTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATc                                       >  1:5914016/1‑93 (MQ=255)

                                                    cTATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCaa                                     >  2:6732226/1‑93 (MQ=255)

                                                     tATCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAAt                                    >  2:2631951/1‑93 (MQ=255)

                                                      aTCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATc                                   >  2:2043772/1‑93 (MQ=255)

                                                      aTCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATc                                   >  2:6165584/1‑93 (MQ=255)

                                                       tCATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATcc                                  >  1:895102/1‑93 (MQ=255)

                                                        cATTTACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCa                                 >  1:6027116/1‑93 (MQ=255)

                                                          tttACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAgg                               >  1:1680509/1‑93 (MQ=255)

                                                          tttACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAgg                               >  2:7511575/1‑93 (MQ=255)

                                                           tttcGTAATCGATTGCGCTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGt                              <  2:1062804/90‑1 (MQ=255)

                                                           ttACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGt                              <  2:3502712/93‑1 (MQ=255)

                                                            tACGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTg                             <  2:1239223/93‑1 (MQ=255)

                                                             aCGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGa                            >  1:1004970/1‑93 (MQ=255)

                                                             aCGTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGa                            <  1:4350413/93‑1 (MQ=255)

                                                               gTAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATg                          >  2:7293957/1‑93 (MQ=255)

                                                                tAATCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGt                         <  2:2449539/93‑1 (MQ=255)

                                                                 aaTCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTa                        >  2:4099652/1‑93 (MQ=255)

                                                                 aaTCGATTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTa                        >  2:4755740/1‑93 (MQ=255)

                                                                      aTTGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCag                   >  1:6892113/1‑93 (MQ=255)

                                                                       ttGCGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCaga                  >  2:6366924/1‑93 (MQ=255)

                                                                         tcGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGt                <  1:2759400/92‑1 (MQ=255)

                                                                          cGTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTa               <  1:5269131/93‑1 (MQ=255)

                                                                           gTTCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTaa              >  2:3650660/1‑93 (MQ=255)

                                                                            ttCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAAc             >  1:4140731/1‑93 (MQ=255)

                                                                            ttCACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAAc             <  1:5732800/93‑1 (MQ=255)

                                                                              cACGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACaa           >  1:4568375/1‑93 (MQ=255)

                                                                               aCGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACaaa          >  1:2234636/1‑93 (MQ=255)

                                                                                cGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACaaaa         <  1:5174359/93‑1 (MQ=255)

                                                                                cGTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACaaaa         <  1:4981165/93‑1 (MQ=255)

                                                                                cGTTTACACATATTCGGGCGGGGATTGTACGGACTTTCGCCTTTGTTGCAAACTTTTACTATTAATCCAGGTGATGTAAGCAGAGTAACaaaa         <  2:4477447/93‑1 (MQ=255)

                                                                                 gTTTACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAAt        <  1:5950645/93‑1 (MQ=255)

                                                                                  tttACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAAta       >  1:6651046/1‑92 (MQ=255)

                                                                                  tttACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATg       <  1:206634/93‑1 (MQ=255)

                                                                                  tttACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATg       <  1:2534510/93‑1 (MQ=255)

                                                                                  tttACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATg       <  2:7821808/93‑1 (MQ=255)

                                                                                   ttACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGa      >  1:1195982/1‑93 (MQ=255)

                                                                                    tACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGAc     >  2:3069312/1‑93 (MQ=255)

                                                                                    tACACATATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGAc     <  2:7666302/93‑1 (MQ=255)

                                                                                     acacatATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACg    <  2:7193054/93‑1 (MQ=255)

                                                                                     acacatATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACg    >  1:97790/1‑93 (MQ=255)

                                                                                      cacataTTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACgg   >  1:5578446/1‑93 (MQ=255)

                                                                                      cacataTTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACgg   >  2:905299/1‑93 (MQ=255)

                                                                                       acataTTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACggg  >  2:3690812/1‑93 (MQ=255)

                                                                                       acataTTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACggg  >  1:7126073/1‑93 (MQ=255)

GGAGCCTATTATAAAAATCATTGCTCACAAAAATATGTTTCGTTTCACAGTTCTATCATTTACGTAATCGATTGCGTTCACGTTTACACACATTCGGGCGGGGATTGTACTGACTTTCGCCCTTGTTGCAAACTTTTACTATCAATCCAGGTGATGTAAGCAGAGTAACAAAATGACGGG  >  NC_000913/431315‑431494

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`