BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	480,099	A→G	intergenic (‑167/+379)	ybaJ ← / ← acrB	hypothetical protein/acridine efflux pump

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	480,099	0	A	G	100.0%	749.5 / NA	238	intergenic (‑167/+379)	ybaJ/acrB	hypothetical protein/acridine efflux pump
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (110/128); total (110/128)

Only 100 of 244 total aligned reads displayed.

TCTCGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATCGCCAGATGA  >  NC_000913/480009‑480187

tctcGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCt                                                                                        <  2:6389743/93‑1 (MQ=255)

 ctcGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCta                                                                                       >  1:2625939/1‑92 (MQ=255)

 ctcGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTc                                                                                       >  1:4271592/1‑93 (MQ=255)

  tcGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAACATTACAATTAGGAAGGAAGCGGGACAGGTCTCa                                                                                      >  1:6370896/1‑93 (MQ=255)

   cGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCAc                                                                                     >  2:7124201/1‑93 (MQ=255)

   cGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCAc                                                                                     <  1:5072179/93‑1 (MQ=255)

   cGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCAc                                                                                     <  1:4382269/93‑1 (MQ=255)

    gTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACt                                                                                    >  2:68454/1‑93 (MQ=255)

    gTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACt                                                                                    >  1:1994745/1‑93 (MQ=255)

    gTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACt                                                                                    >  2:2391572/1‑93 (MQ=255)

      ttGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACttt                                                                                  >  1:3730519/1‑93 (MQ=255)

      ttGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGAACAGGGCCCACttt                                                                                  >  2:6733002/1‑93 (MQ=255)

          tAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCa                                                                              <  2:570307/93‑1 (MQ=255)

          tAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCa                                                                              >  1:4544915/1‑93 (MQ=255)

           aGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCAt                                                                             <  2:4432138/93‑1 (MQ=255)

            gCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATa                                                                            >  2:3141520/1‑93 (MQ=255)

             cTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATAc                                                                           >  2:1170388/1‑93 (MQ=255)

              ttAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACt                                                                          >  1:3849751/1‑93 (MQ=255)

               tAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTa                                                                         >  2:2121974/1‑93 (MQ=255)

               tAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTa                                                                         >  1:617501/1‑93 (MQ=255)

                  cTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCa                                                                      <  1:2552131/93‑1 (MQ=255)

                  cTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCa                                                                      <  2:5508667/93‑1 (MQ=255)

                   tataAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCAc                                                                     >  1:4620367/1‑93 (MQ=255)

                      aaGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTaa                                                                  >  1:7603666/1‑93 (MQ=255)

                      aaGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTaa                                                                  <  1:5627565/93‑1 (MQ=255)

                      aaGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTaa                                                                  <  1:6288054/93‑1 (MQ=255)

                      aaGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTaa                                                                  <  1:7834359/93‑1 (MQ=255)

                      aaGCCACTCTTTGCAGGTTCTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTaa                                                                  <  2:4812385/93‑1 (MQ=255)

                       aGCCTCTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAAc                                                                 <  1:1641428/93‑1 (MQ=255)

                         ccACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAAccc                                                               >  2:4522510/1‑93 (MQ=255)

                           aCTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCgc                                                             >  2:5950749/1‑93 (MQ=255)

                            ctctTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCgca                                                            >  2:4849375/1‑93 (MQ=255)

                            ctctTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCgca                                                            >  2:7746399/1‑93 (MQ=255)

                            ctctTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCgca                                                            <  1:2426876/93‑1 (MQ=255)

                             tctTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCgcag                                                           >  1:977260/1‑93 (MQ=255)

                               tttGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCgcagca                                                         >  2:3579989/1‑93 (MQ=255)

                               tttGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCgcagca                                                         >  2:3052388/1‑93 (MQ=255)

                               tttGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCgcagca                                                         <  2:3763039/93‑1 (MQ=255)

                               tttGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCgcagca                                                         >  1:7632363/1‑93 (MQ=255)

                                 tGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAgg                                                       >  1:6550262/1‑93 (MQ=255)

                                 tGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAgg                                                       <  1:7472442/93‑1 (MQ=255)

                                  gCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGt                                                      <  1:3250332/93‑1 (MQ=255)

                                      gTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTaaaa                                                  >  1:5200660/1‑93 (MQ=255)

                                      gTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTaaaa                                                  >  1:697386/1‑93 (MQ=255)

                                       ttttCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAg                                                 >  2:5724421/1‑93 (MQ=255)

                                        tttCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGc                                                <  1:1232336/93‑1 (MQ=255)

                                           cATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGt                                             <  1:590563/93‑1 (MQ=255)

                                            aTCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGtt                                            >  1:7618964/1‑93 (MQ=255)

                                            aTCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGtt                                            <  2:6698929/93‑1 (MQ=255)

                                            aTCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGtt                                            <  1:5146915/93‑1 (MQ=255)

                                             tCGCATTATTACGAAAAATTACAGTTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGttt                                           <  2:5391944/93‑1 (MQ=255)

                                             tCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGttt                                           >  1:1005710/1‑93 (MQ=255)

                                             tCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGttt                                           >  2:6190310/1‑93 (MQ=255)

                                             tCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGttt                                           >  1:3033353/1‑93 (MQ=255)

                                               gCATTATTACGAAAAATTACAATTAGGAAGGACGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGc                                         <  1:6791124/93‑1 (MQ=255)

                                               gCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGc                                         >  1:6934365/1‑93 (MQ=255)

                                               gCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGc                                         <  1:3757187/93‑1 (MQ=255)

                                                cATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCt                                        >  1:6391538/1‑93 (MQ=255)

                                                 attattACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTc                                       <  1:7110649/93‑1 (MQ=255)

                                                 attattACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTc                                       <  2:7686372/93‑1 (MQ=255)

                                                  ttattaCGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCg                                      >  1:5555504/1‑93 (MQ=255)

                                                  ttattaCGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCg                                      >  1:3115245/1‑93 (MQ=255)

                                                  ttattaCGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCg                                      >  1:1487494/1‑93 (MQ=255)

                                                   tattaCGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGa                                     >  2:2371221/1‑93 (MQ=255)

                                                   tattaCGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGa                                     >  1:7557302/1‑93 (MQ=255)

                                                    attgCGAAAAAGTAGAATGAGCAAGGAAGCGGGACAGCAAGCTCTTCTTAATACTAAAAATATCCCGCAGCAGGAAAAAGCAGTTTGCGCGag                                    <  2:4137083/93‑2 (MQ=255)

                                                    attaCGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGaa                                    <  2:5859774/93‑1 (MQ=255)

                                                    attaCGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGaa                                    <  2:2752886/93‑1 (MQ=255)

                                                     ttaCGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAAc                                   <  1:5797599/93‑1 (MQ=255)

                                                      taCGAAAAATTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACt                                  >  2:428473/1‑93 (MQ=255)

                                                          aaaaaTTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTc                              <  2:4383598/93‑1 (MQ=255)

                                                            aaaTTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCAt                            <  2:2791189/93‑1 (MQ=255)

                                                             aaTTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATa                           >  1:1112089/1‑93 (MQ=255)

                                                              aTTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATaa                          >  1:4822996/1‑93 (MQ=255)

                                                              aTTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATaa                          <  2:3980521/93‑1 (MQ=255)

                                                              aTTACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATaa                          >  1:2179254/1‑93 (MQ=255)

                                                                tACAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACa                        >  2:1244510/1‑93 (MQ=255)

                                                                 aCAATTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACAt                       <  1:1400789/93‑1 (MQ=255)

                                                                   aaTTAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACAttt                     <  2:3927106/93‑1 (MQ=255)

                                                                      tAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAg                  <  1:169722/93‑1 (MQ=255)

                                                                      tAGGAAGGAAGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAg                  <  1:2241192/93‑1 (MQ=255)

                                                                        ggaaggaaGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGa                <  2:3742941/93‑1 (MQ=255)

                                                                        ggaaggaaGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGa                >  2:7350079/1‑93 (MQ=255)

                                                                        ggaaggaaGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGa                <  1:4283389/93‑1 (MQ=255)

                                                                        ggaaggaaGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGa                <  2:1012856/93‑1 (MQ=255)

                                                                        ggaaggaaGCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGa                >  2:1996947/1‑93 (MQ=255)

                                                                         gaaggaagCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGAt               <  1:340676/93‑1 (MQ=255)

                                                                           aggaagCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTa             <  2:528546/93‑1 (MQ=255)

                                                                           aggaagCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTa             <  1:7763102/93‑1 (MQ=255)

                                                                           aggaagCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTa             <  2:6559391/93‑1 (MQ=255)

                                                                           aggaagCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTa             <  1:6643226/93‑1 (MQ=255)

                                                                           aggaagCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTa             >  1:3166149/1‑93 (MQ=255)

                                                                            ggaagCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTAt            <  2:6878312/93‑1 (MQ=255)

                                                                             gaagCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATc           <  2:5056962/93‑1 (MQ=255)

                                                                             gaagCGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATc           >  1:2795837/1‑93 (MQ=255)

                                                                                 cGGGACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATCGCCa       <  1:7228598/93‑1 (MQ=255)

                                                                                    gACAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATCGCCAGAt    <  1:5815309/93‑1 (MQ=255)

                                                                                     aCAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATCGCCAGATg   >  2:2629687/1‑93 (MQ=255)

                                                                                      cAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATCGCCAGATGa  <  1:4007192/93‑1 (MQ=255)

                                                                                      cAGGGCTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATCGCCAGATGa  <  2:1451175/93‑1 (MQ=255)

TCTCGTTTGTTAGCTTAACTATAAGCCACTCTTTGCAGGTTTTCATCGCATTATTACGAAAAATTACAATTAGGAAGGAAGCGGGACAGGACTCACTTTTTCATACTAGCACTAACCCGCAGCAGGTAAAAGCAGTTTGCTCGAACTATTCATAACATTTCAGGATTATCGCCAGATGA  >  NC_000913/480009‑480187

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`