Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,076,069 T→C intergenic (+51/‑775) yiiD → / → yiiE putative acetyltransferase/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,076,0690TC99.6% 728.7 / NA 230intergenic (+51/‑775)yiiD/yiiEputative acetyltransferase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base C (78/151);  total (78/152)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 241 total aligned reads displayed.

ATTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGTCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTTCAG  >  NC_000913/4075979‑4076158
                                                                                          |                                                                                         
aTTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGccc                                                                                         >  2:2959051/1‑93 (MQ=255)
aTTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGccc                                                                                         >  2:4154695/1‑93 (MQ=255)
 tttGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCt                                                                                        <  1:6419095/93‑1 (MQ=255)
 tttGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCt                                                                                        <  2:6410240/93‑1 (MQ=255)
  ttGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCtt                                                                                       <  2:5084669/93‑1 (MQ=255)
  ttGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCtt                                                                                       >  1:7689249/1‑93 (MQ=255)
     gCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGc                                                                                    >  1:1838622/1‑93 (MQ=255)
     gCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGc                                                                                    <  1:469887/93‑1 (MQ=255)
       ccGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTa                                                                                  <  2:3155434/93‑1 (MQ=255)
        cGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTAt                                                                                 >  1:3926340/1‑93 (MQ=255)
         gTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTAtt                                                                                <  2:7839317/93‑1 (MQ=255)
         gTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTAtt                                                                                >  1:7267218/1‑93 (MQ=255)
           aTGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTc                                                                              <  1:7546464/93‑1 (MQ=255)
           aTGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTc                                                                              <  1:4365922/93‑1 (MQ=255)
           aTGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTc                                                                              <  2:478275/93‑1 (MQ=255)
           aTGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTc                                                                              <  2:2736386/93‑1 (MQ=255)
           aTGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTc                                                                              <  1:4084291/93‑1 (MQ=255)
            tGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCg                                                                             >  1:501618/1‑93 (MQ=255)
            tGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCg                                                                             <  1:4816274/93‑1 (MQ=255)
             gAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCgg                                                                            >  1:5724417/1‑93 (MQ=255)
              aaGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCGGGTCATTTATATTAGCCCTTGGCTATTTCGGt                                                                           <  1:1092522/93‑1 (MQ=255)
              aaGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGt                                                                           <  2:1000285/93‑1 (MQ=255)
                gagGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTta                                                                         <  2:4456956/93‑1 (MQ=255)
                gagGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTta                                                                         <  1:396402/93‑1 (MQ=255)
                 agGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTtat                                                                        >  1:2135778/1‑93 (MQ=255)
                 agGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTtat                                                                        >  2:1989735/1‑93 (MQ=255)
                  gggCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTtata                                                                       <  2:1808973/93‑1 (MQ=255)
                  gggCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTtata                                                                       <  2:5471180/93‑1 (MQ=255)
                   ggCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTatat                                                                      <  2:1012267/93‑1 (MQ=255)
                   ggCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTatat                                                                      <  1:2561517/93‑1 (MQ=255)
                    gCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATAtt                                                                     <  1:4464891/93‑1 (MQ=255)
                     cGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTa                                                                    <  2:7647314/93‑1 (MQ=255)
                     cGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTa                                                                    <  2:2123165/93‑1 (MQ=255)
                      gggAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTaa                                                                   <  1:3166878/93‑1 (MQ=255)
                      gggAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTaa                                                                   <  2:3596983/93‑1 (MQ=255)
                       ggAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTaaa                                                                  <  2:4121922/93‑1 (MQ=255)
                        gAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAAt                                                                 <  1:5216116/93‑1 (MQ=255)
                        gAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAAt                                                                 <  1:1156793/93‑1 (MQ=255)
                            gaagaaGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGa                                                             <  1:7571359/93‑1 (MQ=255)
                            gaagaaGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGa                                                             <  2:7462850/93‑1 (MQ=255)
                            gaagaaGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGa                                                             >  2:6337445/1‑93 (MQ=255)
                             aagaagAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGaa                                                            <  1:3728311/93‑1 (MQ=255)
                             aagaagAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGaa                                                            <  1:4208097/93‑1 (MQ=255)
                             aagaagAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGaa                                                            >  2:1022052/1‑93 (MQ=255)
                              agaagaGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAAc                                                           >  1:4228303/1‑93 (MQ=255)
                               gaagaGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAAct                                                          >  1:6500775/1‑93 (MQ=255)
                                aagaGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAActc                                                         <  1:3527057/93‑1 (MQ=255)
                                aagaGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAActc                                                         <  1:7302492/93‑1 (MQ=255)
                                 agagTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAActct                                                        <  1:1356389/93‑1 (MQ=255)
                                  gagTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCta                                                       <  1:7081245/93‑1 (MQ=255)
                                  gagTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCta                                                       <  1:1567551/93‑1 (MQ=255)
                                  gagTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCta                                                       <  2:34765/93‑1 (MQ=255)
                                   agTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCtat                                                      <  1:795221/93‑1 (MQ=255)
                                    gTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTACCCCTTGGCTATTTTGGTTATATTAAATAAGAACTCtata                                                     >  1:6825354/1‑93 (MQ=255)
                                     tAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATaa                                                    <  2:819613/93‑1 (MQ=255)
                                     tAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATaa                                                    >  1:7134844/1‑93 (MQ=255)
                                      aGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATaaa                                                   <  1:6742913/93‑1 (MQ=255)
                                      aGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATaaa                                                   <  1:2756014/93‑1 (MQ=255)
                                      aGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATaaa                                                   <  1:2522437/93‑1 (MQ=255)
                                      aGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATaaa                                                   <  1:5851443/93‑1 (MQ=255)
                                        cTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAAtt                                                 <  1:5108152/93‑1 (MQ=255)
                                        cTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAAtt                                                 <  2:1850847/93‑1 (MQ=255)
                                          gATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAAtttt                                               <  2:6007036/93‑1 (MQ=255)
                                          gATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAAtttt                                               >  1:2666258/1‑93 (MQ=255)
                                           aTGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAAttttt                                              >  1:4501766/1‑93 (MQ=255)
                                              gagaGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTAtt                                           <  1:1015943/93‑1 (MQ=255)
                                               agagTGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTAttc                                          <  2:6969109/93‑1 (MQ=255)
                                                gagGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTAttct                                         <  1:2172431/93‑1 (MQ=255)
                                                gagGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTAttct                                         <  1:3814464/93‑1 (MQ=255)
                                                    ggCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGt                                     <  1:6001904/93‑1 (MQ=255)
                                                     gCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGtt                                    <  2:2433985/93‑1 (MQ=255)
                                                      cGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTg                                   <  2:1630925/93‑1 (MQ=255)
                                                       ggTGCTACCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTATATAACTTTTTATTCTTCGTTgg                                  <  2:7009895/93‑1 (MQ=255)
                                                         tgctgcCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCt                                >  1:3411066/1‑93 (MQ=255)
                                                           ctgcCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTcc                              <  2:6777299/93‑1 (MQ=255)
                                                           ctgcCTCTCTCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTcc                              <  2:5206433/93‑1 (MQ=255)
                                                               ctctctCATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATAc                          <  2:6171643/93‑1 (MQ=255)
                                                                tctctcATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACg                         >  2:3722698/1‑93 (MQ=255)
                                                                tctctcATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACg                         >  2:5575666/1‑93 (MQ=255)
                                                                 ctctcATTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACgt                        >  2:1419860/1‑93 (MQ=255)
                                                                      atccAGGTCATTTATAGTAGCCCTTTGATATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTTTCtt                   <  1:407845/90‑1 (MQ=255)
                                                                      aTTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCtt                   <  1:6107716/93‑1 (MQ=255)
                                                                      aTTCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCtt                   >  1:2948119/1‑93 (MQ=255)
                                                                       ttCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTg                  >  1:4577612/1‑93 (MQ=255)
                                                                        tCAGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGc                 <  2:22465/93‑1 (MQ=255)
                                                                          aGGTCATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTa               <  2:6642150/93‑1 (MQ=255)
                                                                              cATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATc           >  1:3567863/1‑93 (MQ=255)
                                                                              cATTTATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATc           >  2:1497667/1‑93 (MQ=255)
                                                                                tttATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCAc         >  2:2937496/1‑93 (MQ=255)
                                                                                tttATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCAc         <  2:2537577/93‑1 (MQ=255)
                                                                                tttATATTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCAc         >  1:4395078/1‑93 (MQ=255)
                                                                                   atatTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGt      <  2:5456707/93‑1 (MQ=255)
                                                                                   atatTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGt      <  2:3247012/93‑1 (MQ=255)
                                                                                    tatTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGtt     >  1:7871995/1‑93 (MQ=255)
                                                                                    tatTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGtt     >  1:5512510/1‑93 (MQ=255)
                                                                                     atTAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTTc    >  1:6837642/1‑93 (MQ=255)
                                                                                      ttAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTTCa   <  2:6305974/93‑1 (MQ=255)
                                                                                      ttAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTTCa   <  2:4885574/93‑1 (MQ=255)
                                                                                      ttAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTTCa   >  2:7236989/1‑93 (MQ=255)
                                                                                       tAGCCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTTCAg  <  2:2875526/93‑1 (MQ=255)
                                                                                          |                                                                                         
ATTTGGCCCGTATGAAGAGGGCGGGAACGAAGAAGAGTAGCTGATGGAGAGGGGCGGTGCTGCCTCTCTCATTCAGGTCATTTATATTAGTCCTTGGCTATTTCGGTTATATTAAATAAGAACTCTATAAATTTTTATTCTTCGTTGGCTCCATACGTGTCTTGCTACATCACTGTTCAG  >  NC_000913/4075979‑4076158

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: