Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,348,017 C→T A408A (GCG→GCA yjdH ← putative 2‑component sensor protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,348,0170CT99.7% 1358.8 / NA 373A408A (GCG→GCAyjdHputative 2‑component sensor protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base T (203/169);  minor base G (0/1);  total (203/170)
Fisher's exact test for biased strand distribution p-value = 4.56e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 392 total aligned reads displayed.

CGTGGTAATCAGCGTCGCGACCTGGTCCTCACTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTCGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCAATCTCTTCCTGATAGTTATT  >  NC_000913/4347927‑4348106
                                                                                          |                                                                                         
cGTGGTAATCAGCGTCGCGACCTGGTCCTCACTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTtgc                                                                                         >  1:959464/1‑93 (MQ=255)
     tAATCAGCGTCGCGACCTGGTCCTCACTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGt                                                                                    >  2:3447431/1‑93 (MQ=255)
     tAATCAGCGTCGCGACCTGGTCCTCACTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGt                                                                                    <  1:5532307/93‑1 (MQ=255)
        tCAGCGTCGCGACCTGGTCCTCACTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTaa                                                                                 >  2:365888/1‑93 (MQ=255)
          aGCGTCGCGACCTGGTCCTCACTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATc                                                                               >  1:3892939/1‑93 (MQ=255)
          aGCGTCGCGACCTGGTCCTCACTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATc                                                                               >  1:574033/1‑93 (MQ=255)
           gCGTCGCGACCTGGTCCTCACTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCt                                                                              >  2:2390517/1‑93 (MQ=255)
              tCGCGACCTGGTCCTCACTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGc                                                                           >  1:6503189/1‑93 (MQ=255)
              tCGCGACCTGGTCCTCACTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGc                                                                           >  2:1139320/1‑93 (MQ=255)
              tCGCGACCTGGTCCTCACTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGc                                                                           >  1:1943409/1‑93 (MQ=255)
              tCGCGACCTGGTCCTCACTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGc                                                                           <  1:7539972/93‑1 (MQ=255)
                 cgACCTGGTCCTCACTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGa                                                                        <  2:7136033/93‑1 (MQ=255)
                  gACCTGGTCCTCACTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGAt                                                                       >  1:6327196/1‑93 (MQ=255)
                  gACCTGGTCCTCACTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGAt                                                                       <  2:7819136/93‑1 (MQ=255)
                   aCCTGGTCCTCACTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGAtt                                                                      >  2:2478378/1‑93 (MQ=255)
                    ccTGGTCCTCACTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTa                                                                     >  2:7063877/1‑93 (MQ=255)
                    ccTGGTCCTCACTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTa                                                                     >  1:5027072/1‑93 (MQ=255)
                     cTGGTCCTCACTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTaa                                                                    <  2:3007822/93‑1 (MQ=255)
                     cTGGTCCTCACTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTaa                                                                    >  2:2308826/1‑93 (MQ=255)
                     cTGGTCCTCACTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTaa                                                                    >  1:7701621/1‑93 (MQ=255)
                       ggTCCTCACTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTaaaa                                                                  >  1:5959069/1‑93 (MQ=255)
                       ggTCCTCACTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTaaaa                                                                  >  2:5528944/1‑93 (MQ=255)
                        gTCCTCACTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTaaaaa                                                                 >  1:160193/1‑93 (MQ=255)
                          ccTCACTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAAc                                                               <  2:1314926/93‑1 (MQ=255)
                            tCACTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCa                                                             <  1:4525599/93‑1 (MQ=255)
                            tCACTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCa                                                             <  1:7377602/93‑1 (MQ=255)
                             cACTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAg                                                            <  2:1749359/93‑1 (MQ=255)
                              ccTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGc                                                           <  2:5308371/92‑1 (MQ=255)
                               cTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCg                                                          >  2:1607671/1‑93 (MQ=255)
                               cTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCg                                                          >  2:6358060/1‑93 (MQ=255)
                                tGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGa                                                         >  2:5665690/1‑93 (MQ=255)
                                  ccGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATa                                                       <  1:4434027/93‑1 (MQ=255)
                                   cGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATaa                                                      <  2:2690671/93‑1 (MQ=255)
                                    gCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAAc                                                     <  2:212943/93‑1 (MQ=255)
                                    gCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAAc                                                     >  1:1503198/1‑93 (MQ=255)
                                      tGTCTGGCAGCTGGCTTTCACTGTTTCAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCg                                                   >  1:4317439/1‑93 (MQ=255)
                                      tGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCg                                                   >  1:1005577/1‑93 (MQ=255)
                                       gTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCgg                                                  >  2:307178/1‑93 (MQ=255)
                                        tCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAACACCAGCGATAACCGga                                                 >  2:4412944/1‑93 (MQ=255)
                                         cTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGgag                                                <  2:5986749/93‑1 (MQ=255)
                                           ggCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGAt                                              <  1:2898240/93‑1 (MQ=255)
                                           ggCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGAt                                              <  2:7586553/93‑1 (MQ=255)
                                             cAGCTGTCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGAttt                                            <  1:1373579/93‑1 (MQ=255)
                                               gCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGa                                          >  1:111747/1‑93 (MQ=255)
                                               gCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGa                                          <  1:235146/93‑1 (MQ=255)
                                                cTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGAt                                         <  2:4755190/93‑1 (MQ=255)
                                                 tGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATc                                        <  1:6750971/93‑1 (MQ=255)
                                                  ggCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCt                                       >  2:6124814/1‑93 (MQ=255)
                                                   gCTTGCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCtt                                      <  2:7526465/93‑1 (MQ=255)
                                                     tttCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTAc                                    >  2:7917881/1‑93 (MQ=255)
                                                     tttCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTAc                                    >  1:6642800/1‑93 (MQ=255)
                                                     tttCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTAc                                    >  1:2243456/1‑93 (MQ=255)
                                                     tttCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTAc                                    >  2:1902418/1‑93 (MQ=255)
                                                     tttCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTAc                                    >  2:6570464/1‑93 (MQ=255)
                                                     tttCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTAc                                    <  1:4933521/93‑1 (MQ=255)
                                                      ttCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTAcc                                   <  2:7378650/93‑1 (MQ=255)
                                                      ttCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTAcc                                   <  2:6067781/93‑1 (MQ=255)
                                                      ttCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTAcc                                   <  1:3722041/93‑1 (MQ=255)
                                                       tCACTGTTTAAAATCAGCGTATGGTCTAAATCGGTTGCTCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTAccc                                  <  2:5112690/93‑1 (MQ=255)
                                                       tCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTAccc                                  >  2:3200151/1‑93 (MQ=255)
                                                       tCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTAccc                                  >  1:6985304/1‑93 (MQ=255)
                                                        cACTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCca                                 >  2:4054211/1‑93 (MQ=255)
                                                         aCTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCcag                                >  2:6769282/1‑93 (MQ=255)
                                                         aCTGTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCcag                                >  1:2005465/1‑93 (MQ=255)
                                                            gTTTAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCcagcag                             <  2:7652890/93‑1 (MQ=255)
                                                             tttAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCaga                            <  2:6483294/93‑1 (MQ=255)
                                                              ttAAAATCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCagag                           <  2:7326366/93‑1 (MQ=255)
                                                                  aaTCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGcc                       >  2:6904870/1‑93 (MQ=255)
                                                                    tCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCaa                     <  2:4624041/93‑1 (MQ=255)
                                                                    tCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCaa                     >  2:6693248/1‑93 (MQ=255)
                                                                    tCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCaa                     >  1:2788111/1‑93 (MQ=255)
                                                                    tCAGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCaa                     <  1:7148875/93‑1 (MQ=255)
                                                                      aGCGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGCTCTTACCCAGCAGAGAGCCAAtc                   >  2:5409065/1‑93 (MQ=255)
                                                                        cGTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCAAtctc                 <  2:2801810/93‑1 (MQ=255)
                                                                         gTATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCAATctct                <  2:2590780/93‑1 (MQ=255)
                                                                          tATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCAATCTCtt               <  2:1252596/93‑1 (MQ=255)
                                                                          tATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCAATCTCtt               >  1:1738974/1‑93 (MQ=255)
                                                                          tATGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCAATCTCtt               >  1:5905347/1‑93 (MQ=255)
                                                                           aTGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCAATCTCTTc              >  1:4794789/1‑93 (MQ=255)
                                                                            tGGCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCAATCTCTTcc             >  1:12836/1‑93 (MQ=255)
                                                                             ggCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCAATCTCTTCCt            >  2:5912612/1‑93 (MQ=255)
                                                                              gCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCAATCTCTTCCTg           <  1:3429246/93‑1 (MQ=255)
                                                                              gCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCAATCTCTTCCTg           <  1:2268556/93‑1 (MQ=255)
                                                                              gCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCAATCTCTTCCTg           >  2:5779631/1‑93 (MQ=255)
                                                                              gCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCAATCTCTTCCTg           >  2:7451081/1‑93 (MQ=255)
                                                                              gCCTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACACAGCAGAGAGCCAATCTCTTCCTg           >  2:3957072/1‑93 (MQ=255)
                                                                               ccTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCAATCTCTTCCTGa          <  2:5390436/93‑1 (MQ=255)
                                                                                cTAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCAATCTCTTCCTGAt         >  1:2573975/1‑93 (MQ=255)
                                                                                 tAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCAATCTCTTCCTGATa        <  1:2634678/93‑1 (MQ=255)
                                                                                 tAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCAATCTCTTCCTGATa        >  2:5234339/1‑93 (MQ=255)
                                                                                 tAAATCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCAATCTCTTCCTGATa        >  1:5219544/1‑93 (MQ=255)
                                                                                  aaaTCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCAATCTCTTCCTGATAg       <  2:4979684/93‑1 (MQ=255)
                                                                                  aaaTCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCAATCTCTTCCTGATAg       <  2:2158355/93‑1 (MQ=255)
                                                                                     tCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCAATCTCTTCCTGATAGTTa    <  1:3258024/93‑1 (MQ=255)
                                                                                     tCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCAATCTCTTCCTGATAGTTa    >  2:1478808/1‑93 (MQ=255)
                                                                                     tCGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCAATCTCTTCCTGATAGTTa    <  2:4323624/93‑1 (MQ=255)
                                                                                      cGGTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCAATCTCTTCCTGATAGTTAt   <  1:539268/93‑1 (MQ=255)
                                                                                       ggTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGCGAGCCAATCTCTTCCTGATAGTTAtt  >  1:3623574/1‑93 (MQ=255)
                                                                                       ggTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCAATCTCTTCCTGATAGTTAtt  <  1:6121492/93‑1 (MQ=255)
                                                                                       ggTTGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCAATCTCTTCCTGATAGTTAtt  >  1:5828484/1‑93 (MQ=255)
                                                                                          |                                                                                         
CGTGGTAATCAGCGTCGCGACCTGGTCCTCACTGCCGCTGTCTGGCAGCTGGCTTTCACTGTTTAAAATCAGCGTATGGCCTAAATCGGTCGCGCGGTTAATCTTGCTGATTAAAAAACCAGCGATAACCGGAGATTTGATCTTACCCAGCAGAGAGCCAATCTCTTCCTGATAGTTATT  >  NC_000913/4347927‑4348106

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: