BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	963,286	A→G	H79R (CAC→CGC)	himD →	integration host factor beta subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	963,286	0	A	G	100.0%	635.2 / NA	201	H79R (CAC→CGC)	himD	integration host factor beta subunit
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (81/120); total (81/120)

Only 100 of 205 total aligned reads displayed.

GCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCACTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTCG  >  NC_000913/963196‑963375

   gTTTCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTa                                                                                       >  1:6921022/1‑93 (MQ=255)

    tttCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTaa                                                                                      >  1:423799/1‑93 (MQ=255)

       ctctTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAAcc                                                                                   <  1:4144711/93‑1 (MQ=255)

        tctTTGCACTGCCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑t                                                                                 <  1:4394764/93‑1 (MQ=255)

          tttGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑Tgg                                                                               <  1:6799225/93‑1 (MQ=255)

              cACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTaaa                                                                           <  2:1969700/93‑1 (MQ=255)

              cACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTaaa                                                                           <  1:3526133/93‑1 (MQ=255)

              cACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTaaa                                                                           <  2:5315740/93‑1 (MQ=255)

              cACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTaaa                                                                           >  1:5805984/1‑93 (MQ=255)

                cTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGa                                                                         >  2:6070847/1‑93 (MQ=255)

                 tACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGaa                                                                        <  2:5268728/93‑1 (MQ=255)

                 tACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGaa                                                                        >  1:7741427/1‑93 (MQ=255)

                 tACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGaa                                                                        >  1:5763421/1‑93 (MQ=255)

                 tACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGaa                                                                        >  2:2570983/1‑93 (MQ=255)

                  aCCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAAc                                                                       >  1:5383040/1‑93 (MQ=255)

                   ccGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACt                                                                      <  1:4085017/93‑1 (MQ=255)

                    cgcgCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTg                                                                     >  1:6341516/1‑93 (MQ=255)

                     gcgcACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTgc                                                                    >  1:6642069/1‑93 (MQ=255)

                     gcgcACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTgc                                                                    >  1:4513860/1‑93 (MQ=255)

                        caccacGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGcgcg                                                                 >  2:6780257/1‑93 (MQ=255)

                          ccacGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGAt                                                               >  2:1909494/1‑93 (MQ=255)

                          ccacGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGAt                                                               <  1:6267686/93‑1 (MQ=255)

                           cacGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATc                                                              >  2:1753534/1‑93 (MQ=255)

                           cacGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATc                                                              <  1:1932222/93‑1 (MQ=255)

                            acGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATcg                                                             <  2:1534604/93‑1 (MQ=255)

                            acGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATcg                                                             >  1:314498/1‑93 (MQ=255)

                            acGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATcg                                                             <  2:2886947/93‑1 (MQ=255)

                             cGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATcgc                                                            <  2:7516274/93‑1 (MQ=255)

                                 ccGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCa                                                        >  1:2715000/1‑93 (MQ=255)

                                  cGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCaa                                                       <  1:2308173/93‑1 (MQ=255)

                                  cGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCaa                                                       <  1:2246479/93‑1 (MQ=255)

                                    gACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAA‑GAAAAAACCGTCCTCCCTTTTAACCTTGGTAAAAAATTCCGGGACGCCGCCAatt                                                     >  1:6185575/1‑92 (MQ=255)

                                      cGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATAtt                                                   <  2:1686596/93‑1 (MQ=255)

                                       gTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATAttt                                                  <  1:6968262/93‑1 (MQ=255)

                                        tAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTa                                                 >  2:377491/1‑93 (MQ=255)

                                         aaTCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTAc                                                <  2:1629361/93‑1 (MQ=255)

                                         aaTCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTAc                                                <  1:2202777/93‑1 (MQ=255)

                                           tCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACgg                                              <  2:2712600/93‑1 (MQ=255)

                                           tCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACgg                                              <  2:1783559/93‑1 (MQ=255)

                                            ccGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGt                                             <  2:6093586/93‑1 (MQ=255)

                                            ccGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGt                                             >  2:777094/1‑93 (MQ=255)

                                             cGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGtt                                            >  1:6411356/1‑93 (MQ=255)

                                             cGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGtt                                            <  1:2036134/93‑1 (MQ=255)

                                              gAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTa                                           >  2:4634978/1‑93 (MQ=255)

                                              gAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTa                                           <  1:4825238/93‑1 (MQ=255)

                                               aaGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTaa                                          <  1:6088/93‑1 (MQ=255)

                                                aGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAg                                         >  2:2168908/1‑93 (MQ=255)

                                                aGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAg                                         <  2:2577630/93‑1 (MQ=255)

                                                 gACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGt                                        <  2:5999169/93‑1 (MQ=255)

                                                 gACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGt                                        <  2:5211622/93‑1 (MQ=255)

                                                 gACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGt                                        >  1:3784703/1‑93 (MQ=255)

                                                 gACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGt                                        >  2:3861622/1‑93 (MQ=255)

                                                   cTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGttt                                      <  1:2896878/93‑1 (MQ=255)

                                                    tGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGtttt                                     >  1:1434944/1‑93 (MQ=255)

                                                    tGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGtttt                                     >  2:2807029/1‑93 (MQ=255)

                                                    tGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGtttt                                     >  1:2655554/1‑93 (MQ=255)

                                                    tGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGtttt                                     <  2:4818669/93‑1 (MQ=255)

                                                     ggCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGttttt                                    <  1:1531986/93‑1 (MQ=255)

                                                      gCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGtttttt                                   >  2:1258209/1‑93 (MQ=255)

                                                        gATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTAc                                 <  2:7175152/93‑1 (MQ=255)

                                                        gATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTAc                                 <  2:4165864/93‑1 (MQ=255)

                                                        gATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTAc                                 >  1:6473632/1‑93 (MQ=255)

                                                        gATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTAc                                 >  2:6650169/1‑93 (MQ=255)

                                                        gATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTAc                                 <  1:3686927/93‑1 (MQ=255)

                                                        gATAAAGTAGAACTGGAACGAAAATGCGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTAc                                 <  2:101778/93‑1 (MQ=255)

                                                             aGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCaaa                            >  1:1128532/1‑93 (MQ=255)

                                                              gTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAAc                           >  1:2061106/1‑93 (MQ=255)

                                                               tAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACt                          >  2:7405446/1‑93 (MQ=255)

                                                               tAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACt                          <  2:5603788/93‑1 (MQ=255)

                                                               tAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACt                          >  2:3199223/1‑93 (MQ=255)

                                                                aGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACtt                         <  1:336760/93‑1 (MQ=255)

                                                                 gAACTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTg                        <  1:6560476/93‑1 (MQ=255)

                                                                  aaCTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGa                       <  2:2279026/93‑1 (MQ=255)

                                                                   aCTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGaa                      <  1:2820748/93‑1 (MQ=255)

                                                                   aCTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGaa                      <  2:2275344/93‑1 (MQ=255)

                                                                   aCTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGaa                      <  1:2868171/93‑1 (MQ=255)

                                                                   aCTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGaa                      >  2:5289635/1‑93 (MQ=255)

                                                                   aCTGGAAGGAAAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGaa                      >  1:994036/1‑93 (MQ=255)

                                                                      ggaaggaaAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACga                   >  2:7301242/1‑93 (MQ=255)

                                                                      ggaaggaaAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACga                   <  1:6072883/93‑1 (MQ=255)

                                                                        aaggaaAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACgaga                 <  2:4570079/93‑1 (MQ=255)

                                                                         aggaaAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACgagag                >  2:2901723/1‑93 (MQ=255)

                                                                          ggaaAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATCTACGGTTAAGTTTTTTACTCAAACTTGAACgagaga               >  2:7026786/1‑93 (MQ=255)

                                                                           gaaAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGaa              >  2:4506398/1‑93 (MQ=255)

                                                                           gaaAATACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGaa              >  2:5731136/1‑93 (MQ=255)

                                                                            aaaaTACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGaaa             >  1:600554/1‑93 (MQ=255)

                                                                            aaaaTACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGaaa             >  1:3336731/1‑93 (MQ=255)

                                                                             aaaTACGTTCCTAGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGaaaa            <  2:4010965/93‑1 (MQ=255)

                                                                              aaTACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAg           <  1:1431831/93‑1 (MQ=255)

                                                                              aaTACGTGCCTCTCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAg           <  2:4891374/93‑1 (MQ=255)

                                                                               aTACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGc          <  1:1241363/93‑1 (MQ=255)

                                                                                tACGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTAAAATTTGAACGAGAGAAAAGCa         >  1:4597554/1‑93 (MQ=255)

                                                                                 aCGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCAc        <  1:5152593/93‑1 (MQ=255)

                                                                                 aCGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCAc        <  1:7897006/93‑1 (MQ=255)

                                                                                  cGTTCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCAcc       <  2:2778155/93‑1 (MQ=255)

                                                                                    ttCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTg     >  1:2560927/1‑93 (MQ=255)

                                                                                    ttCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTg     >  2:6351146/1‑93 (MQ=255)

                                                                                     tCCTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGt    >  1:7446286/1‑93 (MQ=255)

                                                                                      ccTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTc   <  1:7615532/93‑1 (MQ=255)

                                                                                       cTCGCTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTCg  >  1:6118034/1‑93 (MQ=255)

GCAGTTTCTCTTTGCACTACCGCGCACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCACTTTAAACC‑TGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTCG  >  NC_000913/963196‑963375

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`