Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 987,323 C→T A296T (GCC→ACC)  asnS ← asparagine tRNA synthetase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913987,3230CT99.2% 801.4 / ‑5.5 237A296T (GCC→ACC) asnSasparagine tRNA synthetase
Reads supporting (aligned to +/- strand):  ref base C (0/2);  new base T (116/119);  total (116/121)
Fisher's exact test for biased strand distribution p-value = 4.98e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.07e-01

Only 100 of 245 total aligned reads displayed.

TCCTGCCGCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGCATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCTTCAG  >  NC_000913/987233‑987412
                                                                                          |                                                                                         
tCCTGCCGCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTACAGACGTGAAACGGTAt                                                                                         >  2:482443/1‑93 (MQ=255)
 ccTGCCGCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATc                                                                                        <  2:6869059/93‑1 (MQ=255)
  cTGCCGCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCt                                                                                       <  2:7565983/93‑1 (MQ=255)
  cTGCCGCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCt                                                                                       >  1:905670/1‑93 (MQ=255)
   tGCCGCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGGTCAAGACGGGAAACGGCATCtt                                                                                      >  2:6051417/1‑93 (MQ=255)
   tGCCGCAGTGTTCGAGAATGGTCGCTGCGTCGGTATAAGCCACCTGCGCAAAATCGCCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCtt                                                                                      <  2:5388066/93‑1 (MQ=255)
    gCCGCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCttt                                                                                     <  2:5262669/93‑1 (MQ=255)
    gCCGCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCttt                                                                                     >  2:2487795/1‑93 (MQ=255)
     ccGCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTa                                                                                    >  1:5683654/1‑93 (MQ=255)
      cGCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTAt                                                                                   >  2:2856331/1‑93 (MQ=255)
       gCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATc                                                                                  <  1:1013962/93‑1 (MQ=255)
       gCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATc                                                                                  <  1:6907711/93‑1 (MQ=255)
        cAGTTTTCGAGAATGGTCACTGCGGCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCt                                                                                 >  1:4145149/1‑93 (MQ=255)
          gTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTAc                                                                               <  2:7852483/93‑1 (MQ=255)
           ttttCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTAcg                                                                              >  1:7484639/1‑93 (MQ=255)
           ttttCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTAcg                                                                              >  1:5076437/1‑93 (MQ=255)
           ttttCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTAcg                                                                              >  1:4982758/1‑93 (MQ=255)
             ttCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTAcgcg                                                                            >  1:6147817/1‑93 (MQ=255)
               cGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGCATCTTTATCTACGCGtt                                                                          <  1:4621144/93‑1 (MQ=255)
                gagaATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTc                                                                         <  1:7233451/93‑1 (MQ=255)
                 agaATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCa                                                                        <  1:5210356/93‑1 (MQ=255)
                  gaATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAg                                                                       >  2:3133574/1‑93 (MQ=255)
                     tGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCga                                                                    >  1:4789123/1‑93 (MQ=255)
                       gTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCgaag                                                                  >  2:6274035/1‑93 (MQ=255)
                        tCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCgaaga                                                                 <  2:2604049/93‑1 (MQ=255)
                        tCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCgaaga                                                                 <  1:6338835/93‑1 (MQ=255)
                        tCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCgaaga                                                                 >  2:4602263/1‑93 (MQ=255)
                         cACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCgaagaa                                                                <  2:7145438/93‑1 (MQ=255)
                         cACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCgaagaa                                                                <  2:4001769/93‑1 (MQ=255)
                         cACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCgaagaa                                                                >  1:3129540/1‑93 (MQ=255)
                          aCTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAAt                                                               >  2:571692/1‑93 (MQ=255)
                             gCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTc                                                            <  2:3447125/93‑1 (MQ=255)
                              cGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCa                                                           >  2:120621/1‑93 (MQ=255)
                               gTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCAt                                                          <  1:4234839/93‑1 (MQ=255)
                                  ggTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATgtc                                                       <  1:5028803/93‑1 (MQ=255)
                                  ggTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATgtc                                                       <  2:4385937/93‑1 (MQ=255)
                                  ggTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATgtc                                                       <  1:2583501/93‑1 (MQ=255)
                                  ggTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATgtc                                                       >  2:7431638/1‑93 (MQ=255)
                                  ggTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATgtc                                                       <  1:3994339/93‑1 (MQ=255)
                                  ggTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATgtc                                                       <  2:1710185/93‑1 (MQ=255)
                                  ggTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATgtc                                                       >  2:1309292/1‑93 (MQ=255)
                                   gTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATgtcg                                                      >  2:5192965/1‑93 (MQ=255)
                                    tataATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATgtcgt                                                     >  2:6372409/1‑93 (MQ=255)
                                     ataATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATgtcgtc                                                    <  2:3853472/93‑1 (MQ=255)
                                     ataATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATgtcgtc                                                    <  2:4323956/93‑1 (MQ=255)
                                      taATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCa                                                   <  2:1986933/93‑1 (MQ=255)
                                       aaTCCACCTGCGCCAAATCGGCTTCCATGAAGCGTTCCAGACGTGAAACGGGATATTTATCTACGCGTTCCGCGAAGAATTTCATGTAGTCAg                                                  >  1:4787246/1‑93 (MQ=255)
                                       aaTCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAg                                                  >  1:1268887/1‑93 (MQ=255)
                                        aTCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAgc                                                 >  1:2258106/1‑93 (MQ=255)
                                         tCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAgcg                                                >  2:6494251/1‑93 (MQ=255)
                                           cACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGcgcg                                              >  1:3631854/1‑93 (MQ=255)
                                           cACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGcgcg                                              >  1:2338911/1‑93 (MQ=255)
                                            aCCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGt                                             <  2:346155/93‑1 (MQ=255)
                                             ccTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGtt                                            >  1:1365464/1‑93 (MQ=255)
                                              cTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGttc                                           <  1:4631108/93‑1 (MQ=255)
                                              cTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGttc                                           <  1:6457077/93‑1 (MQ=255)
                                               tGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGttct                                          >  2:6774993/1‑93 (MQ=255)
                                                 cgcAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGttcttc                                        >  2:2546991/1‑93 (MQ=255)
                                                  gcAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCg                                       <  1:6694755/93‑1 (MQ=255)
                                                    aataTCGGCTTCAATGAAGCGTTCCAGACGTGACACGGTGTCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCgag                                     <  2:7023748/90‑1 (MQ=255)
                                                    aaaaTCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCgag                                     >  2:144533/1‑93 (MQ=255)
                                                    aaaaTCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCgag                                     >  1:2524107/1‑93 (MQ=255)
                                                    aaaaTCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCATCgag                                     >  2:7260297/1‑93 (MQ=255)
                                                     aaaTCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCgaga                                    >  2:3213664/1‑93 (MQ=255)
                                                      aaTCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGaa                                   <  1:2523615/93‑1 (MQ=255)
                                                      aaTCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGaa                                   <  1:2549935/93‑1 (MQ=255)
                                                      aaTCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGaa                                   <  1:5805255/93‑1 (MQ=255)
                                                       aTCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAAc                                  <  1:5163574/93‑1 (MQ=255)
                                                        tCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAAcc                                 >  1:7678006/1‑93 (MQ=255)
                                                          ggCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGc                               <  1:7189863/93‑1 (MQ=255)
                                                           gCTTCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCt                              >  1:4445315/1‑93 (MQ=255)
                                                             ttCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCttt                            >  2:113801/1‑93 (MQ=255)
                                                             ttCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCttt                            <  1:3298552/93‑1 (MQ=255)
                                                             ttCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCttt                            >  1:3191496/1‑93 (MQ=255)
                                                              tCAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTg                           >  1:7519046/1‑93 (MQ=255)
                                                               cAATGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGa                          <  2:7054293/93‑1 (MQ=255)
                                                                  tGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGa                       >  1:5514058/1‑93 (MQ=255)
                                                                  tGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGa                       <  2:3072137/93‑1 (MQ=255)
                                                                  tGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGa                       >  1:2908441/1‑93 (MQ=255)
                                                                  tGAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGa                       >  1:6089052/1‑93 (MQ=255)
                                                                  agAAGCGGTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGa                       <  1:5312182/92‑1 (MQ=255)
                                                                   gAAGCGTTCCAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGAc                      >  1:1800726/1‑93 (MQ=255)
                                                                           ccAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCa              <  1:1278735/93‑1 (MQ=255)
                                                                           ccAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCa              <  1:5897330/93‑1 (MQ=255)
                                                                           ccAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCa              <  1:5709745/93‑1 (MQ=255)
                                                                            cAGACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAg             >  1:72712/1‑93 (MQ=255)
                                                                              gACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCa           >  1:1851246/1‑93 (MQ=255)
                                                                              gACGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCa           >  2:1378844/1‑93 (MQ=255)
                                                                               aCGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCAt          <  1:3773806/93‑1 (MQ=255)
                                                                               aCGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCAt          <  2:5076436/93‑1 (MQ=255)
                                                                                cGTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATg         >  2:2371734/1‑93 (MQ=255)
                                                                                 gTGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATgg        >  1:1487664/1‑93 (MQ=255)
                                                                                 gTGAAACGGTACCTTTATCTACGCGTTCAGCGAATAATTTCCTGTCGTCAGCGCGTTCGTCGAGAACCGCTTTGAAGACATATTTCAGCATgg        <  1:2717340/93‑1 (MQ=255)
                                                                                  tGAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGc       <  1:3251354/93‑1 (MQ=255)
                                                                                   gAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCt      >  2:326827/1‑93 (MQ=255)
                                                                                   gAAACGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCt      <  1:6044835/93‑1 (MQ=255)
                                                                                     aaCGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCTTc    <  1:7630953/93‑1 (MQ=255)
                                                                                     aaCGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCTTc    <  1:7430217/93‑1 (MQ=255)
                                                                                     aaCGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCTTc    <  2:771320/93‑1 (MQ=255)
                                                                                       cGGTATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCTTCAg  <  2:6857298/93‑1 (MQ=255)
                                                                                          |                                                                                         
TCCTGCCGCAGTTTTCGAGAATGGTCACTGCGTCGGTATAATCCACCTGCGCAAAATCGGCTTCAATGAAGCGTTCCAGACGTGAAACGGCATCTTTATCTACGCGTTCAGCGAAGAATTTCATGTCGTCAGCGCGTTCTTCGAGAACCGCTTTGAAGACATATTTCAGCATGGCTTCAG  >  NC_000913/987233‑987412

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: