Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 998,433 A→G intergenic (+19/‑6) ycbR → / → ycbS putative chaperone/putative outer membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913998,4330AG98.0% 464.5 / NA 154intergenic (+19/‑6)ycbR/ycbSputative chaperone/putative outer membrane protein
Reads supporting (aligned to +/- strand):  ref base A (3/0);  new base G (96/54);  total (100/54)
Fisher's exact test for biased strand distribution p-value = 5.52e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 164 total aligned reads displayed.

AATAGCAGCGTAACGTATCGAACCATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGAGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCG  >  NC_000913/998343‑998522
                                                                                           |                                                                                         
aaTAGCAGCGTAACGTATCGAACCATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGc                                                                                         <  2:6404859/93‑1 (MQ=255)
    gcagcGTAACGTATCGAACCATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCTGAAGCCGTCTTCAGTTAAGAGGGCgaga                                                                                     >  2:2605182/1‑93 (MQ=255)
    gcagcGTAACGTATCGAACCATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCgaga                                                                                     <  2:4218265/93‑1 (MQ=255)
          tAACGTATCGAACCATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGtata                                                                               >  1:1238360/1‑93 (MQ=255)
           aaCGTAACGAACCATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAg                                                                              <  2:5695750/93‑1 (MQ=255)
            aCGTATCGAACCATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGa                                                                             >  1:2399141/1‑93 (MQ=255)
              gTATCGAACCATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAACTCGTATGCCGTCTTCTGCTTGGAAGGCGAGATGTATAGAAc                                                                           >  1:4962947/1‑93 (MQ=255)
              gTATCGAACCATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAAc                                                                           >  1:2466253/1‑93 (MQ=255)
              gTATCGAACCATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAAc                                                                           >  1:2466252/1‑93 (MQ=255)
              gTATCGAACCATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGAGAGATGTATAGAAc                                                                           >  2:5701325/1‑93 (MQ=255)
                aTCGAACCATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTc                                                                         >  2:900836/1‑93 (MQ=255)
                 tCGAACCATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCa                                                                        <  2:4833518/93‑1 (MQ=255)
                 tCGAACCATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCa                                                                        <  2:195418/93‑1 (MQ=255)
                  cGAACCATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTATCTCGTATGCCGTCTTCTGCTTGAAAAGAGAGATGTATAGAACTCAt                                                                       >  1:5220676/1‑93 (MQ=255)
                   gAACCATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATc                                                                      >  2:6258839/1‑93 (MQ=255)
                   gAACCATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATc                                                                      <  1:6644464/93‑1 (MQ=255)
                    aaCCATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCg                                                                     <  1:700799/93‑1 (MQ=255)
                     aCCATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGa                                                                    >  2:1213302/1‑93 (MQ=255)
                      ccATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTATGCCGTCTTCAGCTAGGAGGGCGAGATGTATAGAACTCATCGac                                                                   >  1:2670432/1‑93 (MQ=255)
                      ccATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGac                                                                   <  2:7514769/93‑1 (MQ=255)
                       cATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGAGCGAGATGTATAGAACTCATCGaca                                                                  >  1:3845410/1‑93 (MQ=255)
                         tCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTATCTCGTAAGCCGTCTTCTGCTTGGAGAACGAGATGTATAGAACTCATCGacaac                                                                >  1:1475283/1‑93 (MQ=255)
                           aaTGCCTCCGGGGCGAAAACGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAacac                                                              <  2:1433983/93‑1 (MQ=255)
                             tGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAg                                                            >  2:6529089/1‑93 (MQ=255)
                              gACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGc                                                           >  1:6738436/1‑93 (MQ=255)
                               aCTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGcc                                                          >  2:6852036/1‑93 (MQ=255)
                                cTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCt                                                         <  1:6098071/93‑1 (MQ=255)
                                 tACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTATGCCGTCTTCTGCTTGAAAGGAGAGATGTATAGAACTCATCGACAACACAGCCTg                                                        >  1:3647051/1‑93 (MQ=255)
                                  aCGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGt                                                       <  2:7307235/93‑1 (MQ=255)
                                   cGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGtt                                                      >  2:7862350/1‑93 (MQ=255)
                                     gggCGGAAACGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTaa                                                    >  1:4740424/1‑93 (MQ=255)
                                          gAAACGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGctct                                               >  1:4092336/1‑93 (MQ=255)
                                          gAAACGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGctct                                               >  1:7164809/1‑93 (MQ=255)
                                          gAAACGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGctct                                               >  2:4341198/1‑93 (MQ=255)
                                            aaCCCCCCAGCTCAACTGTAAATCGTAAGCGGTCTGCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCCGTTAAGCTCtgg                                             <  2:7164158/93‑1 (MQ=255)
                                             aCGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCtggt                                            <  2:3811035/93‑1 (MQ=255)
                                                ccgcAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGa                                         <  2:5110625/93‑1 (MQ=255)
                                                ccgcAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGa                                         >  1:6510432/1‑93 (MQ=255)
                                                 cgcAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAg                                        >  2:2310531/1‑93 (MQ=255)
                                                  gcAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGt                                       <  2:5870450/93‑1 (MQ=255)
                                                  gcAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGt                                       <  2:2400761/93‑1 (MQ=255)
                                                  gcAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGt                                       >  2:1355959/1‑93 (MQ=255)
                                                   caactcaactGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTg                                      >  2:2876072/1‑93 (MQ=255)
                                                    aactcaactGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAgcgc                                     <  1:5082321/93‑1 (MQ=255)
                                                    aactcaactGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGc                                     >  2:7718768/1‑93 (MQ=255)
                                                    aactcaactGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGc                                     >  2:2400617/1‑93 (MQ=255)
                                                     actcaactGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGcc                                    >  2:5561327/1‑93 (MQ=255)
                                                      ctcaactGTAAATCGTAAGCCGTCTTCAGCTAAGAGGGCGAGACGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGCGCCa                                   >  1:1127299/1‑93 (MQ=255)
                                                       tcaactGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCAt                                  <  1:4562579/93‑1 (MQ=255)
                                                       tcaactGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCAt                                  >  1:3301787/1‑93 (MQ=255)
                                                       tcaactGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCAt                                  >  2:2473177/1‑93 (MQ=255)
                                                       tcaactGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCAt                                  <  1:7574503/93‑1 (MQ=255)
                                                        caactGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATc                                 <  1:1082485/93‑1 (MQ=255)
                                                         agctGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCg                                <  2:7002561/91‑1 (MQ=255)
                                                          actGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGt                               >  1:1953982/1‑93 (MQ=255)
                                                          actGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGt                               >  1:4783368/1‑93 (MQ=255)
                                                          actGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGt                               >  1:1893200/1‑93 (MQ=255)
                                                          actGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGt                               <  1:5011663/93‑1 (MQ=255)
                                                            tGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGttt                             >  1:5858310/1‑93 (MQ=255)
                                                            tGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGttt                             >  1:4953483/1‑93 (MQ=255)
                                                            tGTAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGttt                             >  2:1538380/1‑93 (MQ=255)
                                                              tAAATCTTAAGCCGGCTTCAGTTAAGAGGGCGAGAGGGATAGAACTCACCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCACCGTTTAt                           >  1:6038079/1‑93 (MQ=255)
                                                              tAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTAt                           <  1:85746/93‑1 (MQ=255)
                                                              tAAATCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTGAt                           <  2:5166749/93‑1 (MQ=255)
                                                               aaaTCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTAtt                          <  2:6405966/93‑1 (MQ=255)
                                                               aaaTCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTAtt                          <  1:4108537/93‑1 (MQ=255)
                                                                aaTCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATtg                         <  2:2650309/93‑1 (MQ=255)
                                                                aaTCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATtg                         >  2:2821528/1‑93 (MQ=255)
                                                                  tCGTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATtggt                       >  2:7319339/1‑93 (MQ=255)
                                                                    gTAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATtggtgg                     <  2:3304040/93‑1 (MQ=255)
                                                                    gTAAGCCGTCTTCAGTTAAGAGGGAGAGATGTATAGAACTCATCGACAACACAGCCTGTTTAGCTCTGGTGGAGTGCCATCGTTTATtggtgg                     >  1:483764/1‑93 (MQ=255)
                                                                     tAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTggg                    <  2:6424628/93‑1 (MQ=255)
                                                                     tAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTggg                    >  1:5652681/1‑93 (MQ=255)
                                                                     tAAGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTggg                    >  2:1102563/1‑93 (MQ=255)
                                                                      aaGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGc                   <  2:3206030/93‑1 (MQ=255)
                                                                       aGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAATTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCt                  >  1:1672044/1‑93 (MQ=255)
                                                                       aGCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCt                  >  1:7721159/1‑93 (MQ=255)
                                                                        gCCGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGGGGGCtg                 >  1:5480048/1‑93 (MQ=255)
                                                                          cGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCtggg               >  2:2154995/1‑92 (MQ=255)
                                                                          cGTCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCtggg               >  2:2964381/1‑92 (MQ=255)
                                                                           ttCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCtggtg              >  1:5149678/2‑93 (MQ=255)
                                                                            tCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAATACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCtggtgg             >  2:4529935/1‑93 (MQ=255)
                                                                            tCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGTGGGAGTGCCATCGTTTATTGGTGGGCtggtgg             >  1:7898569/1‑93 (MQ=255)
                                                                            tCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCtggtgg             >  1:4319244/1‑93 (MQ=255)
                                                                            tCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCtggtgg             >  1:3610858/1‑93 (MQ=255)
                                                                            tCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCtggtgg             >  1:3896376/1‑93 (MQ=255)
                                                                            tCTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCtggtgg             >  2:2991560/1‑93 (MQ=255)
                                                                             cTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTggtggt            >  2:1011736/1‑93 (MQ=255)
                                                                             cTTCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTggtggt            >  2:4147410/1‑93 (MQ=255)
                                                                              ttCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGgtggtg           >  2:5948444/1‑93 (MQ=255)
                                                                              ttCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGgtggtg           >  1:306760/1‑93 (MQ=255)
                                                                              ttCAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGgtggtg           >  2:13872/1‑93 (MQ=255)
                                                                              gtCAGTTAAGAGTGCGAGATGTATAGAACTCATCGACAACGCAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGgtggtg           <  2:5918472/92‑1 (MQ=255)
                                                                                cAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGtt         <  1:968354/93‑1 (MQ=255)
                                                                                cAGTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGtt         <  2:4853810/93‑1 (MQ=255)
                                                                                  gTTAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTtg       >  1:3882314/1‑93 (MQ=255)
                                                                                    ttAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGGGTTtgt      >  1:6210852/1‑93 (MQ=255)
                                                                                     tAAGAGGGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTtgtg     >  1:5881736/1‑93 (MQ=255)
                                                                                        gagggCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCg  >  2:3029132/1‑93 (MQ=255)
                                                                                        gagggCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCg  >  2:7553408/1‑93 (MQ=255)
                                                                                           |                                                                                         
AATAGCAGCGTAACGTATCGAACCATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAAGCCGTCTTCAGTTAAGAGAGCGAGATGTATAGAACTCATCGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGTGTCG  >  NC_000913/998343‑998522

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: