BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,053,401	T→C	A657A (GCA→GCG)	torS ←	TorS

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,053,401	0	T	C	99.5%	583.2 / ‑5.1	189	A657A (GCA→GCG)	torS	TorS
Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (98/90); total (98/91)
Fisher's exact test for biased strand distribution p-value = 4.81e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.43e-01

Only 100 of 203 total aligned reads displayed.

GGTAATTCGCTGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGTGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTG  >  NC_000913/1053311‑1053490

   aaTTCGCTGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCACCTGATTGACTGTTTTTGGCACGGGCGCCGt                                                                                      <  2:1482868/93‑1 (MQ=255)

      tCGCTGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGc                                                                                   <  2:378801/93‑1 (MQ=255)

          tGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAACCCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAaca                                                                               <  2:5302867/93‑1 (MQ=255)

           gggTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAacac                                                                              >  2:2209794/1‑93 (MQ=255)

           gggTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAacac                                                                              >  1:2964374/1‑93 (MQ=255)

             gTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGt                                                                            <  2:5684247/93‑1 (MQ=255)

              ttAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGTAACACGTa                                                                           >  2:6548637/1‑93 (MQ=255)

              ttAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTa                                                                           >  2:6068065/1‑93 (MQ=255)

              ttAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTa                                                                           <  1:7621904/93‑1 (MQ=255)

               tAGCGGGTTATCTTCAATTTACAGCAAACGTATACCGTCAAGACGCATCGCCTGATTGACTGTTTTTGGTTCGGGCGCCGTGGCAACACGTaa                                                                          >  1:7001242/1‑93 (MQ=255)

               tAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTaa                                                                          <  2:2138773/93‑1 (MQ=255)

                aGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAAc                                                                         <  2:566679/93‑1 (MQ=255)

                 gCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACg                                                                        >  1:1461415/1‑93 (MQ=255)

                 gCGGGGTATCTTCAATGAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACg                                                                        <  2:1655918/93‑1 (MQ=255)

                    ggTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCa                                                                     >  2:2820120/1‑93 (MQ=255)

                    ggTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCa                                                                     <  2:6575949/93‑1 (MQ=255)

                     gTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCaa                                                                    <  2:6165002/93‑1 (MQ=255)

                      ttATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAg                                                                   >  2:1416384/1‑93 (MQ=255)

                        aTCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCg                                                                 >  2:4865656/1‑93 (MQ=255)

                         tCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGt                                                                >  1:356027/1‑93 (MQ=255)

                         tCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGt                                                                >  2:5112610/1‑93 (MQ=255)

                         tCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGt                                                                >  2:5263784/1‑93 (MQ=255)

                         tCTTCAATGAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGt                                                                <  2:6689812/93‑1 (MQ=255)

                          cTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTa                                                               <  2:5503098/93‑1 (MQ=255)

                          cTTCAATTAACAGCAAACGTAAACCGGCAAGACGCACCGCCTGATTGACTGTTTCTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCgca                                                               >  2:7018612/1‑91 (MQ=255)

                           ttCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTaa                                                              >  1:499055/1‑93 (MQ=255)

                           ttCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTaa                                                              >  1:6851115/1‑93 (MQ=255)

                            tCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTaaa                                                             <  1:4065941/93‑1 (MQ=255)

                            tCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTaaa                                                             >  1:6812017/1‑93 (MQ=255)

                             cAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAAc                                                            <  1:3365872/93‑1 (MQ=255)

                             cAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAAc                                                            <  2:1177173/93‑1 (MQ=255)

                                ttAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACaaa                                                         <  2:5210969/93‑1 (MQ=255)

                                 tAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACaaaa                                                        >  1:4391961/1‑93 (MQ=255)

                                  aaCAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACaaaaa                                                       <  2:3544749/93‑1 (MQ=255)

                                  aaCAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACaaaaa                                                       <  2:6031978/93‑1 (MQ=255)

                                  aaCAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACaaaaa                                                       >  1:1049953/1‑93 (MQ=255)

                                  aaCAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACaaaaa                                                       <  1:3120219/93‑1 (MQ=255)

                                  aaCAGCAAACGTAAACCGTCAAGACGCACCGCCCGATTGACTGTTTTTGGCAGGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACaaaaa                                                       <  1:4095043/93‑1 (MQ=255)

                                    cAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACa                                                     <  1:925387/93‑1 (MQ=255)

                                    cAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACa                                                     <  1:4179902/93‑1 (MQ=255)

                                     aGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAg                                                    >  2:2641238/1‑93 (MQ=255)

                                      gCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGc                                                   <  1:521867/93‑1 (MQ=255)

                                        aaaCGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCtt                                                 >  2:3640366/1‑93 (MQ=255)

                                        aaaCGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCtc                                                 >  1:1570453/1‑92 (MQ=255)

                                         aaCGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTc                                                <  2:4474832/93‑1 (MQ=255)

                                          aCGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTcc                                               <  1:1781576/93‑1 (MQ=255)

                                           cGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCa                                              >  1:7062465/1‑93 (MQ=255)

                                             tAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAAc                                            >  2:5590804/1‑93 (MQ=255)

                                             tAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGAACGGGCGCCGTGGCAAGACGTAACGGCAAGAGTAAACAAAAACAGTTTCCAAc                                            >  1:2509794/1‑93 (MQ=255)

                                             tAAACCGTAAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAAc                                            >  2:1591856/1‑93 (MQ=255)

                                                aCCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTc                                         >  2:5395538/1‑93 (MQ=255)

                                                 ccGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTcc                                        >  2:4545380/1‑93 (MQ=255)

                                                  cGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCg                                       >  1:4631000/1‑93 (MQ=255)

                                                   gTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTACgg                                      >  1:7529628/1‑93 (MQ=255)

                                                    tCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGc                                     >  2:6733610/1‑93 (MQ=255)

                                                    tCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGc                                     <  1:2845425/93‑1 (MQ=255)

                                                    tCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGc                                     >  2:76901/1‑93 (MQ=255)

                                                    tCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGc                                     >  2:4259348/1‑93 (MQ=255)

                                                    tCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGc                                     >  1:574427/1‑93 (MQ=255)

                                                    tCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGc                                     >  1:2087623/1‑93 (MQ=255)

                                                     cAATACGCACCGCCGGATTGACTGTTTTTCGCTCGGGCGCCGTGGCAACCCGTAACGGCCAGCGTAAACAAAAACAGCTTCCACCCTCCGGCg                                    <  2:1035477/93‑1 (MQ=255)

                                                      aaGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGt                                   <  1:6365586/93‑1 (MQ=255)

                                                       aGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTg                                  >  2:1327306/1‑93 (MQ=255)

                                                       aGACGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTg                                  >  1:6142154/1‑93 (MQ=255)

                                                         aCGCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCt                                >  2:7358986/1‑93 (MQ=255)

                                                           gCACCGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCtgg                              >  2:5531568/1‑93 (MQ=255)

                                                              ccGCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCtggtgg                           >  2:1974167/1‑93 (MQ=255)

                                                                gCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGgcg                         >  1:2304808/1‑93 (MQ=255)

                                                                gCCTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGgcg                         >  2:6970889/1‑93 (MQ=255)

                                                                  cTGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTATACAAAAACAGCTTCCAAGCTCCGGCGTGCTGGTGGCGCt                       >  1:3983119/1‑93 (MQ=255)

                                                                   tGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTc                      <  1:5859418/93‑1 (MQ=255)

                                                                   tGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTc                      >  1:1009047/1‑93 (MQ=255)

                                                                   tGATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTc                      >  1:3747298/1‑93 (MQ=255)

                                                                    gATTGACTGTTTTTGGCACGGGGGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCa                     <  1:5530030/93‑1 (MQ=255)

                                                                    gATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCa                     <  2:813131/93‑1 (MQ=255)

                                                                    gATTGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCa                     >  2:4269684/1‑93 (MQ=255)

                                                                    gATTGACTGTTTTGGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCa                     <  2:7839300/93‑1 (MQ=255)

                                                                       tGACTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGtt                  >  1:2710148/1‑93 (MQ=255)

                                                                        gACTGTTTCTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTc                 <  2:2712827/93‑1 (MQ=255)

                                                                          cTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTcgc               >  1:1935191/1‑93 (MQ=255)

                                                                          cTGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTcgc               >  2:2267360/1‑93 (MQ=255)

                                                                           tGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTcgcc              >  1:726981/1‑93 (MQ=255)

                                                                           tGTTTTTGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTcgcc              >  1:1654951/1‑93 (MQ=255)

                                                                           cttttttGGCACGGGGGCCCTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTcgcc              <  1:4305234/91‑1 (MQ=255)

                                                                               tttGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGccc          <  1:2782305/93‑1 (MQ=255)

                                                                                ttGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCa         <  2:6265626/93‑1 (MQ=255)

                                                                                ttGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCa         >  2:7735181/1‑93 (MQ=255)

                                                                                ttGGCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCa         <  1:6433599/93‑1 (MQ=255)

                                                                                  ggCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATc       <  1:5986560/93‑1 (MQ=255)

                                                                                  ggCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGAGTGCTGGTGGCGCTCAGTTCGCCGCCCATc       >  2:6834500/1‑93 (MQ=255)

                                                                                   gCACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCg      >  1:1143643/1‑93 (MQ=255)

                                                                                    cACGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCATCCTCCGGCGTGCTGGTGGCGCTTAGTTCGCCGCCCATCGc     <  2:5792150/93‑1 (MQ=255)

                                                                                     aCGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGcc    <  1:5154630/93‑1 (MQ=255)

                                                                                     aCGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGcc    <  1:6962100/93‑1 (MQ=255)

                                                                                      cGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCt   >  2:3040216/1‑93 (MQ=255)

                                                                                      cGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCt   <  2:1080476/93‑1 (MQ=255)

                                                                                      cGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCt   <  2:7151378/93‑1 (MQ=255)

                                                                                      cGGGCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCt   >  2:3916870/1‑93 (MQ=255)

                                                                                       gggCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTg  <  1:1820813/93‑1 (MQ=255)

                                                                                       gggCGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTg  <  2:3523243/93‑1 (MQ=255)

GGTAATTCGCTGGGTTAGCGGGTTATCTTCAATTAACAGCAAACGTAAACCGTCAAGACGCACCGCCTGATTGACTGTTTTTGGCACGGGTGCCGTGGCAACACGTAACGGCAAGCGTAAACAAAAACAGCTTCCAACCTCCGGCGTGCTGGTGGCGCTCAGTTCGCCGCCCATCGCCTG  >  NC_000913/1053311‑1053490

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`