BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,102,451	A→G	intergenic (‑32/+435)	csgD ← / ← b4518	CsgD/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,102,451	0	A	G	100.0%	701.8 / NA	219	intergenic (‑32/+435)	csgD/b4518	CsgD/hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (110/109); total (110/109)

Only 100 of 228 total aligned reads displayed.

AGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTA  >  NC_000913/1102360‑1102540

 gaagaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGcc                                                                                         >  1:5838632/1‑93 (MQ=255)

 gaagaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGcc                                                                                         <  1:1750894/93‑1 (MQ=255)

  aagaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCt                                                                                        >  2:3890430/1‑93 (MQ=255)

  aagaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCt                                                                                        <  2:3006551/93‑1 (MQ=255)

  aagaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCt                                                                                        <  1:341204/93‑1 (MQ=255)

    gaTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGa                                                                                      >  2:7812740/1‑93 (MQ=255)

     aTTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGAc                                                                                     <  1:5696351/93‑1 (MQ=255)

         aGTGATCAACAATAATGTATGACCATGAAGACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCt                                                                                 <  1:1096718/93‑1 (MQ=255)

          gTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTg                                                                                <  2:1155555/93‑1 (MQ=255)

            gATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGcc                                                                              <  1:6842443/93‑1 (MQ=255)

              tCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCctc                                                                            <  1:2432984/93‑1 (MQ=255)

                aacaaTAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTa                                                                          >  1:4962672/1‑93 (MQ=255)

                 acaaTAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTaa                                                                         >  2:3160539/1‑93 (MQ=255)

                  caaTAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTaaa                                                                        >  2:6544151/1‑93 (MQ=255)

                   aataatGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTaaaa                                                                       >  1:1061108/1‑93 (MQ=255)

                   aataatGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTaaaa                                                                       >  1:1612856/1‑93 (MQ=255)

                    ataatGTATGACCATGAATACTATGGACTTCATTAAACATGATGAACCCCCGC‑TTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATa                                                                     <  2:7376336/93‑1 (MQ=255)

                    ataatGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAAt                                                                      >  1:3900530/1‑93 (MQ=255)

                     taatGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATa                                                                     >  1:5863741/1‑93 (MQ=255)

                     taatGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATa                                                                     >  2:5713591/1‑93 (MQ=255)

                      aatgaatgACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAg                                                                    <  1:6283184/93‑1 (MQ=255)

                      aatGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAg                                                                    <  2:5974310/93‑1 (MQ=255)

                        tGTATGACCATGAATACTATGGACTTCGTTAAACATGATGAACCCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGaa                                                                  <  1:7127326/93‑1 (MQ=255)

                        tGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAATATAGaa                                                                  <  2:7786348/93‑1 (MQ=255)

                        tGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGaa                                                                  >  2:4135512/1‑93 (MQ=255)

                         gTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAg                                                                 <  1:2989951/93‑1 (MQ=255)

                          tATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGc                                                                >  1:2372180/1‑93 (MQ=255)

                           aTGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCa                                                               >  2:2077694/1‑93 (MQ=255)

                             gACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCAcc                                                             <  1:960657/93‑1 (MQ=255)

                             gACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGC‑TTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCa                                                            <  1:1490967/93‑1 (MQ=255)

                              aCCATGAATACTATGGACTTCATTAAACATTATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCa                                                            <  2:3522643/93‑1 (MQ=255)

                              aCCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCa                                                            <  2:6719058/93‑1 (MQ=255)

                                cATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGa                                                          >  1:7824922/1‑93 (MQ=255)

                                cATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGa                                                          >  1:2796084/1‑93 (MQ=255)

                                 aTGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGaa                                                         >  2:4061366/1‑93 (MQ=255)

                                  tGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGACGCACCAGAAg                                                        <  2:5095617/93‑1 (MQ=255)

                                  tGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAg                                                        >  2:5557628/1‑93 (MQ=255)

                                  tGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAg                                                        <  2:1609814/93‑1 (MQ=255)

                                  tGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAg                                                        >  2:2893336/1‑93 (MQ=255)

                                  tGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAg                                                        >  1:5330983/1‑93 (MQ=255)

                                   gAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGt                                                       >  2:7184318/1‑93 (MQ=255)

                                      tACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACt                                                    >  2:7671748/1‑93 (MQ=255)

                                      tACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACt                                                    >  2:1420756/1‑93 (MQ=255)

                                       aCTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTg                                                   >  1:7284283/1‑93 (MQ=255)

                                        cTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGa                                                  >  1:6664107/1‑93 (MQ=255)

                                         tATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGAc                                                 >  2:4031004/1‑93 (MQ=255)

                                         tATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGAc                                                 <  1:6498573/93‑1 (MQ=255)

                                         tATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGAc                                                 >  1:5264331/1‑93 (MQ=255)

                                         tATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGAc                                                 >  1:313774/1‑93 (MQ=255)

                                          aTGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACa                                                >  1:3817785/1‑93 (MQ=255)

                                          aTGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACa                                                >  2:4244517/1‑93 (MQ=255)

                                            ggACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGa                                              <  1:1130101/93‑1 (MQ=255)

                                            ggACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGa                                              <  1:5292854/93‑1 (MQ=255)

                                             gACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGAt                                             <  1:2691785/93‑1 (MQ=255)

                                               cTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGt                                           <  1:3112226/93‑1 (MQ=255)

                                               cTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGt                                           <  1:5255632/93‑1 (MQ=255)

                                                ttCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCCGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGtt                                          >  2:6756655/1‑93 (MQ=255)

                                                  cATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGc                                        >  1:2278191/1‑93 (MQ=255)

                                                   aTTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCa                                       <  1:7595524/93‑1 (MQ=255)

                                                    ttAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCAc                                      >  2:6429109/1‑93 (MQ=255)

                                                       aaCATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCActgc                                   >  1:2044285/1‑93 (MQ=255)

                                                       aaCATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCActgc                                   >  1:4489293/1‑93 (MQ=255)

                                                        aCATGATGAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCActgct                                  >  2:2169963/1‑93 (MQ=255)

                                                          atgatgAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCtgt                                <  2:1832613/93‑1 (MQ=255)

                                                          atgatgAAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCtgt                                <  1:586993/93‑1 (MQ=255)

                                                           tgatgaAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCtgtg                               >  2:1639063/1‑93 (MQ=255)

                                                              tgaAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTgtgtgt                            >  2:536811/1‑93 (MQ=255)

                                                              tgaAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTgtgtgt                            >  1:5140881/1‑93 (MQ=255)

                                                               gaAACCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTgta                           >  1:4613792/1‑93 (MQ=255)

                                                                  aCCCCGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTgtagta                        <  1:3521534/93‑1 (MQ=255)

                                                                   ccccGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGtaa                       <  2:3373599/93‑1 (MQ=255)

                                                                   ccccGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGtaa                       <  1:1302645/93‑1 (MQ=255)

                                                                   ccccGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGtaa                       <  2:757352/93‑1 (MQ=255)

                                                                     ccGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGtaata                     <  2:7266114/93‑1 (MQ=255)

                                                                     ccGCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGtaata                     >  1:4354060/1‑93 (MQ=255)

                                                                       gttttttttATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAAATGTTGCACTGCTGTGTGTAGTAATaaa                   <  2:4380208/91‑1 (MQ=255)

                                                                       gCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATaaa                   <  2:3261105/93‑1 (MQ=255)

                                                                       gCTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATaaa                   <  2:1190649/93‑1 (MQ=255)

                                                                       ccTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATaaa                   <  2:6084457/92‑1 (MQ=255)

                                                                        cTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAAt                  >  2:4863352/1‑93 (MQ=255)

                                                                        cTTTTTTTATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAAt                  <  1:91138/93‑1 (MQ=255)

                                                                         tttttttATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATc                 <  2:3448208/93‑1 (MQ=255)

                                                                           tttttATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAg               >  2:1378273/1‑93 (MQ=255)

                                                                             tttATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGGTGTTGCACTGCTGTGTGTAGTAATAAATCAGcc             <  1:4398143/93‑1 (MQ=255)

                                                                              ttATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGccc            <  1:3663095/93‑1 (MQ=255)

                                                                              ttATTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGccc            >  2:2002105/1‑93 (MQ=255)

                                                                                aTTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTa          >  2:2293260/1‑93 (MQ=255)

                                                                                aTTGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTa          >  1:4892519/1‑93 (MQ=255)

                                                                                  tGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTaaa        >  1:5493834/1‑93 (MQ=255)

                                                                                  tGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTaaa        <  1:1420756/93‑1 (MQ=255)

                                                                                  tGATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTaaa        <  2:2607865/93‑1 (MQ=255)

                                                                                  tGATCGCACGCCTGACAGCGGCGTCTAAAATAGAAGTGCCAGAAGTACTGACAGATGTTACACTGCTGTGTGTAATAATAAATCAGCCCTaaa        <  1:4089987/93‑1 (MQ=255)

                                                                                   gATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAAt       <  1:3860590/93‑1 (MQ=255)

                                                                                   gATCGCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAAt       <  2:122505/93‑1 (MQ=255)

                                                                                       gCACGCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGt   <  1:2131776/93‑1 (MQ=255)

                                                                                        cacgCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTa  <  2:4554068/93‑1 (MQ=255)

                                                                                        cacgCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTa  <  1:5920376/93‑1 (MQ=255)

                                                                                        cacgCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTa  <  1:671011/93‑1 (MQ=255)

                                                                                        cacgCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTa  >  2:2464572/1‑93 (MQ=255)

                                                                                        cacgCCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTa  <  1:2614988/93‑1 (MQ=255)

AGAAGATTTAGTGATCAACAATAATGTATGACCATGAATACTATGGACTTCATTAAACATGATGAAACCCCGCTTTTTTTATTGATCGCACACCTGACAGCTGCCTCTAAAATAGAAGCACCAGAAGTACTGACAGATGTTGCACTGCTGTGTGTAGTAATAAATCAGCCCTAAATGGGTA  >  NC_000913/1102360‑1102540

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`