BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,390,553	T→C	V180A (GTT→GCT)	ycjZ →	putative transcriptional regulator LYSR‑type

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,390,553	0	T	C	100.0%	741.7 / NA	231	V180A (GTT→GCT)	ycjZ	putative transcriptional regulator LYSR‑type
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (122/109); total (122/109)

Only 100 of 237 total aligned reads displayed.

AGATGGATAAAGATATGATCGCCATTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGTTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACATCGGGTACAGCAAATCGCTGGAGATTAATAC  >  NC_000913/1390463‑1390642

agaTGGATAAAGATATGATCGCCATTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTc                                                                                         >  2:6952201/1‑93 (MQ=255)

 gaTGGATAAAGATATGATCGCCATTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTcc                                                                                        >  1:4519542/1‑93 (MQ=255)

   tGGATAAAGATATGATCGCCATTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCaa                                                                                      >  1:3386782/1‑93 (MQ=255)

   tGGATAAAGATATGATCGCCATTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCaa                                                                                      <  1:1792241/93‑1 (MQ=255)

    ggATAAAGATATGATCGCCATTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAAc                                                                                     <  2:1461225/93‑1 (MQ=255)

    ggATAAAGATATGATCGCCATTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAAc                                                                                     >  1:2719714/1‑93 (MQ=255)

       tAAAGATATGATCGCCATTCGAATCGGGCCAGAAATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTc                                                                                  <  1:7607775/93‑1 (MQ=255)

         aaGATATGATCGCCATTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCTCCGAAGTGCTCCAACGTCAg                                                                                >  1:5922351/1‑93 (MQ=255)

           gATATGATCGCCATTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAgtg                                                                              >  1:7448478/1‑93 (MQ=255)

            atatGATCGCCATTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAgtgt                                                                             <  2:5392947/93‑1 (MQ=255)

            atatGATCGCCATTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAgtgt                                                                             >  2:6090554/1‑93 (MQ=255)

            atatGATCGCCATTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAgtgt                                                                             <  2:7658024/93‑1 (MQ=255)

            atatGATCGCCATTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAgtgt                                                                             >  2:4591195/1‑93 (MQ=255)

            atatGATCGCCATTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAgtgt                                                                             <  1:1170198/93‑1 (MQ=255)

             tatGATCGCCATTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTc                                                                            >  2:520210/1‑93 (MQ=255)

               tGATCGCCATTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTcac                                                                          >  1:54875/1‑93 (MQ=255)

               tGATCGCCATTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTcac                                                                          <  1:922978/93‑1 (MQ=255)

               tGATCGCCATTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTcac                                                                          <  1:3191425/93‑1 (MQ=255)

                gATCGCCATTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTcaca                                                                         <  2:7579881/93‑1 (MQ=255)

                gATCGCCATTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTcaca                                                                         >  1:6844591/1‑93 (MQ=255)

                 aTCGCCATTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACaa                                                                        <  1:3261544/93‑1 (MQ=255)

                 aTCGCCATTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACaa                                                                        >  2:5928304/1‑93 (MQ=255)

                  tCGCCATTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAAt                                                                       >  1:767764/1‑93 (MQ=255)

                    gCCATTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTa                                                                     >  2:7809351/1‑93 (MQ=255)

                     ccATTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTaa                                                                    >  2:1190461/1‑93 (MQ=255)

                     ccATTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTaa                                                                    <  1:209969/93‑1 (MQ=255)

                     ccATTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTaa                                                                    <  1:3027230/93‑1 (MQ=255)

                      cATTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAAt                                                                   <  2:7039538/93‑1 (MQ=255)

                       aTTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCCACGTCAGTGTCACAATTAATa                                                                  >  2:2963764/1‑93 (MQ=255)

                       aTTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATa                                                                  >  1:4723479/1‑93 (MQ=255)

                        ttCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAg                                                                 >  2:1231439/1‑93 (MQ=255)

                         tCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGa                                                                >  1:5357082/1‑93 (MQ=255)

                          cGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGat                                                               <  1:2517454/93‑1 (MQ=255)

                           gAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGatc                                                              <  1:974641/93‑1 (MQ=255)

                            aaTCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGatca                                                             >  1:4888407/1‑93 (MQ=255)

                            aaTCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGatca                                                             <  2:2590113/93‑1 (MQ=255)

                              tCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGatcatc                                                           >  2:2855827/1‑93 (MQ=255)

                              tCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGatcatc                                                           >  2:7244244/1‑93 (MQ=255)

                              tCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGatcatc                                                           <  1:3639913/93‑1 (MQ=255)

                               cGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGAtcatca                                                          <  1:4071799/93‑1 (MQ=255)

                               cGGGCAAGAAATGCCAATGGCTATTGTTGGCTCAACGGATTATTTTTCTCGCCGAAGTGCTCCAACATCAGAGTCACAAATAATAGAtcatca                                                          <  1:6997523/93‑1 (MQ=255)

                                gggCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAg                                                         >  2:1570068/1‑93 (MQ=255)

                                gggCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAg                                                         <  1:839643/93‑1 (MQ=255)

                                  gCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGc                                                       <  1:6755603/93‑1 (MQ=255)

                                   ccAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCa                                                      >  1:1064272/1‑93 (MQ=255)

                                     aGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCaat                                                    <  2:3085554/93‑1 (MQ=255)

                                         ataCCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCaattaat                                                <  1:3350289/93‑1 (MQ=255)

                                          taCCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCaattaatt                                               <  2:6893437/93‑1 (MQ=255)

                                          taCCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCaattaatt                                               >  2:7512857/1‑93 (MQ=255)

                                           aCCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAAttt                                              <  2:5499096/93‑1 (MQ=255)

                                            ccAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTg                                             <  2:2752453/93‑1 (MQ=255)

                                            ccAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTg                                             <  2:913836/93‑1 (MQ=255)

                                             cAATGGCTATTGTTTGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGt                                            <  1:4013326/93‑1 (MQ=255)

                                             cAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGt                                            >  2:7470997/1‑93 (MQ=255)

                                             cAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGt                                            >  2:3461454/1‑93 (MQ=255)

                                              aaTGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGCAGGGCTCCAACGTCAGTGTCACAAATAATAGATCATCGTGCATTTAATTTTTa                                           >  2:4950553/1‑93 (MQ=255)

                                              aaTGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTa                                           >  1:108880/1‑93 (MQ=255)

                                              aaTGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTa                                           <  1:4269356/93‑1 (MQ=255)

                                              aaTGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTa                                           <  2:5697755/93‑1 (MQ=255)

                                              aaTGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTa                                           <  1:6615921/93‑1 (MQ=255)

                                               aTGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTAt                                          >  1:7175427/1‑93 (MQ=255)

                                               aTGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGGGTCACAATTAATAGATCATCAGGCAATTAATTTTTAt                                          >  1:1675608/1‑93 (MQ=255)

                                                tGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATc                                         >  2:857352/1‑93 (MQ=255)

                                                   cTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTc                                      >  1:1377971/1‑93 (MQ=255)

                                                    tATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTcc                                     >  2:5726072/1‑93 (MQ=255)

                                                    tATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTcc                                     >  2:417589/1‑93 (MQ=255)

                                                    tATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTcc                                     >  1:1353523/1‑93 (MQ=255)

                                                      ttgttgGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCca                                   >  2:3569644/1‑93 (MQ=255)

                                                       tgttgGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCcac                                  >  2:4726428/1‑93 (MQ=255)

                                                         ttgGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACAt                                >  2:6653314/1‑93 (MQ=255)

                                                         ttgGCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACAt                                >  2:3761053/1‑93 (MQ=255)

                                                           ggCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACATCg                              <  1:7077098/93‑1 (MQ=255)

                                                           ggCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACATCg                              >  2:3763052/1‑93 (MQ=255)

                                                            gCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACATCgg                             <  1:3601747/93‑1 (MQ=255)

                                                            gCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACATCgg                             <  2:4344403/93‑1 (MQ=255)

                                                            gCTCACCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACATCgg                             >  1:2199685/1‑93 (MQ=255)

                                                            gCTCACCGGATGATTGTGCGCGCCGAAGTGCTCCAACGTCAGTGTCACAAGTAATAGATCATCAGGCAATGAATTTGTATCTTCCCACATCgg                             <  1:655317/93‑1 (MQ=255)

                                                                aCCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACATCGGGTAc                         >  1:5701416/1‑93 (MQ=255)

                                                                aCCGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACATCGGGTAc                         <  2:3526077/93‑1 (MQ=255)

                                                                  cGGATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACATCGGGTACAg                       <  2:193411/93‑1 (MQ=255)

                                                                   ggATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACATCGGGTACAGc                      >  1:5239948/1‑93 (MQ=255)

                                                                   ggATTATTTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACATCGGGTACAGc                      <  2:4767369/93‑1 (MQ=255)

                                                                     attattTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACATCGGGTACAGCaa                    >  1:4281250/1‑93 (MQ=255)

                                                                     attattTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACATCGGGTACAGCaa                    <  1:61488/93‑1 (MQ=255)

                                                                      ttattTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACATCGGGTACAGCaaa                   >  2:2456919/1‑93 (MQ=255)

                                                                       tattTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACATCGGGTACAGCAAAt                  >  1:7570506/1‑93 (MQ=255)

                                                                       tattTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACATCGGGTACAGCAAAt                  <  1:6414715/93‑1 (MQ=255)

                                                                       tattTTTCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACATCGGGTACAGCAAAt                  >  2:6382710/1‑93 (MQ=255)

                                                                         tttttCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACATCGGGTACAGCAAATCg                >  1:4625791/1‑93 (MQ=255)

                                                                            ttCTCGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACATCGGGTACAGCAAATCGCTg             >  2:653413/1‑93 (MQ=255)

                                                                             tctcGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACATCGGGTACAGCAAATCGCTgg            <  2:5252782/93‑1 (MQ=255)

                                                                             tctcGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACATCGGGTACAGCAAATCGCTgg            >  1:6271560/1‑93 (MQ=255)

                                                                                cGCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACATCGGGTACAGCAAATCGCTGgaga         <  2:7751216/93‑1 (MQ=255)

                                                                                 gCCGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACATCGGGTACAGCAAATCGCTGGAGAt        <  1:3913832/93‑1 (MQ=255)

                                                                                  ccGAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACATCGGGTACAGCAAATCGCTGGAGAtt       >  2:2311775/1‑93 (MQ=255)

                                                                                    gAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACATCGGGTACAGCAAATCGCTGGAGATTaa     <  1:7133168/93‑1 (MQ=255)

                                                                                    gAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACATCGGGTACAGCAAATCGCTGGAGATTaa     >  1:5015762/1‑93 (MQ=255)

                                                                                    gAAGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACATCGGGTACAGCAAATCGCTGGAGATTaa     <  2:2688895/93‑1 (MQ=255)

                                                                                      aGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACATCGGGTACAGCAAATCGCTGGAGATTAATa   <  2:721266/93‑1 (MQ=255)

                                                                                      aGTGCTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACATCGGGTACAGCAAATCGCTGGAGATTAATa   >  1:3117235/1‑93 (MQ=255)

AGATGGATAAAGATATGATCGCCATTCGAATCGGGCCAGATATACCAATGGCTATTGTTGGCTCACCGGATTATTTTTCTCGCCGAAGTGTTCCAACGTCAGTGTCACAATTAATAGATCATCAGGCAATTAATTTGTATCTTCCCACATCGGGTACAGCAAATCGCTGGAGATTAATAC  >  NC_000913/1390463‑1390642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`