BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,490,230	T→C	intergenic (‑77/‑264)	b1420 ← / → trg	hypothetical protein/methyl‑accepting chemotaxis protein III

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,490,230	0	T	C	100.0%	637.6 / NA	200	intergenic (‑77/‑264)	b1420/trg	hypothetical protein/methyl‑accepting chemotaxis protein III
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (92/108); total (92/108)

Only 100 of 207 total aligned reads displayed.

ATTGCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGTCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAATTTTTC  >  NC_000913/1490140‑1490318

 ttGCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGcctc                                                                                       <  2:5390479/93‑1 (MQ=255)

  tGCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCa                                                                                      <  2:4185994/93‑1 (MQ=255)

   gCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAg                                                                                     <  1:6634513/93‑1 (MQ=255)

     tAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGc                                                                                   >  1:5554278/1‑93 (MQ=255)

     tAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGc                                                                                   >  2:6995814/1‑93 (MQ=255)

          tCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCAcccc                                                                              >  1:6460534/1‑92 (MQ=255)

            aTTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCa                                                                            <  1:4179988/93‑1 (MQ=255)

            aTTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCa                                                                            <  1:7257515/93‑1 (MQ=255)

            aTTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCa                                                                            >  2:341212/1‑93 (MQ=255)

             ttCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAg                                                                           >  1:4201295/1‑93 (MQ=255)

             ttCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAg                                                                           >  2:3804307/1‑93 (MQ=255)

                gTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCa                                                                        <  2:3821672/93‑1 (MQ=255)

                gTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCa                                                                        <  1:6370058/93‑1 (MQ=255)

                 ttGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGTCAt                                                                       >  1:3687636/1‑93 (MQ=255)

                 ttGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCAt                                                                       >  1:2415943/1‑93 (MQ=255)

                 ttGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCAt                                                                       >  2:4804827/1‑93 (MQ=255)

                  tGGCCTCGGTTGATAGAAATATCGGTCGTGGCCTTCGTCTTTCTGATTCTCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACGCGCAGGCATc                                                                      >  1:6109367/1‑93 (MQ=255)

                  tGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATc                                                                      <  1:2055685/93‑1 (MQ=255)

                      cTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTAt                                                                  <  2:6476568/93‑1 (MQ=255)

                       tCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATg                                                                 <  1:5450894/93‑1 (MQ=255)

                       tCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATg                                                                 >  1:203358/1‑93 (MQ=255)

                        cGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGa                                                                <  2:6618417/93‑1 (MQ=255)

                        cGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGa                                                                <  1:7318668/93‑1 (MQ=255)

                        cGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCATCAGGCACCCGCATGCATCCTATGa                                                                >  2:5221677/1‑93 (MQ=255)

                          gTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAgg                                                              >  1:5914394/1‑93 (MQ=255)

                            tGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGtt                                                            >  2:3405600/1‑93 (MQ=255)

                             gATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGttt                                                           >  1:2669976/1‑93 (MQ=255)

                             gATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGttt                                                           <  1:720255/93‑1 (MQ=255)

                              aTAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTc                                                          <  1:5742635/93‑1 (MQ=255)

                              aTAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTc                                                          <  2:457746/93‑1 (MQ=255)

                               tAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTcc                                                         >  1:1941842/1‑93 (MQ=255)

                                aGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCt                                                        <  2:2005694/93‑1 (MQ=255)

                                 gAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCtt                                                       <  1:3794687/93‑1 (MQ=255)

                                    atatCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAgg                                                    <  2:1574583/93‑1 (MQ=255)

                                    atatCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAgg                                                    >  1:84595/1‑93 (MQ=255)

                                     tatCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAggg                                                   <  2:35731/93‑1 (MQ=255)

                                     tatCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAggg                                                   >  2:7059339/1‑93 (MQ=255)

                                      atCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGa                                                  <  2:2960972/93‑1 (MQ=255)

                                      atCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGa                                                  <  2:5195433/93‑1 (MQ=255)

                                      atCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGa                                                  <  2:5758235/93‑1 (MQ=255)

                                       tcggtcggGGCTGTTGTCTTTCTGATTCCCGGTTAGCCTAAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGAc                                                 <  1:63045/93‑1 (MQ=255)

                                       tcggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGAc                                                 <  2:681208/93‑1 (MQ=255)

                                       tcggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGAc                                                 <  1:2459617/93‑1 (MQ=255)

                                       tcggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGAc                                                 >  1:256308/1‑93 (MQ=255)

                                       tcggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGAc                                                 <  1:3404356/93‑1 (MQ=255)

                                       tcggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGAc                                                 >  2:4459567/1‑93 (MQ=255)

                                        cggtcggGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACg                                                <  1:3067444/93‑1 (MQ=255)

                                           tcggGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGaaa                                             <  2:3658931/93‑1 (MQ=255)

                                              gggCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAaata                                          <  2:4260261/93‑1 (MQ=255)

                                               ggCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAaataa                                         <  2:5162677/93‑1 (MQ=255)

                                                gCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAaataat                                        <  1:466934/93‑1 (MQ=255)

                                                 ccTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATc                                       <  2:905623/93‑1 (MQ=255)

                                                  cTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCGTCCTATGAGGTTTCCTTAGGGACGAAAATAATCa                                      <  2:7622671/93‑1 (MQ=255)

                                                  cTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCa                                      >  2:510862/1‑93 (MQ=255)

                                                  cTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCa                                      <  2:2750662/93‑1 (MQ=255)

                                                  cTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGATTCCTTAGGGACGAAAATAATCa                                      >  2:4277843/1‑93 (MQ=255)

                                                   ttCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCAc                                     >  1:7812221/1‑93 (MQ=255)

                                                   ttCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCAc                                     >  1:5672198/1‑93 (MQ=255)

                                                   ttCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCAc                                     <  1:2329699/93‑1 (MQ=255)

                                                   ttCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGAAGGCATCCTATGAGGTTTCCTTAGGGACGCAAATAATCAc                                     >  1:5148599/1‑93 (MQ=255)

                                                     cGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACtt                                   <  1:3434494/93‑1 (MQ=255)

                                                     cGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACtt                                   <  2:7313415/93‑1 (MQ=255)

                                                     cGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACtt                                   <  1:2101967/93‑1 (MQ=255)

                                                      gTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTTTGAGGTTTCCTTAGGGACGAAAATAATCACTTc                                  <  2:7737742/93‑1 (MQ=255)

                                                      gTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTc                                  <  2:7511841/93‑1 (MQ=255)

                                                      gTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTc                                  <  1:6119118/93‑1 (MQ=255)

                                                       tCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCa                                 <  1:3536249/93‑1 (MQ=255)

                                                       tCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCa                                 >  2:5779545/1‑93 (MQ=255)

                                                       tCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCa                                 >  1:105300/1‑93 (MQ=255)

                                                       tCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCa                                 <  2:86728/93‑1 (MQ=255)

                                                       tCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCa                                 <  2:230444/93‑1 (MQ=255)

                                                        cTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCAc                                <  1:5281596/93‑1 (MQ=255)

                                                         tttCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACg                               >  2:5016005/1‑93 (MQ=255)

                                                           tCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGaa                             <  1:6989797/93‑1 (MQ=255)

                                                           tCTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGaa                             >  1:2982273/1‑93 (MQ=255)

                                                            cTGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGaaa                            <  2:5586798/93‑1 (MQ=255)

                                                             tGATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAAt                           <  2:3178112/93‑1 (MQ=255)

                                                              gATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAAtt                          >  1:1416086/1‑93 (MQ=255)

                                                              gATTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAAtt                          >  1:7401055/1‑93 (MQ=255)

                                                               aTTCCCGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTg                         >  1:1490875/1‑93 (MQ=255)

                                                                  cccGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGt                      >  2:1322724/1‑93 (MQ=255)

                                                                  cccGGTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGt                      <  1:4916667/93‑1 (MQ=255)

                                                                     ggTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCt                   <  2:1868162/93‑1 (MQ=255)

                                                                     ggTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCt                   <  2:7595277/93‑1 (MQ=255)

                                                                      gTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTg                  >  2:5491868/1‑93 (MQ=255)

                                                                      gTTAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTg                  <  1:413565/93‑1 (MQ=255)

                                                                        tAGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGtt                <  1:7561586/93‑1 (MQ=255)

                                                                         aGCCTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGttt               <  1:3818442/93‑1 (MQ=255)

                                                                            cTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTcc            >  1:323968/1‑93 (MQ=255)

                                                                            cTGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTcc            <  1:989169/93‑1 (MQ=255)

                                                                             tGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCa           <  1:4231991/93‑1 (MQ=255)

                                                                             tGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCa           >  2:5549922/1‑93 (MQ=255)

                                                                             tGAAAACAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCa           <  1:5940059/93‑1 (MQ=255)

                                                                                 aaCAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGact       >  1:6214565/1‑91 (MQ=255)

                                                                                 aaCAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAAt       >  2:780321/1‑93 (MQ=255)

                                                                                 aaCAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAAt       <  1:2886879/93‑1 (MQ=255)

                                                                                   cAGAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAAttt     >  2:5252513/1‑93 (MQ=255)

                                                                                     gAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAAttttt   >  2:6234912/1‑93 (MQ=255)

                                                                                     gAAAGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAAttttt   >  2:1466830/1‑93 (MQ=255)

                                                                                      aaaGCCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAATTTTTc  <  1:4492828/93‑1 (MQ=255)

ATTGCTAGGTTCATTCGTTGGCCTCGGTTGATAGAAATATCGGTCGGGGCCTTCGTCTTTCTGATTCCCGGTTAGCCTGAAAACAGAAAGTCTCAGGCACCCGCAGGCATCCTATGAGGTTTCCTTAGGGACGAAAATAATCACTTCACGAAATTGCGTGCTGTTTTCCAGAATTTTTC  >  NC_000913/1490140‑1490318

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`