BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,664,091	T→C	S271S (AGT→AGC)	b1592 →	putative chloride channel

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,664,091	0	T	C	100.0%	611.4 / NA	192	S271S (AGT→AGC)	b1592	putative chloride channel
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (102/90); total (102/90)

Only 100 of 200 total aligned reads displayed.

TGCGCTGATTATCAGTACAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGTCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAGTGTGGGGCAACGG  >  NC_000913/1664001‑1664180

    cTGATTATCAGTACAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCaaa                                                                                     <  1:1324397/93‑1 (MQ=255)

     tGATTATCAGTACAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCGTCGTGGATTTGTGAGCCTCAAAc                                                                                    <  1:2738332/93‑1 (MQ=255)

      gATTATCAGTACAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACt                                                                                   >  2:4147884/1‑93 (MQ=255)

        ttATCAGTACAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTg                                                                                 >  1:3316471/1‑93 (MQ=255)

         tATCAGTACAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTgc                                                                                <  2:5899284/93‑1 (MQ=255)

          aTCAGTACAGGTGTGCTGGCAGGTCTGTGCGGACCGCTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTgcg                                                                               <  1:1657527/93‑1 (MQ=255)

           tCAGTACAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTgcgc                                                                              <  1:3699124/93‑1 (MQ=255)

           tCAGTACAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTgcgc                                                                              <  2:6263928/93‑1 (MQ=255)

            cAGTACAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGcgcc                                                                             <  2:6402480/93‑1 (MQ=255)

                  aGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTg                                                                       <  1:7678703/93‑1 (MQ=255)

                   ggTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTgg                                                                      >  1:459672/1‑93 (MQ=255)

                   ggTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTgg                                                                      >  1:355225/1‑93 (MQ=255)

                    gtgtGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGc                                                                     >  1:1246471/1‑93 (MQ=255)

                      gtgCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCaa                                                                   <  2:5663747/93‑1 (MQ=255)

                       tgCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAAc                                                                  <  2:6443691/93‑1 (MQ=255)

                       tgCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAAc                                                                  <  1:1671012/93‑1 (MQ=255)

                       tgCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAAc                                                                  >  1:3590197/1‑93 (MQ=255)

                        gCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACt                                                                 <  2:3230674/93‑1 (MQ=255)

                        gCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTGGCGCCGCCCTGGCAACt                                                                 <  1:7056043/93‑1 (MQ=255)

                          tGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTgg                                                               >  1:4789352/1‑93 (MQ=255)

                           ggCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGc                                                              >  2:3345839/1‑93 (MQ=255)

                           ggCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGc                                                              <  2:7417093/93‑1 (MQ=255)

                            gCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCa                                                             >  2:2264278/1‑93 (MQ=255)

                              aGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACt                                                           >  2:5220698/1‑93 (MQ=255)

                               ggTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTa                                                          <  2:6928666/93‑1 (MQ=255)

                               ggTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTa                                                          >  1:5602736/1‑93 (MQ=255)

                               ggTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTa                                                          >  2:1327047/1‑93 (MQ=255)

                               ggTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTa                                                          <  1:2717809/93‑1 (MQ=255)

                                gTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAg                                                         <  1:928358/93‑1 (MQ=255)

                                 tCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAgg                                                        <  2:5811648/93‑1 (MQ=255)

                                  cTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGc                                                       >  2:2185065/1‑93 (MQ=255)

                                  cTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGc                                                       >  2:4924166/1‑93 (MQ=255)

                                  cTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGc                                                       >  2:5885193/1‑93 (MQ=255)

                                   tgtgCGGACGGTGGTTGTTAACTTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCg                                                      <  1:4064708/93‑1 (MQ=255)

                                    gtgCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCgg                                                     >  1:2992555/1‑93 (MQ=255)

                                    gtgCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCgg                                                     <  1:543251/93‑1 (MQ=255)

                                     tgCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCggg                                                    >  2:3711810/1‑93 (MQ=255)

                                        ggACCACTGTTGTTAACGTTAATGATCGCCTGTCATCGTGGATTTGTGAAGCTCAAACTTGCGCCGCCCTGGCAACTGGCACCAGGCGGGtgg                                                 <  2:1573368/93‑3 (MQ=255)

                                           ccACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATc                                              >  1:5918514/1‑93 (MQ=255)

                                             ccTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGt                                            <  1:4265015/92‑1 (MQ=255)

                                             aCTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGt                                            >  2:6978716/1‑93 (MQ=255)

                                               tgttgtTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTgg                                          >  1:1759103/1‑93 (MQ=255)

                                               tgttgtTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTgg                                          >  2:5361390/1‑93 (MQ=255)

                                                gttgttAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTggg                                         <  2:620663/93‑1 (MQ=255)

                                                 ttgttAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGt                                        <  2:164881/93‑1 (MQ=255)

                                                 ttgttAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGt                                        >  2:6036902/1‑93 (MQ=255)

                                                 ttgttAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGt                                        <  1:2945020/93‑1 (MQ=255)

                                                 ttgttAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGt                                        <  1:7822752/93‑1 (MQ=255)

                                                  tgttAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTc                                       <  2:7202784/93‑1 (MQ=255)

                                                  tgttAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGGTGATCGTGGGTc                                       >  1:765653/1‑93 (MQ=255)

                                                   gttAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCt                                      >  1:5076602/1‑93 (MQ=255)

                                                   gttAACGTGAATGAACGCCTGTCATCGTGGATGTGTGAGCCTCAAACGTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCt                                      <  1:7141260/93‑1 (MQ=255)

                                                    ttAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTg                                     >  2:7686264/1‑93 (MQ=255)

                                                      aaCGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCt                                   >  1:2453616/1‑93 (MQ=255)

                                                       aCGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGTCACTAGGCGGGGTGATCGTGGGGCTGCtt                                  >  2:1777883/1‑93 (MQ=255)

                                                        cGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCttt                                 >  1:7409605/1‑93 (MQ=255)

                                                        cGTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCttt                                 >  1:1398572/1‑93 (MQ=255)

                                                         gTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCTGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTc                                <  1:5095208/93‑1 (MQ=255)

                                                         gTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTc                                >  1:7218327/1‑93 (MQ=255)

                                                         gTTAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGATGATCGTGGGTCTGCTTTc                                >  1:3118382/1‑93 (MQ=255)

                                                          ttAATGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTcc                               <  2:6581790/93‑1 (MQ=255)

                                                            aaTGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCt                             >  2:4154074/1‑93 (MQ=255)

                                                            aaTGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCt                             >  1:4988608/1‑93 (MQ=255)

                                                              tGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGt                           <  2:4819322/93‑1 (MQ=255)

                                                              tGAACGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGt                           <  2:7495673/93‑1 (MQ=255)

                                                                aaCGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTc                         >  2:2967480/1‑93 (MQ=255)

                                                                 aCGCCTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTca                        <  1:1037239/93‑1 (MQ=255)

                                                                    ccTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCacac                     >  2:852964/1‑93 (MQ=255)

                                                                    ccTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCacac                     >  1:4126199/1‑93 (MQ=255)

                                                                     cTGTCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACAcc                    <  1:7316826/93‑1 (MQ=255)

                                                                      tGTCATCGTGGATTTGTGAGCCTCAAACTTGCTCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCt                   <  2:2826309/93‑1 (MQ=255)

                                                                        tCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGc                 <  1:6453810/93‑1 (MQ=255)

                                                                        tCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGc                 >  2:2487339/1‑93 (MQ=255)

                                                                        tCATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTATTCACACCttc                 >  2:5731849/1‑91 (MQ=255)

                                                                         cATCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCa                <  2:5637315/93‑1 (MQ=255)

                                                                          aTCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAg               >  1:3379156/1‑93 (MQ=255)

                                                                          aTCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAg               <  2:498583/93‑1 (MQ=255)

                                                                          aTCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAg               >  1:5402413/1‑93 (MQ=255)

                                                                           tagTGGCTTTGTGAGCCTCAGACATGCGACGCACTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACCCCTGCAgt              <  1:3801545/91‑1 (MQ=255)

                                                                           tCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAgt              >  2:4380927/1‑93 (MQ=255)

                                                                           tCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAgt              >  1:5752441/1‑93 (MQ=255)

                                                                           tCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAgt              >  2:5658561/1‑93 (MQ=255)

                                                                           tCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAgt              >  2:1897276/1‑93 (MQ=255)

                                                                           tCGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAgt              >  2:1392615/1‑93 (MQ=255)

                                                                            cGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAgtg             <  2:898795/93‑1 (MQ=255)

                                                                            cGTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAgtg             <  2:3993684/93‑1 (MQ=255)

                                                                             gTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAgtgt            >  1:3279629/1‑93 (MQ=255)

                                                                             gTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAgtgt            <  2:1207158/93‑1 (MQ=255)

                                                                             gTGGATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAgtgt            <  1:6170281/93‑1 (MQ=255)

                                                                               ggATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAGTGTgg          >  2:6610704/1‑93 (MQ=255)

                                                                                gATTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAGTGTggg         >  1:6405920/1‑93 (MQ=255)

                                                                                 aTTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAGTGTgggg        >  2:3879956/1‑93 (MQ=255)

                                                                                 aTTTGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAGTGTgggg        <  2:345948/93‑1 (MQ=255)

                                                                                  tttGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAGTGTGGGGc       <  2:4262033/93‑1 (MQ=255)

                                                                                  tttGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAGTGTGGGGc       >  1:2045363/1‑93 (MQ=255)

                                                                                  tttGTGAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAGTGTGGGGc       >  1:5254372/1‑93 (MQ=255)

                                                                                    tgtgAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAGTGTGGGGCaa     <  2:534276/93‑1 (MQ=255)

                                                                                     gtgAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAGTGTGGGGCAAc    <  2:5498458/93‑1 (MQ=255)

                                                                                     gtgAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAGTGTGGGGCAAc    <  1:7023206/93‑1 (MQ=255)

                                                                                      tgAGCCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAGTGTGGGGCAACg   >  1:4430342/1‑93 (MQ=255)

TGCGCTGATTATCAGTACAGGTGTGCTGGCAGGTCTGTGCGGACCACTGTTGTTAACGTTAATGAACGCCTGTCATCGTGGATTTGTGAGTCTCAAACTTGCGCCGCCCTGGCAACTGGCACTAGGCGGGTTGATCGTGGGTCTGCTTTCCCTGTTCACACCTGCAGTGTGGGGCAACGG  >  NC_000913/1664001‑1664180

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`