Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 196,376 G→A G198S (GGC→AGC)  cdsA → CDP‑diglyceride synthetase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913196,3760GA99.2% 945.0 / ‑5.8 263G198S (GGC→AGC) cdsACDP‑diglyceride synthetase
Reads supporting (aligned to +/- strand):  ref base G (1/1);  new base A (117/144);  total (118/145)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 266 total aligned reads displayed.

TCATGGGGTTATGGCATGTGGGCGAATCTCGACGTCGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCGGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAGGACACGGTGGTATTTTAGATCGTA  >  NC_000913/196286‑196466
                                                                                          |                                                                                          
tcATGGGGTTATGGCATGTGGGCGAATCTCGACGTCGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGc                                                                                          <  1:7501682/93‑1 (MQ=255)
    ggggTTATGGCATGTGGGCGAATCTCGACGTCGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATc                                                                                      <  1:5433472/93‑1 (MQ=255)
      ggTTATGGCATGTGGGCGAATCTCGACGTCGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTg                                                                                    <  2:1825490/93‑1 (MQ=255)
        ttATGGCATGTGGGCGAATCTCGACGTCGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGAc                                                                                  <  2:4666138/93‑1 (MQ=255)
        ttATGGCATGTGGGCGAATCTCGACGTCGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGAc                                                                                  >  2:1021020/1‑93 (MQ=255)
        ttATGGCATGTGGGCGAATCTCGACGTCGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGAc                                                                                  <  2:5875/93‑1 (MQ=255)
           tGGCATGTGGGCGAATCTCGACGTCGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCga                                                                               >  1:1793473/1‑93 (MQ=255)
             gCATGTGGGCGAATCTCGACGTCGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGCTCTGACCgaga                                                                             >  1:3718398/1‑93 (MQ=255)
              cATGTGGGCGAATCTCGACGTCGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGACTTGACCGagag                                                                            >  1:7246254/1‑93 (MQ=255)
               aTGTGGGCGAATCTCGACGTCGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCGGCGATCTGACCGagaga                                                                           >  1:6368975/1‑92 (MQ=255)
               aTGTGGGCGAATCTCGACGTCGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGt                                                                           >  2:3615646/1‑93 (MQ=255)
               aTGTGGGCGAATCTCGACGTCGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGt                                                                           <  1:3271980/93‑1 (MQ=255)
               aTGGGGGCGAAGCTCGACGTCGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGt                                                                           <  1:262798/93‑1 (MQ=255)
                tgtgGGCGAATCTCGACGTCGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTa                                                                          <  1:6838196/93‑1 (MQ=255)
                 gtgGGCGAATCTCGACGTCGCTCCCGTCACCTCACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTAt                                                                         <  2:4057606/93‑1 (MQ=255)
                  tgGGCGAATCTCGACGTCGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATg                                                                        >  1:1042196/1‑93 (MQ=255)
                      cGAATCTCGACGTCGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTa                                                                    <  2:6005010/93‑1 (MQ=255)
                       gAATCTCGACGTCGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTaa                                                                   <  1:6682691/93‑1 (MQ=255)
                       gAATCTCGACGTCGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTaa                                                                   <  2:3861273/93‑1 (MQ=255)
                       gAATCTCGACGTCGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTaa                                                                   <  1:5145247/93‑1 (MQ=255)
                        aaTCTCGACGTCGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAg                                                                  >  1:2484802/1‑93 (MQ=255)
                         aTCTCGACGTCGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGc                                                                 <  2:3434297/93‑1 (MQ=255)
                         aTCTCGACGTCGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGc                                                                 <  2:4339481/93‑1 (MQ=255)
                         aTCTCGACGTCGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGc                                                                 <  2:2678298/93‑1 (MQ=255)
                         aTCTCGACGTCGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGAGCTGACCGAGAGTATGTTTAAGc                                                                 >  1:4146546/1‑93 (MQ=255)
                              gACGTCGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGaa                                                            <  2:725805/93‑1 (MQ=255)
                              gACGTCGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGaa                                                            <  1:6050286/93‑1 (MQ=255)
                                cGTCGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGc                                                          <  2:4877808/93‑1 (MQ=255)
                                  gcGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAg                                                        <  2:684710/92‑1 (MQ=255)
                                   cGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAgg                                                       >  1:519929/1‑93 (MQ=255)
                                   cGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAgg                                                       >  2:665872/1‑93 (MQ=255)
                                   cGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAgg                                                       >  2:68744/1‑93 (MQ=255)
                                    gCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGa                                                      >  1:7081667/1‑93 (MQ=255)
                                     cTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGaa                                                     >  2:4110857/1‑93 (MQ=255)
                                     cTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGaa                                                     >  2:6815761/1‑93 (MQ=255)
                                      tCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAAt                                                    >  1:3098808/1‑93 (MQ=255)
                                      tCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAAt                                                    >  2:6604390/1‑93 (MQ=255)
                                      tCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAAt                                                    >  1:458301/1‑93 (MQ=255)
                                        ccGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTa                                                  >  2:6252755/1‑93 (MQ=255)
                                          gTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAg                                                <  1:7873603/93‑1 (MQ=255)
                                           tCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAgg                                               <  2:3657959/93‑1 (MQ=255)
                                            cACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGa                                              <  1:2385607/93‑1 (MQ=255)
                                            cACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGa                                              <  2:514834/93‑1 (MQ=255)
                                            cACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGa                                              <  2:6419272/93‑1 (MQ=255)
                                             cccTTACTCATTTGCTCTATTGTCGCAGCGTTGGCCTCAGTGCTCAGCGTTCTGGCCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGAc                                             <  2:7009468/92‑1 (MQ=255)
                                             aCCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGAc                                             >  2:4980390/1‑93 (MQ=255)
                                             aCCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGAc                                             >  2:7697027/1‑93 (MQ=255)
                                             aCCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTCAAGCGTGAAGCAGGAATTAAGGAc                                             <  1:5937762/93‑1 (MQ=255)
                                              ccTTCCTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACa                                            <  2:2410583/93‑1 (MQ=255)
                                              ccTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACa                                            <  2:2250755/93‑1 (MQ=255)
                                              ccTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACa                                            >  2:447393/1‑93 (MQ=255)
                                                ttACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGc                                          <  1:5071582/93‑1 (MQ=255)
                                                ttACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGc                                          >  2:1187884/1‑93 (MQ=255)
                                                ttACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGc                                          <  2:2370058/93‑1 (MQ=255)
                                                 tACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCg                                         <  2:593541/93‑1 (MQ=255)
                                                    tCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTc                                      >  1:6120306/1‑93 (MQ=255)
                                                    tCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTc                                      >  1:4379365/1‑93 (MQ=255)
                                                      aTTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCAt                                    >  1:1765492/1‑93 (MQ=255)
                                                         tGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTa                                 >  1:879060/1‑93 (MQ=255)
                                                          gCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTaa                                >  2:2883528/1‑93 (MQ=255)
                                                          gCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTaa                                >  1:7557833/1‑93 (MQ=255)
                                                          gCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTaa                                <  1:7527417/93‑1 (MQ=255)
                                                           ctctATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAAt                               >  2:3401317/1‑93 (MQ=255)
                                                              tATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTcc                            >  2:4581220/1‑93 (MQ=255)
                                                              tATTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTcc                            >  2:2439614/1‑93 (MQ=255)
                                                               aTTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCa                           >  2:1714212/1‑93 (MQ=255)
                                                               aTTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCa                           <  1:7052383/93‑1 (MQ=255)
                                                               aTTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCa                           >  2:7510146/1‑93 (MQ=255)
                                                               aTTGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCa                           <  1:6444463/93‑1 (MQ=255)
                                                                ttGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAg                          >  2:1897004/1‑93 (MQ=255)
                                                                ttGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAg                          <  1:3777749/93‑1 (MQ=255)
                                                                ttGTCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAg                          >  1:5599895/1‑93 (MQ=255)
                                                                 tGTCGCAGCGTGAGCCGCAGTGCTGAGCGATCTGACCGAGAGTATGTGTAAGCGGTAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAgg                         <  1:1287403/93‑1 (MQ=255)
                                                                   tCGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAGGac                       <  1:2289932/93‑1 (MQ=255)
                                                                    cGCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAGGaca                      <  2:2260088/93‑1 (MQ=255)
                                                                     gCAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGAGGTCATTTAATTCCAGGacac                     >  1:2584190/1‑93 (MQ=255)
                                                                      cAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAGGACACg                    >  1:2048640/1‑93 (MQ=255)
                                                                      cAGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAGGACACg                    <  1:7676420/93‑1 (MQ=255)
                                                                       aGCGTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAGGACACgg                   >  2:7905048/1‑93 (MQ=255)
                                                                          gTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAGGACACggtgg                >  1:404531/1‑93 (MQ=255)
                                                                          gTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAGGACACggtgg                >  1:1532823/1‑93 (MQ=255)
                                                                          gTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAGGACACggtgg                <  1:4971293/93‑1 (MQ=255)
                                                                          gTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAGGACACggtgg                <  1:6631790/93‑1 (MQ=255)
                                                                          gTTAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAGGACACggtgg                <  2:4415235/93‑1 (MQ=255)
                                                                           ttAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAGGACACggtggt               >  2:5182622/1‑93 (MQ=255)
                                                                           ttAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAGGACACggtggt               >  2:20303/1‑93 (MQ=255)
                                                                           ttAGCCTCAGAGCTCAGCGATCTGACCGAGCGGATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAGGCCACggtggt               >  2:2475938/1‑93 (MQ=255)
                                                                            tAGCCTCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAGGACACGGTGGTa              >  1:3935998/1‑93 (MQ=255)
                                                                            tAGCCTCAGTGCTCAGCGATCTGACCGAGAGCATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAGGACACGGTGGTa              <  2:2996996/93‑1 (MQ=255)
                                                                                 tCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAGTTCCAGGACACGCTGGAATTTTa         >  1:2747576/1‑93 (MQ=255)
                                                                                 tCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAGGACACGGTGGTATTTTa         <  1:3352730/93‑1 (MQ=255)
                                                                                 tCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAGGACACGGTGGTATTTTa         <  1:3474558/93‑1 (MQ=255)
                                                                                 tCAGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAGGACACGGTGGTATTTTa         >  1:6569364/1‑93 (MQ=255)
                                                                                   aGTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAGGACACGGTGGTATTTTAGa       <  2:1121300/93‑1 (MQ=255)
                                                                                    gTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAGGACACGGTGGTATTTTAGAt      >  1:212257/1‑93 (MQ=255)
                                                                                    gTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAGGACACGGTGGTATTTTAGAt      <  2:3567362/93‑1 (MQ=255)
                                                                                    gTGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAGGACACGGTGGTATTTTAGAt      <  1:7665131/93‑1 (MQ=255)
                                                                                     tGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAGGACACGGTGGTATTTTAGATc     <  2:6940596/93‑1 (MQ=255)
                                                                                     tGCTCAGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAGGACACGGTGGTATTTTAGATc     >  1:1650287/1‑93 (MQ=255)
                                                                                        tCGGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAGGACACGGTGGTATTTTAGATCGTa  <  1:1360389/93‑1 (MQ=255)
                                                                                          |                                                                                          
TCATGGGGTTATGGCATGTGGGCGAATCTCGACGTCGCTCCCGTCACCTTACTCATTTGCTCTATTGTCGCAGCGTTAGCCTCAGTGCTCGGCGATCTGACCGAGAGTATGTTTAAGCGTGAAGCAGGAATTAAGGACAGCGGTCATTTAATTCCAGGACACGGTGGTATTTTAGATCGTA  >  NC_000913/196286‑196466

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: