BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,666,143	A→G	I258I (ATT→ATC)	hcaR ←	HcaR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,666,143	0	A	G	100.0%	847.8 / NA	265	I258I (ATT→ATC)	hcaR	HcaR
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (116/149); total (116/149)

Only 100 of 274 total aligned reads displayed.

CTGCACAATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCCCACCAGATTCATGGT  >  NC_000913/2666053‑2666235

cTGCACAATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGAt                                                                                            <  2:6947306/93‑1 (MQ=255)

 tGCACAATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATg                                                                                           <  1:941564/93‑1 (MQ=255)

   cacaATGGAAATTAAACCCCCTAATGCCGGCTTCACCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGAgggg                                                                                         <  2:5818164/93‑1 (MQ=255)

    acaATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGa                                                                                        <  2:3327173/93‑1 (MQ=255)

     caATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGAc                                                                                       <  1:4566231/93‑1 (MQ=255)

     caATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGAc                                                                                       <  1:1794838/93‑1 (MQ=255)

      aaTGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGAca                                                                                      >  2:4697485/1‑92 (MQ=255)

       aTGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGa                                                                                     >  1:1846949/1‑93 (MQ=255)

        tGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGaa                                                                                    >  2:4097252/1‑93 (MQ=255)

        aggCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGaa                                                                                    <  2:6365856/92‑1 (MQ=255)

         ggCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGaaa                                                                                   <  2:6139186/93‑1 (MQ=255)

            gATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAaac                                                                                <  2:7873579/93‑1 (MQ=255)

            gATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAaac                                                                                >  1:5893383/1‑93 (MQ=255)

            gATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAaac                                                                                >  2:2530906/1‑93 (MQ=255)

             aTGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCAAGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGACAaaca                                                                               >  1:7663983/1‑93 (MQ=255)

              tGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAaacaa                                                                              <  2:3640437/93‑1 (MQ=255)

               gAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAaacaac                                                                             <  1:4689620/93‑1 (MQ=255)

               gAAATCGCGTAATGCCGGCTTCATCTCCCCGTTCTTCCACTCCATCAGTAAAACAATGGAATGAACATCTCAGACGATGAGACGAAAcaccac                                                                             >  1:7804821/1‑93 (MQ=255)

                       gTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCgg                                                                     >  2:2570042/1‑93 (MQ=255)

                       gTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCgg                                                                     <  2:3832530/93‑1 (MQ=255)

                       gTAATGCCGGCTTCATCTCCCCTTTATTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGCCGACATACAACATGTCCgg                                                                     >  2:131103/1‑93 (MQ=255)

                        tAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGt                                                                    >  1:5418386/1‑93 (MQ=255)

                         aaTGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTa                                                                   <  2:1550342/93‑1 (MQ=255)

                         aaTGCCGGCTTCATCCCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTa                                                                   <  1:6332665/93‑1 (MQ=255)

                           tGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTAtt                                                                 >  1:7908560/1‑93 (MQ=255)

                           tGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTAtt                                                                 <  1:5056823/93‑1 (MQ=255)

                           tGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTAtt                                                                 <  2:1035590/93‑1 (MQ=255)

                           tGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTAtt                                                                 <  1:6163733/93‑1 (MQ=255)

                            gCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTa                                                                <  1:3866056/93‑1 (MQ=255)

                               ggCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTaaaa                                                             >  1:1545834/1‑93 (MQ=255)

                                gCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAat                                                            <  2:3187976/93‑1 (MQ=255)

                                  ttCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAatta                                                          >  2:1826088/1‑93 (MQ=255)

                                   tCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCCGTATTAAAattat                                                         >  1:5634935/1‑93 (MQ=255)

                                     aTCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTc                                                       <  1:2161902/93‑1 (MQ=255)

                                     aTCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTc                                                       <  1:3731611/93‑1 (MQ=255)

                                      tctcCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATATCCGGCGATGGGACGATAAACAACCTGCCCGGTAGTAAAATTATTCa                                                      >  2:7020370/1‑93 (MQ=255)

                                       ctcCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCat                                                     <  1:6490448/93‑1 (MQ=255)

                                       ctcCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCat                                                     <  1:1921929/93‑1 (MQ=255)

                                        tcCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCata                                                    <  1:2303939/93‑1 (MQ=255)

                                        tcCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCata                                                    <  2:5206323/93‑1 (MQ=255)

                                        tcCCCTTTCTTCCACGCCATCAGAAAAGCAATGGAAGGAACATTTCTTGCGATGGGCCGAGAAACAACCTCTACGGTATCAAACTTATTCata                                                    >  2:784262/1‑93 (MQ=255)

                                          cccTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCAtata                                                  <  1:3438355/93‑1 (MQ=255)

                                           ccTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATaa                                                 <  1:2767925/93‑1 (MQ=255)

                                            cTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAAc                                                <  2:5447166/93‑1 (MQ=255)

                                             tttCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAAcc                                               >  1:5338109/1‑93 (MQ=255)

                                              ttcttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCg                                              >  1:4278092/1‑93 (MQ=255)

                                                cttcCACGCTATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCggg                                            <  2:7374446/93‑1 (MQ=255)

                                                 ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGt                                           >  1:4044515/1‑93 (MQ=255)

                                                   ccACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTAt                                         <  1:1598243/93‑1 (MQ=255)

                                                    cACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATc                                        >  1:7526006/1‑93 (MQ=255)

                                                    cACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATc                                        <  2:5312091/93‑1 (MQ=255)

                                                      cGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCaa                                      <  1:6761722/93‑1 (MQ=255)

                                                      cGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCaa                                      <  1:7120972/93‑1 (MQ=255)

                                                       gCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCaaa                                     <  2:1434056/93‑1 (MQ=255)

                                                       gCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCaaa                                     <  2:1979173/93‑1 (MQ=255)

                                                       gCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCaaa                                     >  1:568890/1‑93 (MQ=255)

                                                       gCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCaaa                                     >  2:5110739/1‑93 (MQ=255)

                                                       gCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCaaa                                     >  2:3039150/1‑93 (MQ=255)

                                                        ccATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTATAATTATTCATATAACCGGGTATCAAAg                                    >  1:6943660/1‑93 (MQ=255)

                                                        ccATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAg                                    <  1:1009579/93‑1 (MQ=255)

                                                         cATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGt                                   <  2:6597843/93‑1 (MQ=255)

                                                         cATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGt                                   >  1:5838543/1‑93 (MQ=255)

                                                           tCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGa                                 >  1:7497794/1‑93 (MQ=255)

                                                           tCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGa                                 <  1:3082673/93‑1 (MQ=255)

                                                           tCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGa                                 <  2:3474496/93‑1 (MQ=255)

                                                           tCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGa                                 >  1:7397682/1‑93 (MQ=255)

                                                            cAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGAc                                <  1:6024271/93‑1 (MQ=255)

                                                            cAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGAc                                <  1:3250709/93‑1 (MQ=255)

                                                            cAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGAc                                <  1:4077728/93‑1 (MQ=255)

                                                             aGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACg                               <  2:4530692/93‑1 (MQ=255)

                                                                aaaGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGccc                            >  2:2210902/1‑93 (MQ=255)

                                                                aaaGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGccc                            <  2:1375931/93‑1 (MQ=255)

                                                                 aaGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCa                           <  2:3242382/93‑1 (MQ=255)

                                                                 aaGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCa                           <  2:4380985/93‑1 (MQ=255)

                                                                     aaTGGAAGGCACATTTCCGGCGATGGGACGGAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCACAGTAACGCCCAGcgc                       >  2:5403552/1‑91 (MQ=255)

                                                                     aaTGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGccc                       >  2:2273317/1‑93 (MQ=255)

                                                                      aTGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGcccc                      >  2:4596736/1‑93 (MQ=255)

                                                                      aTGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGcccc                      >  2:4873110/1‑93 (MQ=255)

                                                                       tGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGcccct                     >  1:5097477/1‑92 (MQ=255)

                                                                       tGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCa                     <  2:6859742/93‑1 (MQ=255)

                                                                       tGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCa                     <  1:6245621/93‑1 (MQ=255)

                                                                         gAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATg                   >  2:7551381/1‑93 (MQ=255)

                                                                         gAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATg                   >  1:5487128/1‑93 (MQ=255)

                                                                            ggCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGccc                <  2:1158880/93‑1 (MQ=255)

                                                                            ggCACATTTCCGGCGATGGGACGAAAAACAACCTATCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGccc                >  2:4956942/1‑93 (MQ=255)

                                                                               acaTTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCccacc             >  1:7022066/1‑93 (MQ=255)

                                                                                caTTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCccacca            <  1:4912766/93‑1 (MQ=255)

                                                                                caTTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCccacca            >  2:5028149/1‑93 (MQ=255)

                                                                                caTTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCccacca            >  1:4520944/1‑93 (MQ=255)

                                                                                  tttCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCCCACCAGa          <  2:6069529/93‑1 (MQ=255)

                                                                                  tttCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCCCACCAGa          <  2:2749439/93‑1 (MQ=255)

                                                                                  tttCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCCCACCAGa          <  2:1676064/93‑1 (MQ=255)

                                                                                  tttCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCCCACCAGa          <  1:1218449/93‑1 (MQ=255)

                                                                                   ttCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCCCACCAGAt         >  2:2997517/1‑93 (MQ=255)

                                                                                    tCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCCCACCAGAtt        >  2:5614610/1‑93 (MQ=255)

                                                                                      cGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCCCACCAGATTCa      >  2:462572/1‑93 (MQ=255)

                                                                                      cGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCCCACCAGATTCa      <  1:2643720/93‑1 (MQ=255)

                                                                                       ggCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCCCACCAGATTCAt     <  2:4199035/93‑1 (MQ=255)

                                                                                       ggCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCCCACCAGATTCAt     <  2:2645596/93‑1 (MQ=255)

                                                                                       ggCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCCCACCAGATTCAt     <  2:7638722/93‑1 (MQ=255)

CTGCACAATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCCCACCAGATTCATGGT  >  NC_000913/2666053‑2666235

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`