BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,754,691	T→C	V171A (GTT→GCT)	intA →	prophage CP4‑57 integrase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,754,691	0	T	C	100.0%	907.4 / NA	286	V171A (GTT→GCT)	intA	prophage CP4‑57 integrase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (135/151); total (135/151)

Only 100 of 290 total aligned reads displayed.

AATCGGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGTTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATCGGAA  >  NC_000913/2754602‑2754780

 aTCGGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTcgc                                                                                       <  1:4598147/93‑1 (MQ=255)

 aTCGGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTcgc                                                                                       >  2:6580167/1‑93 (MQ=255)

   cGGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTcgccg                                                                                     >  2:2658673/1‑93 (MQ=255)

    ggTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTcgccgc                                                                                    >  1:4870669/1‑93 (MQ=255)

     gTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCgccgcc                                                                                   >  2:687948/1‑93 (MQ=255)

     gTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCACCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCgccgcc                                                                                   <  1:3466183/93‑1 (MQ=255)

      tGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCt                                                                                  <  2:7164323/93‑1 (MQ=255)

      tGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCt                                                                                  >  1:2615995/1‑93 (MQ=255)

      tGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCt                                                                                  >  2:4698849/1‑93 (MQ=255)

       gATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCtt                                                                                 >  2:1215126/1‑93 (MQ=255)

          atCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGt                                                                              <  1:2108966/93‑1 (MQ=255)

           tCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTc                                                                             <  2:3116597/93‑1 (MQ=255)

           tCAGTATCACTGAGATTAAGGCGCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCTATTGGTGCAGTAGAGACTGCTCGCCGCCTCTGTc                                                                             >  2:7017868/1‑93 (MQ=255)

            cAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCa                                                                            >  2:3889710/1‑93 (MQ=255)

            cAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCa                                                                            <  1:1625597/93‑1 (MQ=255)

            cAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTACAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCa                                                                            <  1:5694217/93‑1 (MQ=255)

             aGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAg                                                                           >  1:5816138/1‑93 (MQ=255)

              gTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGc                                                                          >  2:3740167/1‑93 (MQ=255)

              gTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGc                                                                          >  2:3256270/1‑93 (MQ=255)

              gTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGc                                                                          >  1:4376028/1‑93 (MQ=255)

               tATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCg                                                                         <  1:4120238/93‑1 (MQ=255)

                 tCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTa                                                                       >  1:7231622/1‑93 (MQ=255)

                 tCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTa                                                                       >  1:4688593/1‑93 (MQ=255)

                   aCTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCCGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTAtt                                                                     >  2:6064034/1‑93 (MQ=255)

                    cTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTa                                                                    <  1:5757050/93‑1 (MQ=255)

                      gagaTTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAAc                                                                  >  1:1036312/1‑93 (MQ=255)

                       agaTTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACg                                                                 >  1:3723414/1‑93 (MQ=255)

                         aTTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGaa                                                               <  1:7387251/93‑1 (MQ=255)

                         aTTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGaa                                                               <  2:6328690/93‑1 (MQ=255)

                         aTTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGaa                                                               <  2:5643731/93‑1 (MQ=255)

                         aTTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGaa                                                               >  2:2521181/1‑93 (MQ=255)

                          ttAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAg                                                              <  1:4468219/93‑1 (MQ=255)

                          ttAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAg                                                              >  2:7610966/1‑93 (MQ=255)

                           tAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGt                                                             <  1:7643343/93‑1 (MQ=255)

                             aGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCa                                                           <  2:7577926/93‑1 (MQ=255)

                             aGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCa                                                           <  1:4020133/93‑1 (MQ=255)

                              ggCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGCAGTCAt                                                          >  1:4197234/1‑93 (MQ=255)

                                cTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCAATAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGa                                                        <  1:4784120/93‑1 (MQ=255)

                                   aTACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGAttt                                                     >  2:4788993/1‑93 (MQ=255)

                                   aTACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGAttt                                                     >  2:2944814/1‑93 (MQ=255)

                                    tACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTa                                                    <  2:2339987/93‑1 (MQ=255)

                                    tACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTa                                                    <  2:2053583/93‑1 (MQ=255)

                                    tACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTa                                                    <  1:2829109/93‑1 (MQ=255)

                                    tACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTa                                                    >  1:1817554/1‑93 (MQ=255)

                                     aCTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTAt                                                   >  1:1945871/1‑93 (MQ=255)

                                     aCTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTAt                                                   >  1:307576/1‑93 (MQ=255)

                                     aCTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTAt                                                   <  1:1743026/93‑1 (MQ=255)

                                      ctctGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATg                                                  <  1:7074049/93‑1 (MQ=255)

                                       tctGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATgc                                                 <  2:3207920/93‑1 (MQ=255)

                                       tctGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATgc                                                 >  2:741302/1‑93 (MQ=255)

                                       tctGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGCCATGATTTATgc                                                 >  2:6226356/1‑93 (MQ=255)

                                        ctGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATgcg                                                >  1:961982/1‑93 (MQ=255)

                                            ttAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGa                                            >  2:5069204/1‑93 (MQ=255)

                                            ttAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGa                                            >  2:1747680/1‑93 (MQ=255)

                                             tAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGaa                                           <  2:4415874/93‑1 (MQ=255)

                                              aaaGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAac                                          <  2:49730/93‑1 (MQ=255)

                                              aaaGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAac                                          <  1:1003357/93‑1 (MQ=255)

                                              aaaGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAac                                          >  1:123584/1‑93 (MQ=255)

                                              aaaGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAac                                          <  2:1190084/93‑1 (MQ=255)

                                               aaGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAaca                                         >  2:6776860/1‑93 (MQ=255)

                                                aGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGCGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAacac                                        >  2:7749979/1‑93 (MQ=255)

                                                 gCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAAcaca                                       <  2:1425406/93‑1 (MQ=255)

                                                  cAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAg                                      <  2:4935050/93‑1 (MQ=255)

                                                  cAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAg                                      <  1:531504/93‑1 (MQ=255)

                                                   aGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAgg                                     <  2:4557484/93‑1 (MQ=255)

                                                   aGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAgg                                     <  2:939702/93‑1 (MQ=255)

                                                    gTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACGCAGGc                                    <  2:6546312/93‑1 (MQ=255)

                                                    gTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGc                                    >  2:3625752/1‑93 (MQ=255)

                                                     gtCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGcc                                   <  1:4335880/92‑1 (MQ=255)

                                                      tCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCt                                  >  2:598187/1‑93 (MQ=255)

                                                         gCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCtgat                               <  1:6155654/93‑1 (MQ=255)

                                                         gCCGGTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCtgat                               <  1:6513630/93‑1 (MQ=255)

                                                            ggTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGAGCAGAACACAGGCCtgattga                            >  2:426693/1‑93 (MQ=255)

                                                            cgTTCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCtgattga                            <  1:6720310/92‑1 (MQ=255)

                                                              ttCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATg                          >  1:2507170/1‑93 (MQ=255)

                                                              ttCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATg                          >  1:5564807/1‑93 (MQ=255)

                                                              ttCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATg                          >  1:6293624/1‑93 (MQ=255)

                                                               tCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGc                         <  1:3904904/93‑1 (MQ=255)

                                                               tCAGGCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGc                         <  2:4661865/93‑1 (MQ=255)

                                                                   gCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGtt                     <  2:3532649/93‑1 (MQ=255)

                                                                   gCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGtt                     <  2:1577330/93‑1 (MQ=255)

                                                                   gCCAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGtt                     >  2:4225454/1‑93 (MQ=255)

                                                                     cAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTcc                   <  2:5423242/93‑1 (MQ=255)

                                                                     cAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTcc                   >  1:7008530/1‑93 (MQ=255)

                                                                     cAGAGGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTcc                   <  1:3645850/93‑1 (MQ=255)

                                                                       gagGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTa                 <  1:849283/93‑1 (MQ=255)

                                                                       gagGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTa                 >  2:7868898/1‑93 (MQ=255)

                                                                       gagGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTa                 <  2:3945384/93‑1 (MQ=255)

                                                                        agGTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAg                <  2:3393839/93‑1 (MQ=255)

                                                                         ggTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAgt               <  1:3795733/93‑1 (MQ=255)

                                                                          gTGCATTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAgtg              >  1:3289283/1‑93 (MQ=255)

                                                                              aTTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGTCATGATTGATGCTGTTCCTAGTGTaaa          <  2:6462511/93‑1 (MQ=255)

                                                                              aTTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTaaa          <  1:2371670/93‑1 (MQ=255)

                                                                              aTTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTaaa          >  1:5393293/1‑93 (MQ=255)

                                                                              aTTAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTaaa          <  2:2665802/93‑1 (MQ=255)

                                                                               ttAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAat         >  2:4021452/1‑93 (MQ=255)

                                                                                tAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAata        <  1:7782890/93‑1 (MQ=255)

                                                                                tAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAata        <  2:197744/93‑1 (MQ=255)

                                                                                tAGAGACTGCTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAata        <  1:4767040/93‑1 (MQ=255)

                                                                                   agaCTGCTCGCCGCCTTTGTAAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATCg     <  1:6229088/93‑1 (MQ=255)

AATCGGTGATATCAGTATCACTGAGATTAAGGCTCATACTCTGGTTAAAGCAGTTCAGCCGGTTCAGGCCAGAGGTGCATTAGAGACTGTTCGCCGCCTTTGTCAGCGTATTAACGAAGTCATGATTTATGCGCAGAACACAGGCCTGATTGATGCTGTTCCTAGTGTAAATATCGGAA  >  NC_000913/2754602‑2754780

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`