Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 2,925,821 | T→C | intergenic (+127/‑430) | ygdH → / → sdaC | hypothetical protein/putative serine transporter |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 2,925,821 | 0 | T | C | 99.4% | 1113.2 / ‑3.8 | 349 | intergenic (+127/‑430) | ygdH/sdaC | hypothetical protein/putative serine transporter |
Reads supporting (aligned to +/- strand): ref base T (0/2); new base C (186/161); total (186/163) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.17e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.54e-01 |
Only 100 of 361 total aligned reads displayed.
CTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAATATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGAT > NC_000913/2925731‑2925910 | ctcGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAacat > 1:141777/1‑93 (MQ=255) ctcGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAacat < 2:4027881/93‑1 (MQ=255) tcGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATg > 1:1178047/1‑93 (MQ=255) gTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTc > 1:7771111/1‑93 (MQ=255) tttttGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCa > 1:3718945/1‑93 (MQ=255) ttGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATAc < 1:7458940/93‑1 (MQ=255) gTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAAt > 1:3049453/1‑93 (MQ=255) tCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAAtt < 1:974149/93‑1 (MQ=255) tCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAAtt > 2:1287858/1‑93 (MQ=255) aCTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTa < 2:265864/93‑1 (MQ=255) aCTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTa < 1:6820720/93‑1 (MQ=255) aCTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTa < 1:2768747/93‑1 (MQ=255) aCTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTa < 2:5699881/93‑1 (MQ=255) cTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTAt < 2:1963538/93‑1 (MQ=255) cTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTAt > 2:6282323/1‑93 (MQ=255) cTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTAt < 1:4337120/93‑1 (MQ=255) cTTACTCATCAACTCATTTCATGTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTAt < 1:4942857/93‑1 (MQ=255) cTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTg > 2:3277716/1‑93 (MQ=255) catcaACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCa < 2:2113478/93‑1 (MQ=255) catcaACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCa > 2:1863540/1‑93 (MQ=255) catcaACTCATTTCATTTGTTATATGAATGCTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCa < 2:7730167/93‑1 (MQ=255) atcaACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCaa < 1:4246469/93‑1 (MQ=255) tcaACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAAc < 1:7129280/93‑1 (MQ=255) tcaACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAAc < 2:5385931/93‑1 (MQ=255) tcaACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAAc > 1:7826755/1‑93 (MQ=255) aaCTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGc < 2:7511689/93‑1 (MQ=255) aCTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCa > 2:5206110/1‑93 (MQ=255) aCTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCa < 1:1270190/93‑1 (MQ=255) cTCATTTCATTTGTTATATGAATGTTTCTTCCCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCaa < 1:2047601/93‑1 (MQ=255) cTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCaa > 2:5259547/1‑93 (MQ=255) tcatttcattTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCaaa < 2:1648624/93‑1 (MQ=255) tcatttcattTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCaaa < 1:824552/93‑1 (MQ=255) tcatttcattTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCaaa < 1:6186187/93‑1 (MQ=255) catttcatttGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAAc < 1:178799/93‑1 (MQ=255) catttcatttGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAAc < 1:2324590/93‑1 (MQ=255) catttcatttGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAAc < 1:7550792/93‑1 (MQ=255) tttcatttGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGt > 1:5021576/1‑93 (MQ=255) tcatttGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGttt > 1:6591672/1‑93 (MQ=255) tcatttGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGttt > 1:6730832/1‑93 (MQ=255) catttGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTc < 1:5115651/93‑1 (MQ=255) atttGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTcc < 1:1563873/93‑1 (MQ=255) tttGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTccc < 1:5731926/93‑1 (MQ=255) tttGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTccc > 1:4506755/1‑93 (MQ=255) tttGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTccc < 1:6322794/93‑1 (MQ=255) tttGTTAAATGAAGTTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTccc < 2:5824067/93‑1 (MQ=255) gTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTAt < 2:2286213/93‑1 (MQ=255) gTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTAt > 1:4686265/1‑93 (MQ=255) ttATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTAtt < 1:6910586/93‑1 (MQ=255) ttATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTAtt > 2:4467574/1‑93 (MQ=255) tataTGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTAttt < 2:291406/93‑1 (MQ=255) atatGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTAtttt > 2:2742282/1‑93 (MQ=255) tatGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTc > 1:5984060/1‑93 (MQ=255) atGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCa > 2:6857065/1‑93 (MQ=255) tGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCAt < 2:2421423/93‑1 (MQ=255) aaTGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATaa < 1:5170812/93‑1 (MQ=255) aTGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATaaa < 1:2449012/93‑1 (MQ=255) gTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAAcc > 2:4206362/1‑93 (MQ=255) gTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAAcc > 2:6388049/1‑93 (MQ=255) gTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAAcc > 2:6129227/1‑93 (MQ=255) gTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAAcc < 2:4403215/93‑1 (MQ=255) tttCTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCg > 1:1020068/1‑93 (MQ=255) cTTACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTAt > 1:6083036/1‑93 (MQ=255) ttACCACCCTCACGCGACAATTATCATCACAGTTAACATGTCATACAATTTATGTTACAACGCAAACGTTTCCCTATTTTCATAAACCGTAtt > 2:2217249/1‑93 (MQ=255) ttACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTAtt > 2:7182465/1‑93 (MQ=255) tACCACCCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTAttt < 2:7852178/93‑1 (MQ=255) accaccCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTAtttt < 1:2730946/93‑1 (MQ=255) ccaccCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTa < 2:6591386/93‑1 (MQ=255) ccaccCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTa < 2:1819937/93‑1 (MQ=255) caccCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTAt > 1:3786329/1‑93 (MQ=255) ccccTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATc < 2:6726669/92‑1 (MQ=255) ccccTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATc < 2:471274/92‑1 (MQ=255) accCTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATc > 1:4095382/1‑93 (MQ=255) cccTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCg > 2:3537172/1‑93 (MQ=255) cccTCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCg > 1:6468844/1‑93 (MQ=255) tCACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTa < 2:5483287/93‑1 (MQ=255) cACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTAt < 2:5927678/93‑1 (MQ=255) cACGCGACAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTAt > 2:2605951/1‑93 (MQ=255) cgACAAATATCATCACAGTTAACATGTCATACAGTTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGaaa < 1:7630007/93‑1 (MQ=255) cAAATATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAg < 1:6607383/93‑1 (MQ=255) aaaTATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGa > 1:3891651/1‑93 (MQ=255) aaaTATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGa > 2:1062290/1‑93 (MQ=255) aaaTATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGa > 2:1977837/1‑93 (MQ=255) aaTATCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGaa > 2:3815169/1‑93 (MQ=255) atatCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGaaa < 1:2908031/93‑1 (MQ=255) tatCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAAt < 2:4528115/93‑1 (MQ=255) tatCATCACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAAt < 1:5388770/93‑1 (MQ=255) atcatcACAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAAtt < 1:7341622/93‑1 (MQ=255) tcatcaCAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTa < 2:5160128/93‑1 (MQ=255) tcatcaCAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTa < 2:5020550/93‑1 (MQ=255) tcatcaCAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTa > 2:1203621/1‑93 (MQ=255) tcatcaCAGTTAACATGTCATACAATTTATGATGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTa > 1:3510688/1‑93 (MQ=255) atcaCAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATc > 1:2547967/1‑93 (MQ=255) atcaCAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATc < 2:4345777/93‑1 (MQ=255) atcaCAGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATc < 2:4054125/93‑1 (MQ=255) cacaGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGc > 1:7227664/1‑93 (MQ=255) caGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCa > 1:5669631/1‑93 (MQ=255) aGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCAt < 2:4836540/93‑1 (MQ=255) aGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCAt < 1:3257752/93‑1 (MQ=255) aGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCAt > 1:3579236/1‑93 (MQ=255) aGTTAACATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCAt < 2:828213/93‑1 (MQ=255) | CTCGTTTTTGGTCACTTACTCATCAACTCATTTCATTTGTTATATGAATGTTTCTTACCACCCTCACGCGACAAATATCATCACAGTTAATATGTCATACAATTTATGTTGCAACGCAAACGTTTCCCTATTTTCATAAACCGTATTTTATCGCTATGAAAAAGAAATTATCGCCATGAT > NC_000913/2925731‑2925910 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |