Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,208,639 T→C intergenic (+2/‑109) rpsU → / → dnaG 30S ribosomal subunit protein S21/DNA primase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,208,6390TC99.4% 983.9 / ‑4.1 322intergenic (+2/‑109)rpsU/dnaG30S ribosomal subunit protein S21/DNA primase
Reads supporting (aligned to +/- strand):  ref base T (1/1);  new base C (137/181);  total (140/182)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.92e-01

Only 100 of 359 total aligned reads displayed.

CCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTATTTTCGTTTATGAA  >  NC_000913/3208549‑3208728
                                                                                          |                                                                                         
ccGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGCGAAAAAGCACGCCGCACTCGTCTGTACTAATccc                                                                                         >  2:5682725/1‑93 (MQ=255)
  gAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCcccc                                                                                       >  1:7229429/1‑93 (MQ=255)
   aaCGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGCGAAAAAGCACGCCGCACCCGTCTGTACTAATCccccc                                                                                      >  1:817006/1‑92 (MQ=255)
    aCGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCga                                                                                     <  1:208279/93‑1 (MQ=255)
      gTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTATGTACTAATCCCCCgagg                                                                                   >  1:5916220/1‑92 (MQ=255)
       tAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGagag                                                                                  >  1:999383/1‑93 (MQ=255)
       tAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGCGAAAAAGCACGCCGCACTCGTCTGTACTAATCCCCCGagag                                                                                  >  1:2963175/1‑93 (MQ=255)
        aaGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGc                                                                                 <  2:7847621/93‑1 (MQ=255)
        aaGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCCAGAGc                                                                                 >  2:1241858/1‑93 (MQ=255)
         aGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCg                                                                                <  1:7398629/93‑1 (MQ=255)
         aGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCg                                                                                <  2:6646905/93‑1 (MQ=255)
          gcgcgcTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGt                                                                               <  2:6538825/93‑1 (MQ=255)
            gcgcTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCCCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCCGCAGCGttc                                                                             >  2:5773855/1‑92 (MQ=255)
             cgcTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGc                                                                            >  1:1036992/1‑93 (MQ=255)
              gcTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGCGGAAAAGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGct                                                                           >  1:262708/1‑93 (MQ=255)
               cTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGctc                                                                          <  2:4098432/93‑1 (MQ=255)
               cTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGctc                                                                          <  2:5116859/93‑1 (MQ=255)
               cTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACCCGTCTGTACTAATCCCCCGAGAGCGTTGctc                                                                          >  1:6339480/1‑93 (MQ=255)
                 aaaGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCtctc                                                                        <  2:2172877/93‑1 (MQ=255)
                  aaGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTcc                                                                       <  1:2709928/93‑1 (MQ=255)
                   aGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCCAGAGCGTTGCTCTCCg                                                                      >  2:5443624/1‑93 (MQ=255)
                    gCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGa                                                                     <  2:1387804/93‑1 (MQ=255)
                      ttCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATc                                                                   <  2:4418706/93‑1 (MQ=255)
                      ttCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATc                                                                   <  1:1582505/93‑1 (MQ=255)
                       tCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCa                                                                  <  1:726313/93‑1 (MQ=255)
                          gCAGTGAAACGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGAc                                                               <  2:350292/93‑1 (MQ=255)
                          gCAGTGAAACGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGAc                                                               <  2:2874873/93‑1 (MQ=255)
                          acAGTGAAACCTCACGCGAAGAACCTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGAc                                                               <  2:5980480/92‑1 (MQ=255)
                           cAGTGAAACGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGAcc                                                              <  1:1477784/93‑1 (MQ=255)
                           cAGTGAAACGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGAcc                                                              <  1:1812398/93‑1 (MQ=255)
                             gTGAAACGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGa                                                            <  2:1698626/93‑1 (MQ=255)
                              tGAAACGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTTCGATCAGGCCGag                                                           >  1:7680053/1‑93 (MQ=255)
                                  aCGTCACGCGAAGAAACTGACTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGagttgt                                                       <  1:2862006/93‑1 (MQ=255)
                                   cGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGagttgta                                                      <  1:4430309/93‑1 (MQ=255)
                                   cGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGagttgta                                                      <  2:3795070/93‑1 (MQ=255)
                                   cGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGGTGCTCTCCGATCAGACCGaggtgta                                                      >  2:4332443/1‑93 (MQ=255)
                                    gTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGagttgtag                                                     >  2:876297/1‑93 (MQ=255)
                                     tCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCTGATCAGGCCGaggtgtagt                                                    >  1:6993562/1‑93 (MQ=255)
                                     tCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGagttgtagt                                                    <  2:7800161/93‑1 (MQ=255)
                                     tCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGagttgtagt                                                    <  2:6079682/93‑1 (MQ=255)
                                        cgcgAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGagttgtagttgt                                                 >  2:2058085/1‑93 (MQ=255)
                                         gcgAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAgttgtagttgta                                                <  2:3056294/93‑1 (MQ=255)
                                          cgAAGAATCTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAAGCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTaa                                               <  1:492461/93‑1 (MQ=255)
                                          cgAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGGCCGAGTTGTAGTTGTaa                                               <  2:3653235/93‑1 (MQ=255)
                                          cgAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTaa                                               <  2:2315278/93‑1 (MQ=255)
                                           gaagaaACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAg                                              <  1:688534/93‑1 (MQ=255)
                                           gaagaaACTGGCTCGCGAAAACGCAAGCCGCCCTCCTCTGTACTAATCCCCCGCGAGCGTTGCTTTCCGATCAGACCCAGTTGTAGTTGTAAg                                              >  2:7624466/1‑93 (MQ=255)
                                            aagaaACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGCGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAgg                                             >  1:6465545/1‑93 (MQ=255)
                                              gaaACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGcc                                           <  2:3208464/93‑1 (MQ=255)
                                              gaaACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGcc                                           <  1:3146281/93‑1 (MQ=255)
                                                aaCTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGt                                         <  1:5243542/93‑1 (MQ=255)
                                                aaCTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGt                                         <  1:46558/93‑1 (MQ=255)
                                                aaCTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGt                                         <  1:3948608/93‑1 (MQ=255)
                                                  cTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGc                                       <  2:2748956/93‑1 (MQ=255)
                                                   tGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCt                                      >  1:6431724/1‑93 (MQ=255)
                                                     gCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTc                                    <  2:4566880/93‑1 (MQ=255)
                                                      cTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTcc                                   <  2:4860366/93‑1 (MQ=255)
                                                          cgAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGaaa                               <  2:7712916/93‑1 (MQ=255)
                                                           gAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAg                              >  1:7173470/1‑93 (MQ=255)
                                                           gAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAg                              <  2:3888132/93‑1 (MQ=255)
                                                           gAAAACGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAg                              <  1:1723636/93‑1 (MQ=255)
                                                             aaaCGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGa                            >  2:4971633/1‑93 (MQ=255)
                                                             aaaCGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGa                            >  1:4282880/1‑93 (MQ=255)
                                                              aaCGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGaa                           >  1:7131136/1‑93 (MQ=255)
                                                              aaCGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGaa                           <  1:6722648/93‑1 (MQ=255)
                                                              aaCGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGaa                           <  1:5530450/93‑1 (MQ=255)
                                                              aaCGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGaa                           <  2:7447941/93‑1 (MQ=255)
                                                              aaCGCACGCCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGaa                           <  1:364260/93‑1 (MQ=255)
                                                               acgcacgcCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAAt                          <  1:640145/93‑1 (MQ=255)
                                                               acgcacgcCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAAt                          <  1:5393088/93‑1 (MQ=255)
                                                                cgcacgcCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATg                         <  1:3348164/93‑1 (MQ=255)
                                                                 gcacgcCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATgc                        >  2:1596152/1‑93 (MQ=255)
                                                                 gcacgcCGCACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATgc                        <  2:3243859/93‑1 (MQ=255)
                                                                    cgccgcACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGcgcg                     >  2:7158522/1‑93 (MQ=255)
                                                                     gccgcACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCgg                    >  2:6305642/1‑93 (MQ=255)
                                                                        gcACTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCtt                 <  2:5522942/93‑1 (MQ=255)
                                                                          aCTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTAt               <  2:5183802/93‑1 (MQ=255)
                                                                          aCTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTAt               >  2:1782186/1‑93 (MQ=255)
                                                                           cTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTAtt              <  1:7513552/93‑1 (MQ=255)
                                                                           cTCGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTAtt              <  1:4691299/93‑1 (MQ=255)
                                                                             cGTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTAtttt            <  1:4110133/93‑1 (MQ=255)
                                                                              gTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTATTTTc           <  1:1328779/93‑1 (MQ=255)
                                                                              gTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTATTTTc           <  2:5332557/93‑1 (MQ=255)
                                                                              gTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTATTTTc           >  2:7352643/1‑93 (MQ=255)
                                                                              gTCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTATTTTc           <  1:4139981/93‑1 (MQ=255)
                                                                              gTCTGTACTAAACCCCCGAGAGCGTTGCGCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTATTTTc           <  1:5624927/93‑1 (MQ=255)
                                                                               tCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTATTTTCg          >  1:6242493/1‑93 (MQ=255)
                                                                               tCTGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTAGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTTTTTTCg          >  2:7024583/1‑93 (MQ=255)
                                                                                 tGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTATTTTCGtt        >  2:6860038/1‑93 (MQ=255)
                                                                                 tGTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTATTTTCGtt        <  2:7130874/93‑1 (MQ=255)
                                                                                  gTACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTATTTTCGttt       <  2:4798999/93‑1 (MQ=255)
                                                                                   tACTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTATTTTCGTTTa      >  2:6177262/1‑93 (MQ=255)
                                                                                    aCTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTATTTTCGTTTAt     <  2:4502132/93‑1 (MQ=255)
                                                                                    aCTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTATTTTCGTTTAt     <  2:638368/93‑1 (MQ=255)
                                                                                    aCTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGGTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTATTTTCGTTTAt     >  2:2463193/1‑93 (MQ=255)
                                                                                     cTAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTATTTTCGTTTATg    >  1:113662/1‑93 (MQ=255)
                                                                                      tAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTATTTTCGTTTATGa   >  1:2358761/1‑93 (MQ=255)
                                                                                      tAATCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTATTTTCGTTTATGa   <  2:2599661/93‑1 (MQ=255)
                                                                                       aaTCCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTATTTTCGTTTATGaa  <  1:5321835/93‑1 (MQ=255)
                                                                                       aaTCCCCCGAGAGCGTTGCTCTCCGATCAGACAGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTATTTTCGTTTATGaa  <  1:6057230/93‑1 (MQ=255)
                                                                                          |                                                                                         
CCGAACGTAAGCGCGCTAAAGCTTCTGCAGTGAAACGTCACGCGAAGAAACTGGCTCGCGAAAACGCACGCCGCACTCGTCTGTACTAATTCCCCGAGAGCGTTGCTCTCCGATCAGACCGAGTTGTAGTTGTAAGGCCGTGCTTCCGAAAGGAATGCGCGGCTTATTTTCGTTTATGAA  >  NC_000913/3208549‑3208728

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: