BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,820,144	Δ1 bp	intergenic (+24/+18)	b4542 → / ← oraA	hypothetical protein/OraA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,820,143	0	G	.	100.0%	704.3 / NA	153	intergenic (+23/+19)	b4542/oraA	hypothetical protein/OraA
Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (81/72); total (81/72)

Only 100 of 161 total aligned reads displayed.

GCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGC  >  NC_000913/2820051‑2820231

 cTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAgt                                                                                         >  1:4667526/1‑92 (MQ=255)

  tAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAgta                                                                                        >  1:1381138/1‑91 (MQ=255)

   aaCGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAgtaa                                                                                       >  1:2364517/1‑90 (MQ=255)

    aCGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAgtaaa                                                                                      >  1:4409498/1‑89 (MQ=255)

     cGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTaaaa                                                                                    >  1:4497378/1‑93 (MQ=255)

       aaaTATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATa                                                                                  >  2:1354803/1‑93 (MQ=255)

       aaaTATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATa                                                                                  >  1:2206849/1‑93 (MQ=255)

        aaTATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATAc                                                                                 <  2:3708056/93‑1 (MQ=255)

         atatCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATAcc                                                                                <  2:940004/93‑1 (MQ=255)

         atatCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATAcc                                                                                >  1:3883428/1‑93 (MQ=255)

         atatCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATAcc                                                                                >  1:3198315/1‑93 (MQ=255)

          tatCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCg                                                                               <  2:104603/93‑1 (MQ=255)

          tatCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCg                                                                               >  1:3599618/1‑93 (MQ=255)

          tatCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCg                                                                               >  2:2625733/1‑93 (MQ=255)

           atCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGt                                                                              <  1:276120/93‑1 (MQ=255)

            tCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTa                                                                             >  1:372172/1‑93 (MQ=255)

            gcggcacgaGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTa                                                                             <  1:1487617/89‑1 (MQ=255)

              gCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATg                                                                           >  1:1015962/1‑93 (MQ=255)

              gCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATg                                                                           >  2:2819153/1‑93 (MQ=255)

               ccaccaGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGc                                                                          >  2:2931026/1‑93 (MQ=255)

               ccaccaGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGc                                                                          <  1:3503231/93‑1 (MQ=255)

                caccaGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCg                                                                         <  1:36435/93‑1 (MQ=255)

                   caGCTCCAGCGTGTCTTAACCTCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTc                                                                      <  1:1994256/93‑1 (MQ=255)

                   caGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTc                                                                      <  1:2335722/93‑1 (MQ=255)

                    aGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCa                                                                     <  1:1218136/93‑1 (MQ=255)

                    aGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCa                                                                     <  1:587808/93‑1 (MQ=255)

                     gCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAg                                                                    >  1:4068098/1‑93 (MQ=255)

                      cTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGt                                                                   <  1:2423869/93‑1 (MQ=255)

                        ccAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCg                                                                 <  1:3477113/93‑1 (MQ=255)

                         cAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCgg                                                                >  1:2998054/1‑93 (MQ=255)

                              tgtCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCaaaa                                                           <  1:3573861/93‑1 (MQ=255)

                               gtCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAAt                                                          >  2:2391198/1‑93 (MQ=255)

                               gtCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAAt                                                          <  1:2535754/93‑1 (MQ=255)

                                tCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAAtt                                                         <  2:123355/93‑1 (MQ=255)

                                 cTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAAttt                                                        >  2:4415673/1‑93 (MQ=255)

                                 cTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAAttt                                                        <  1:68775/93‑1 (MQ=255)

                                  ttAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTc                                                       <  2:602902/93‑1 (MQ=255)

                                  ttAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTc                                                       >  1:8983/1‑93 (MQ=255)

                                        gccgGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCaaa                                                 <  2:3255345/93‑1 (MQ=255)

                                        gccgGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCATTCAGTCGGCAAAATTTCGCCaaa                                                 >  2:4598591/1‑93 (MQ=255)

                                          cgGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAAtc                                               <  1:3429544/93‑1 (MQ=255)

                                          cgGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAAtc                                               <  1:3615315/93‑1 (MQ=255)

                                           gggCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAAtat                                              >  1:1868405/1‑91 (MQ=255)

                                            ggCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAAtctc                                             >  2:1886160/1‑93 (MQ=255)

                                               tGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTg                                          <  1:745177/93‑1 (MQ=255)

                                               tGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTg                                          <  2:4313399/93‑1 (MQ=255)

                                               tGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTg                                          <  2:2868772/93‑1 (MQ=255)

                                               tGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTg                                          <  1:2871696/93‑1 (MQ=255)

                                               tGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTg                                          >  1:2111958/1‑93 (MQ=255)

                                               tGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTg                                          <  1:3847607/93‑1 (MQ=255)

                                                 gTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGa                                        <  2:4208319/93‑1 (MQ=255)

                                                  tAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGat                                       >  1:1770411/1‑93 (MQ=255)

                                                   aaCTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGata                                      <  1:3218085/93‑1 (MQ=255)

                                                    aCTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCATTCTGCAAAAATTCGCCCAATCTCCTCTatat                                     >  2:4509196/1‑93 (MQ=255)

                                                    aCTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGatat                                     >  2:2789016/1‑93 (MQ=255)

                                                    aCTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGatat                                     >  1:3105164/1‑93 (MQ=255)

                                                       gAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCtt                                  >  1:1993035/1‑93 (MQ=255)

                                                        aaaaGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTc                                 <  2:4059588/93‑1 (MQ=255)

                                                           aGTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTACTGGATATCTTCCAt                              >  2:1476792/1‑93 (MQ=255)

                                                            gTGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATc                             <  1:382037/93‑1 (MQ=255)

                                                             tgagAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCa                            <  2:2514667/90‑1 (MQ=255)

                                                             tGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCa                            >  1:185653/1‑93 (MQ=255)

                                                             tGGGAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCa                            <  2:3675790/93‑1 (MQ=255)

                                                                gAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGAt                         <  1:3208998/93‑1 (MQ=255)

                                                                gAATAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGAt                         >  2:3204543/1‑93 (MQ=255)

                                                                 aaTAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATa                        <  1:3645448/93‑1 (MQ=255)

                                                                 aaTAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATa                        >  2:554512/1‑93 (MQ=255)

                                                                 aaTAAGATAAGTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATa                        >  1:642033/1‑93 (MQ=255)

                                                                  ataagataagTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAg                       >  1:2529825/1‑93 (MQ=255)

                                                                   taagataagTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGc                      <  1:4231/93‑1 (MQ=255)

                                                                    aagataagTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGcc                     >  2:4088027/1‑93 (MQ=255)

                                                                    aagataagTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGcc                     <  2:425908/93‑1 (MQ=255)

                                                                     agataagTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCa                    <  2:495740/93‑1 (MQ=255)

                                                                      gataagTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCAc                   >  1:1773832/1‑93 (MQ=255)

                                                                      gataagTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCAc                   >  1:4383355/1‑93 (MQ=255)

                                                                       ataagTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACg                  <  2:4354903/93‑1 (MQ=255)

                                                                        taagTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGa                 >  2:2549337/1‑93 (MQ=255)

                                                                        taagTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGa                 >  2:4620577/1‑93 (MQ=255)

                                                                        taagTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGa                 >  1:4218754/1‑93 (MQ=255)

                                                                        taagTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGa                 <  1:890704/93‑1 (MQ=255)

                                                                        taagTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGa                 >  2:1859700/1‑93 (MQ=255)

                                                                          agTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATa               <  2:465467/93‑1 (MQ=255)

                                                                          agTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATa               <  2:1205541/93‑1 (MQ=255)

                                                                           gTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATag              >  2:2279250/1‑93 (MQ=255)

                                                                           gTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATag              >  2:2016916/1‑93 (MQ=255)

                                                                           gTTTTCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATag              >  1:3769066/1‑93 (MQ=255)

                                                                            ttttCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATaga             <  1:1606308/93‑1 (MQ=255)

                                                                            ttttCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCACCTGGATATCTTCCATCAGATAGCCACGATaga             <  1:1428549/93‑1 (MQ=255)

                                                                              ttCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGc           <  2:637516/93‑1 (MQ=255)

                                                                               tCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCa          >  2:2634737/1‑93 (MQ=255)

                                                                               tCTTGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCa          <  2:1662183/93‑1 (MQ=255)

                                                                                  tGACTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGaa       >  2:156077/1‑93 (MQ=255)

                                                                                     cTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAAc    >  1:1814490/1‑93 (MQ=255)

                                                                                     cTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAAc    >  1:201428/1‑93 (MQ=255)

                                                                                     cTGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCAAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAAc    >  2:3167256/1‑93 (MQ=255)

                                                                                      tGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACg   >  1:3240419/1‑93 (MQ=255)

                                                                                      tGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACg   >  1:1571918/1‑93 (MQ=255)

                                                                                      tGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACg   >  2:1783676/1‑93 (MQ=255)

                                                                                      tGGGAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACg   >  1:2602112/1‑93 (MQ=255)

                                                                                       gggAA‑GTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGc  <  1:2781022/93‑1 (MQ=255)

GCTAACGAAATATCGCCACCAGCTCCAGCGTGTCTTAACCGCCGGGCTGGTAACTGAAAAGTGGGAATAAGATAAGTTTTCTTGACTGGGAAGGTAAAATACCGTATGCGTTCAGTCGGCAAAATTTCGCCAAATCTCCTGGATATCTTCCATCAGATAGCCACGATAGAGCAGAAAACGC  >  NC_000913/2820051‑2820231

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`