BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,389,812	Δ1 bp	intergenic (‑149/+4151)	tldD ← / ← cafA	TldD/CafA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,389,811	0	C	.	100.0%	338.9 / NA	96	intergenic (‑148/+4152)	tldD/cafA	TldD/CafA
Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (48/48); total (48/48)

Only 100 of 111 total aligned reads displayed.

CGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACG  >  NC_000913/3389719‑3389891

cggcgTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGc                                                                                  <  1:3919733/93‑1 (MQ=255)

 ggcgTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGcg                                                                                 >  2:678414/1‑92 (MQ=255)

  gcgTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGcgg                                                                                >  1:4575980/1‑91 (MQ=255)

  gcgTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGcgg                                                                                <  2:3795737/93‑3 (MQ=255)

  gcgTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTCATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGcgg                                                                                >  2:3665559/1‑91 (MQ=255)

   cgTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGcggc                                                                               <  2:2682068/93‑4 (MQ=255)

    gTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGcggcg                                                                              >  1:3240734/1‑89 (MQ=255)

     tGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGt                                                                            >  1:3748675/1‑93 (MQ=255)

     tGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGt                                                                            <  1:3667134/93‑1 (MQ=255)

      gAACGCCCTAGCCAGCCTATGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTa                                                                           <  2:4119805/93‑1 (MQ=17)

        aCGCCCTATCCAGCCTACGTTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTaaa                                                                         <  1:2074356/93‑1 (MQ=255)

        aCGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTaaa                                                                         <  2:947406/93‑1 (MQ=255)

        aCGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTaaa                                                                         <  1:4100817/93‑1 (MQ=255)

        aCGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTaaa                                                                         <  1:4483461/93‑1 (MQ=255)

        aCGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTaaa                                                                         <  1:2640128/93‑1 (MQ=255)

        aCGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTaaa                                                                         <  2:4215202/93‑1 (MQ=255)

        aCGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTaaa                                                                         <  1:1573499/93‑1 (MQ=255)

           cccTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGc                                                                      <  1:3875136/93‑1 (MQ=255)

           cccTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGc                                                                      <  2:2831761/93‑1 (MQ=255)

           cccTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGc                                                                      >  2:4211708/1‑93 (MQ=255)

           cccTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGc                                                                      >  1:1762862/1‑93 (MQ=255)

            ccTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGCT‑CCGGCGTAAAAGcc                                                                     >  2:457691/1‑93 (MQ=17)

            ccTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGcc                                                                     >  1:2240402/1‑93 (MQ=255)

            ccTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGcc                                                                     >  2:878120/1‑93 (MQ=255)

            ccTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGcc                                                                     <  1:141592/93‑1 (MQ=255)

            ccTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGcc                                                                     >  1:694047/1‑93 (MQ=255)

             cTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCt                                                                    >  1:4166445/1‑93 (MQ=255)

             cTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCt                                                                    >  1:641003/1‑93 (MQ=255)

             cTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCt                                                                    >  1:3997490/1‑93 (MQ=255)

             cTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCt                                                                    >  1:3893731/1‑93 (MQ=255)

             cTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCt                                                                    <  1:2158713/93‑1 (MQ=255)

             cTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑AGGCGTAAACGCCt                                                                    >  2:1110942/1‑93 (MQ=255)

              tATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCtt                                                                   >  2:4515351/1‑93 (MQ=255)

              tATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCtt                                                                   <  1:842614/93‑1 (MQ=255)

               aTCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTa                                                                  <  1:1331676/93‑1 (MQ=255)

               aTCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTa                                                                  >  2:1720145/1‑93 (MQ=255)

                tCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTAt                                                                 <  2:3762383/93‑1 (MQ=255)

                tCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTAt                                                                 <  1:273784/93‑1 (MQ=255)

                tCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCCTAt                                                                 >  2:2901626/1‑93 (MQ=255)

                 ccAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTGGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATc                                                                <  1:3299844/93‑1 (MQ=255)

                 ccAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATc                                                                <  2:633499/93‑1 (MQ=255)

                 ccAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATc                                                                <  1:2713613/93‑1 (MQ=255)

                 ccAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATc                                                                <  1:1455698/93‑1 (MQ=255)

                  cAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATcc                                                               <  2:3543311/93‑1 (MQ=255)

                  cAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATcc                                                               <  1:4443194/93‑1 (MQ=255)

                  cAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATcc                                                               <  1:901285/93‑1 (MQ=255)

                  cAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATcc                                                               >  1:1407706/1‑93 (MQ=255)

                   aGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCg                                                              >  1:2060346/1‑93 (MQ=255)

                   aGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCg                                                              >  2:705461/1‑93 (MQ=255)

                    gCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGa                                                             >  1:1985358/1‑93 (MQ=255)

                    gCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGa                                                             <  2:670342/93‑1 (MQ=255)

                    gCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGa                                                             >  2:3557448/1‑93 (MQ=255)

                    gCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGa                                                             >  2:3505148/1‑93 (MQ=255)

                    gCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGa                                                             >  2:2906411/1‑93 (MQ=255)

                    gCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGa                                                             >  1:4263000/1‑93 (MQ=255)

                     ccTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGAc                                                            >  2:628586/1‑93 (MQ=19)

                      cTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGAcc                                                           >  1:4406801/1‑93 (MQ=19)

                       tACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCt                                                          >  1:218202/1‑93 (MQ=19)

                       tACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCt                                                          >  1:1142031/1‑93 (MQ=19)

                       tACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCt                                                          <  2:1570449/93‑1 (MQ=19)

                        agggTTATTTTCCGTTTTGTA‑GCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTAc                                                        <  2:3300486/91‑1 (MQ=11)

                        aCGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTa                                                         >  1:3043679/1‑93 (MQ=19)

                        aCGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTa                                                         <  1:2656411/93‑1 (MQ=255)

                         cGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTAc                                                        <  2:1165684/93‑1 (MQ=19)

                         cGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTAc                                                        <  2:1636749/93‑1 (MQ=19)

                          ggTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACg                                                       >  1:2300141/1‑93 (MQ=19)

                          ggTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACg                                                       <  1:3664601/93‑1 (MQ=19)

                          ggTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACg                                                       >  1:759506/1‑93 (MQ=19)

                          ggTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACg                                                       >  2:1807630/1‑93 (MQ=19)

                          ggTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACg                                                       >  2:2930776/1‑93 (MQ=19)

                          ggTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACg                                                       >  2:3867711/1‑93 (MQ=19)

                          ggTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATACGACCTACg                                                       >  2:2228904/1‑93 (MQ=255)

                          ggTTATGTGCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACg                                                       >  2:4573694/1‑93 (MQ=255)

                            ttATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGt                                                     >  1:1139291/1‑93 (MQ=19)

                            ttATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGt                                                     <  1:2131830/93‑1 (MQ=19)

                            ttATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGt                                                     >  2:1041993/1‑93 (MQ=19)

                            ttATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGt                                                     <  2:2232779/93‑1 (MQ=19)

                            ttATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGt                                                     >  1:69931/1‑93 (MQ=19)

                            ttATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGt                                                     >  2:4624052/1‑93 (MQ=19)

                             tATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGtt                                                    >  2:2006942/1‑93 (MQ=19)

                             tATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGtt                                                    <  2:3455700/93‑1 (MQ=19)

                             tATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGtt                                                    >  2:2952763/1‑93 (MQ=19)

                             tATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGtt                                                    >  2:929222/1‑93 (MQ=19)

                              aTGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGTTa                                                   >  1:4069481/1‑93 (MQ=19)

                              aTGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGTTa                                                   >  1:3500296/1‑93 (MQ=19)

                              aTGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGTTa                                                   >  2:2922210/1‑93 (MQ=19)

                              aTGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCATATCCGACCTACGGTTa                                                   >  1:2286662/1‑93 (MQ=255)

                               tGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGTTAt                                                  <  2:3596501/93‑1 (MQ=19)

                               tGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGTTAt                                                  <  2:4084257/93‑1 (MQ=19)

                               tGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGTTAt                                                  <  2:324170/93‑1 (MQ=19)

                                 ttCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGTTATGt                                                <  1:1685766/93‑1 (MQ=16)

                                 ttCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGTTATGt                                                <  2:1852375/93‑1 (MQ=16)

                                 ttCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGTTATGt                                                >  1:3266964/1‑93 (MQ=16)

                                 ttCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGTTATGt                                                >  2:3009155/1‑93 (MQ=16)

                                 ttCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGTTATGt                                                <  1:3615430/93‑1 (MQ=16)

                                   ccGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGTTATGTTc                                              <  2:2215332/93‑1 (MQ=9)

                                    cGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCATCGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGTTATGTTcc                                             >  1:2522470/1‑93 (MQ=0)

                                    cGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGTTATGTTcc                                             >  2:2724258/1‑93 (MQ=0)

                                    cGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATG‑CGGCGTAAACGCCTTATCCGACCTACGGTTATGTTcc                                             <  1:3683256/93‑1 (MQ=0)

                                                                               cGGCTGTCGGAT‑CCGGCGGAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACg  <  1:1492831/93‑1 (MQ=9)

CGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACG  >  NC_000913/3389719‑3389891

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`