Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 959,388 (T)8→7 intergenic (+70/‑75) aroA → / → ycaL 5‑enolpyruvylshikimate‑3‑phosphate synthetase/putative heat shock protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913959,3810T.100.0% 416.8 / NA 92intergenic (+63/‑82)aroA/ycaL5‑enolpyruvylshikimate‑3‑phosphate synthetase/putative heat shock protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base . (23/69);  total (23/69)

Only 100 of 101 total aligned reads displayed.

GCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGAT  >  NC_000913/959291‑959467
                                                                                          |                                                                                      
gcTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGttt                                                                                      <  1:268221/93‑1 (MQ=255)
 cTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGtttt                                                                                     <  1:1316923/93‑1 (MQ=255)
  tGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGttttt                                                                                    <  1:317223/93‑1 (MQ=255)
  tGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGttttt                                                                                    >  1:2608675/1‑93 (MQ=255)
     cgcgGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGtttttttc                                                                                 <  1:743769/93‑2 (MQ=255)
     cgcgGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGtttttttc                                                                                 <  1:3376055/93‑2 (MQ=255)
      gcgGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGtttttttcg                                                                                >  1:2498736/1‑91 (MQ=255)
         gATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGAc                                                                            >  1:3219075/1‑93 (MQ=255)
          aTTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGAcc                                                                           >  1:2564885/1‑93 (MQ=255)
          aTTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGAcc                                                                           <  1:930005/93‑1 (MQ=255)
          aTTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGAcc                                                                           <  2:1543602/93‑1 (MQ=255)
             aGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTtg                                                                        <  1:2265269/93‑1 (MQ=255)
              gCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTtgt                                                                       <  2:1930076/93‑1 (MQ=255)
                cAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGa                                                                     <  1:3423188/93‑1 (MQ=255)
                 aGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAg                                                                    <  1:1867021/93‑1 (MQ=255)
                 aGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAg                                                                    <  1:2797224/93‑1 (MQ=255)
                 aGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAg                                                                    <  2:1405227/93‑1 (MQ=255)
                  ggCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGt                                                                   >  1:2352915/1‑93 (MQ=255)
                  ggCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGt                                                                   >  1:657893/1‑93 (MQ=255)
                   gCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTc                                                                  <  2:101797/93‑1 (MQ=255)
                    cAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCa                                                                 <  2:1753775/93‑1 (MQ=255)
                          gaatgaaCAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGa                                                           <  2:4074913/93‑1 (MQ=255)
                          gaatgaaCAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGa                                                           <  1:595272/93‑1 (MQ=255)
                            atgaaCAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGAtt                                                         <  2:424733/93‑1 (MQ=255)
                            atgaaCAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGAtt                                                         >  2:145256/1‑93 (MQ=255)
                              gaaCAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTaa                                                       <  1:1976367/93‑1 (MQ=255)
                               aacaacGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAAt                                                      <  1:1242656/93‑1 (MQ=255)
                               aacaacGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAAt                                                      <  1:1168854/93‑1 (MQ=255)
                                acaacGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATg                                                     <  2:2893788/93‑1 (MQ=255)
                                  aacGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGt                                                   <  2:1907668/93‑1 (MQ=255)
                                  aacGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGt                                                   <  1:134148/93‑1 (MQ=255)
                                   acGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTa                                                  <  1:2985405/93‑1 (MQ=255)
                                    cGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAg                                                 <  1:4457710/93‑1 (MQ=255)
                                     gggCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGc                                                <  1:2462693/93‑1 (MQ=255)
                                      ggCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCg                                               <  1:2860900/93‑1 (MQ=255)
                                      ggCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCg                                               <  2:1719754/93‑1 (MQ=255)
                                       gCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGt                                              <  2:4433430/93‑1 (MQ=255)
                                          ataaataGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGc                                           <  2:4181122/93‑1 (MQ=255)
                                          ataaataGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGc                                           <  1:2618577/93‑1 (MQ=255)
                                          ataaataGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGc                                           >  2:1576806/1‑93 (MQ=255)
                                            aaataGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCtt                                         >  1:1721849/1‑93 (MQ=255)
                                                 gCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCaa                                    <  1:511968/93‑1 (MQ=255)
                                                  ccAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAAt                                   <  1:3702743/93‑1 (MQ=255)
                                                   cAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATg                                  <  1:1621706/93‑1 (MQ=255)
                                                   cAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATg                                  <  2:298676/93‑1 (MQ=255)
                                                    aaaTCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGt                                 <  2:4494747/93‑1 (MQ=255)
                                                    aaaTCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGt                                 >  2:3930354/1‑93 (MQ=255)
                                                    aaaTCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGt                                 <  2:898432/93‑1 (MQ=255)
                                                    aaaTCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGt                                 >  1:3273514/1‑93 (MQ=255)
                                                     aaTCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTACTGGTAGCGTCGCTTGTCAATGTa                                >  2:3510009/1‑93 (MQ=255)
                                                     aaTCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTa                                >  2:1276761/1‑93 (MQ=255)
                                                      aTCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTaa                               <  2:4267406/93‑1 (MQ=255)
                                                      aTCTTTCTTTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTaa                               <  2:1498746/93‑1 (MQ=255)
                                                       tctttcttTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAg                              >  2:3587635/1‑93 (MQ=255)
                                                       tctttcttTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAg                              >  1:3131801/1‑93 (MQ=255)
                                                       tctttcttTATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAg                              <  1:3287054/93‑1 (MQ=255)
                                                        ctttctttATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgt                             <  2:4269534/93‑1 (MQ=255)
                                                        ctttctttATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgt                             <  1:2934297/93‑1 (MQ=255)
                                                         tttctttATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgtt                            <  1:840368/93‑1 (MQ=255)
                                                         tttctttATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgtt                            <  1:298426/93‑1 (MQ=255)
                                                         tttctttATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgtt                            >  2:1800284/1‑93 (MQ=255)
                                                           tctttATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgttgt                          <  1:4485234/93‑1 (MQ=255)
                                                           tctttATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgttgt                          <  1:199850/93‑1 (MQ=255)
                                                           tctttATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgttgt                          >  1:3334244/1‑93 (MQ=255)
                                                           tctttATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgttgt                          <  2:1467022/93‑1 (MQ=255)
                                                            ctttATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAgttgtt                         <  2:270737/93‑1 (MQ=255)
                                                              ttATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGa                       <  2:3601450/93‑1 (MQ=255)
                                                               tATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGAt                      >  1:3818380/1‑93 (MQ=255)
                                                               tATCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGAt                      <  2:535536/93‑1 (MQ=255)
                                                                aTCAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATa                     <  1:930047/93‑1 (MQ=255)
                                                                  cAAAACGTCGGCACATTGTCGGCG‑TTTTTTTCGGCCCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACa                   <  1:650267/93‑1 (MQ=255)
                                                                   aaaaCGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACat                  >  1:3639675/1‑93 (MQ=255)
                                                                   aaaaCGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACat                  <  2:3560165/93‑1 (MQ=255)
                                                                   aaaaCGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACat                  <  2:1292411/93‑1 (MQ=255)
                                                                    aaaCGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACata                 <  2:1753543/93‑1 (MQ=255)
                                                                    aaaCGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACata                 <  1:3061453/93‑1 (MQ=255)
                                                                       cGTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACataata              <  1:2363951/93‑1 (MQ=255)
                                                                        gTCGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAatat             >  2:1855884/1‑93 (MQ=255)
                                                                          cGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATAttt           <  2:1208834/93‑1 (MQ=255)
                                                                          cGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATAttt           <  1:956955/93‑1 (MQ=255)
                                                                          cGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATAttt           >  1:1851889/1‑93 (MQ=255)
                                                                          cGGCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATAttt           <  1:3241614/93‑1 (MQ=255)
                                                                           ggCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTta          <  2:3267101/93‑1 (MQ=255)
                                                                           ggCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTta          <  1:818868/93‑1 (MQ=255)
                                                                            gCACATTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTtat         >  2:2362694/1‑93 (MQ=255)
                                                                            gCACATTGTCGGCG‑TTTTGTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTtat         <  2:3927608/93‑1 (MQ=255)
                                                                             cacaTTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTtata        <  1:2891761/93‑1 (MQ=255)
                                                                             cacaTTGTCGGCG‑ATTTTTTCGGTCCTTGTGAGTGCTTTTGATTAATGGTAGCGTCGCTTGTTAATGTAAGTTGTTGATAACTAATATTtata        >  1:2537255/1‑93 (MQ=255)
                                                                              acaTTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTtatat       >  2:2387084/1‑93 (MQ=255)
                                                                              acaTTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTtatat       <  1:3869965/93‑1 (MQ=255)
                                                                               caTTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTtatata      <  1:1608463/93‑1 (MQ=255)
                                                                                aTTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTatatat     >  1:1335374/1‑93 (MQ=255)
                                                                                aTTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTatatat     <  2:1371165/93‑1 (MQ=255)
                                                                                aTTGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTatatat     <  1:421907/93‑1 (MQ=255)
                                                                                 ttGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATg    <  2:3257958/93‑1 (MQ=255)
                                                                                 ttGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATg    >  2:2071316/1‑93 (MQ=255)
                                                                                  tGTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGa   <  2:4528757/93‑1 (MQ=255)
                                                                                   gTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGAt  <  2:3641877/93‑1 (MQ=255)
                                                                                   gTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGAt  <  2:3551637/93‑1 (MQ=255)
                                                                                   gTCGGCG‑TTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGAt  <  2:1772713/93‑1 (MQ=255)
                                                                                          |                                                                                      
GCTGGCGCGGATTAGCCAGGCAGCCTGAATGAACAACGGGCAATAAATAGCCAAATCTTTCTTTATCAAAACGTCGGCACATTGTCGGCGTTTTTTTTCGGACCTTGTGAGTCATTTTGATTAATGGTAGCGTCGCTTGTCAATGTAAGTTGTTGATACATAATATTTATATATGAT  >  NC_000913/959291‑959467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑