BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,212,032	Δ1 bp	coding (299/405 nt)	ycgX ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,212,029	0	A	.	98.9%	413.8 / ‑2.5	93	coding (302/405 nt)	ycgX	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/1); new base . (45/47); total (45/48)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.33e-01

Only 100 of 102 total aligned reads displayed.

GTTTATTATTTTCTACATCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGAAAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCTTTTATTTTAGCA  >  NC_000913/1211937‑1212118

gTTTATTATTTTCTACATCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGa                                                                                           >  2:4641991/1‑93 (MQ=255)

 tttATTATTTTCTACATCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGaa                                                                                          >  2:2184686/1‑93 (MQ=255)

  ttattaTTTTCTACATCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGaaa                                                                                         <  2:2704190/93‑1 (MQ=255)

   tattatTTTCTACATCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGaaac                                                                                        >  2:4266248/1‑92 (MQ=255)

     ttattTTCTACATCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGaaacgc                                                                                      <  2:1424650/93‑4 (MQ=255)

      tattTTCTACATCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGaaacgcc                                                                                     <  2:2227843/93‑5 (MQ=255)

      tattTTCTACATCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGaaacgcc                                                                                     <  1:4326325/93‑5 (MQ=255)

      tattTTCTACATCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGaaacgcc                                                                                     >  2:4345789/1‑89 (MQ=255)

       attTTCTACATCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGccc                                                                                   <  2:3346900/93‑1 (MQ=255)

        ttttCTACATCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCcg                                                                                  >  1:4245913/1‑93 (MQ=255)

            cTACATCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTCACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGcc                                                                              <  1:2038684/93‑1 (MQ=255)

             tACATCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCt                                                                             >  2:1083451/1‑93 (MQ=255)

             tACATCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCt                                                                             >  1:1768322/1‑93 (MQ=255)

             tACATCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCt                                                                             >  1:1571171/1‑93 (MQ=255)

              aCATCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTg                                                                            >  1:2601446/1‑93 (MQ=255)

               cATCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGc                                                                           >  1:2829100/1‑93 (MQ=255)

                aTCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGcc                                                                          <  2:3687943/93‑1 (MQ=255)

                aTCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGcc                                                                          <  1:2752576/93‑1 (MQ=255)

                 tCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGGCa                                                                         >  2:1774960/1‑93 (MQ=255)

                 tCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCa                                                                         >  2:1493594/1‑93 (MQ=255)

                 tCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCa                                                                         >  1:3335220/1‑93 (MQ=255)

                 tCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCa                                                                         >  2:1491471/1‑93 (MQ=255)

                 tCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCa                                                                         >  2:2702777/1‑93 (MQ=255)

                  cTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAg                                                                        <  1:2807057/93‑1 (MQ=255)

                   ttCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAgt                                                                       <  1:2791077/93‑1 (MQ=255)

                     cAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAgtgt                                                                     <  1:3426141/93‑1 (MQ=255)

                     cAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAgtgt                                                                     <  2:581482/93‑1 (MQ=255)

                      aaTATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGtt                                                                    <  1:3327764/93‑1 (MQ=255)

                      aaTATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGtt                                                                    <  1:3683451/93‑1 (MQ=255)

                      aaTATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGtt                                                                    >  1:2624655/1‑93 (MQ=255)

                        tatataAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGa                                                                  >  1:3280575/1‑93 (MQ=255)

                        tatataAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGa                                                                  >  1:3082420/1‑93 (MQ=255)

                        tatataAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGa                                                                  >  2:4632210/1‑93 (MQ=255)

                         atataAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGaa                                                                 >  1:865049/1‑93 (MQ=255)

                          tataAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAAc                                                                >  1:3591670/1‑93 (MQ=255)

                          tataAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAAc                                                                >  2:3262742/1‑93 (MQ=255)

                          tataAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAAc                                                                >  1:1949410/1‑93 (MQ=255)

                            taAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAg                                                              <  1:4240676/93‑1 (MQ=255)

                            taAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAg                                                              <  2:2654712/93‑1 (MQ=255)

                            taAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAg                                                              >  1:3695535/1‑93 (MQ=255)

                             aaaaGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGt                                                             >  2:3993339/1‑93 (MQ=255)

                                aGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTAtt                                                          >  2:110325/1‑93 (MQ=255)

                                 gCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTc                                                         >  2:3970925/1‑93 (MQ=255)

                                 gCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTc                                                         <  2:781722/93‑1 (MQ=255)

                                 gCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTc                                                         >  2:4423186/1‑93 (MQ=255)

                                  cGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTACCCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTcc                                                        <  1:3180344/93‑1 (MQ=255)

                                    tattatCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCg                                                      >  1:3401199/1‑93 (MQ=255)

                                    tattatCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCg                                                      >  2:2093893/1‑93 (MQ=255)

                                     attatCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGa                                                     >  2:1287816/1‑93 (MQ=255)

                                       tatCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGaaa                                                   <  2:3134853/93‑1 (MQ=255)

                                       tatCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGaaa                                                   <  2:1955382/93‑1 (MQ=255)

                                         tCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATg                                                 <  2:3396707/93‑1 (MQ=255)

                                         tCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATg                                                 >  2:3781983/1‑93 (MQ=255)

                                            aTGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAg                                              >  1:3334318/1‑93 (MQ=255)

                                            aTGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAg                                              >  2:3864042/1‑93 (MQ=255)

                                              ggCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGAt                                            <  2:14924/93‑1 (MQ=255)

                                              ggCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGAt                                            <  2:3607058/93‑1 (MQ=255)

                                              ggCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGAt                                            <  1:4180639/93‑1 (MQ=255)

                                               gCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGAtt                                           <  2:833049/93‑1 (MQ=255)

                                                  tagtaACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTc                                        <  2:4369986/93‑1 (MQ=255)

                                                    gtaACTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCg                                      <  2:4650799/93‑1 (MQ=255)

                                                       aCTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCaa                                   >  2:4210312/1‑93 (MQ=255)

                                                       aCTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCaa                                   >  2:460120/1‑93 (MQ=255)

                                                        cTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCaaa                                  <  2:3849830/93‑1 (MQ=255)

                                                        cTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCaaa                                  >  1:386087/1‑93 (MQ=255)

                                                        cTGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCaaa                                  >  1:8691/1‑93 (MQ=255)

                                                         tGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAat                                 <  1:4125175/93‑1 (MQ=255)

                                                         tGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAat                                 >  2:4033850/1‑93 (MQ=255)

                                                         tGCGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAat                                 >  2:4149775/1‑93 (MQ=255)

                                                           cGTTTGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAatat                               <  2:4386828/93‑1 (MQ=255)

                                                           cGTTTCTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAatat                               <  1:1274298/93‑1 (MQ=255)

                                                             tttGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGa                             <  2:4657705/93‑1 (MQ=255)

                                                             tttGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGa                             >  1:3929249/1‑93 (MQ=255)

                                                             tttGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGa                             >  1:1060090/1‑93 (MQ=255)

                                                              ttGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGaa                            <  2:2893410/93‑1 (MQ=255)

                                                              ttGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGaa                            >  2:4531801/1‑93 (MQ=255)

                                                              ttGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGaa                            <  1:878441/93‑1 (MQ=255)

                                                              ttGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGaa                            <  1:946100/93‑1 (MQ=255)

                                                               tGTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAg                           <  1:1468895/93‑1 (MQ=255)

                                                                gTTATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGc                          >  2:854893/1‑93 (MQ=255)

                                                                  tATGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCaa                        >  2:2249369/1‑93 (MQ=255)

                                                                   aTGATTAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAAt                       <  2:2823126/93‑1 (MQ=255)

                                                                       ttAACATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCgg                   >  2:1356840/1‑93 (MQ=255)

                                                                         aaCATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGcc                 <  2:3058050/93‑1 (MQ=255)

                                                                         aaCATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGcc                 <  2:4156142/93‑1 (MQ=255)

                                                                          aCATCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCct                >  1:3855616/1‑93 (MQ=255)

                                                                             tCAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCtt             <  2:2772665/93‑1 (MQ=255)

                                                                             acAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCtt             <  1:3075985/92‑1 (MQ=255)

                                                                              cAGTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCttt            <  1:537800/93‑1 (MQ=255)

                                                                                gTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCtttta          >  2:4283403/1‑93 (MQ=255)

                                                                                gTAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCtttta          <  2:920734/93‑1 (MQ=255)

                                                                                 tAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCttttat         <  1:3947075/93‑1 (MQ=255)

                                                                                 tAACCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCttttat         <  1:2237983/93‑1 (MQ=255)

                                                                                 tAACCCACCGG‑AAACGCCCGCGCCTGCCAGCGTTGAACAGTATTGCCGAAATGCAGATTTTCCGCTAATATGAAGCAATGCGGCCTCctttat         >  2:2958963/1‑93 (MQ=255)

                                                                                  aaCCCACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCttttatt        <  2:572510/93‑1 (MQ=255)

                                                                                    cccACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCttttatttt      <  2:4651868/93‑1 (MQ=255)

                                                                                    cccACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCgtttatttt      <  2:4543200/93‑1 (MQ=255)

                                                                                     ccACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCttttatttta     <  2:277101/93‑1 (MQ=255)

                                                                                     ccACCGG‑AAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCttttatttta     <  2:4100323/93‑1 (MQ=255)

                                                                                         cGGAAAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCTTTTATTTTAGCa  <  1:1809374/93‑1 (MQ=255)

GTTTATTATTTTCTACATCTTCAATATATAAAAGCGTATTATCAATGGCGTAGTAACTGCGTTTGTTATGATTAACATCAGTAACCCACCGGAAAACGCCCGCGCCTGCCAGTGTTGAACAGTATTCCCGAAATGTAGATTTTCCGCAAATATGAAGCAATGCGGCCTCTTTTATTTTAGCA  >  NC_000913/1211937‑1212118

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`